Wall clock time and date at job start Sun Mar 29 2020 22:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39869 * 125.89994 * 2 1 4 4 C 1.35319 * 107.92199 * 179.86733 * 3 2 1 5 5 C 1.50698 * 126.12548 * 180.14715 * 4 3 2 6 6 N 1.46506 * 109.46992 * 95.29120 * 5 4 3 7 7 C 1.34773 * 119.99784 * 179.97438 * 6 5 4 8 8 O 1.21284 * 120.00298 * 0.02562 * 7 6 5 9 9 C 1.50695 * 119.99773 * 179.97438 * 7 6 5 10 10 C 1.53006 * 109.47096 * 180.02562 * 9 7 6 11 11 C 1.50708 * 109.46977 * 180.02562 * 10 9 7 12 12 H 1.07996 * 119.99726 * 359.97438 * 11 10 9 13 13 C 1.37874 * 119.99401 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00414 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99576 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47495 * 89.99609 * 15 13 11 17 17 H 1.48500 * 109.46845 * 209.99772 * 15 13 11 18 18 H 1.48498 * 109.47052 * 329.99622 * 15 13 11 19 19 N 1.34949 * 107.74072 * 0.38975 * 4 3 2 20 20 C 1.46499 * 126.03244 * 179.74834 * 19 4 3 21 21 N 1.30834 * 125.89652 * 180.31122 * 2 1 3 22 22 H 1.09002 * 109.47152 * 269.71476 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.71576 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.71557 * 1 2 3 25 25 H 1.08001 * 126.03471 * 359.97438 * 3 2 1 26 26 H 1.09003 * 109.46903 * 215.28425 * 5 4 3 27 27 H 1.08994 * 109.47583 * 335.28793 * 5 4 3 28 28 H 0.96999 * 119.99475 * 359.97438 * 6 5 4 29 29 H 1.09004 * 109.47570 * 300.00289 * 9 7 6 30 30 H 1.09001 * 109.47197 * 60.00377 * 9 7 6 31 31 H 1.08996 * 109.46999 * 300.00090 * 10 9 7 32 32 H 1.09001 * 109.46935 * 60.00039 * 10 9 7 33 33 H 0.97005 * 120.00219 * 179.97438 * 14 13 11 34 34 H 1.08992 * 109.47808 * 269.98164 * 20 19 4 35 35 H 1.09003 * 109.47286 * 29.98436 * 20 19 4 36 36 H 1.09002 * 109.46991 * 149.97561 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6143 0.7153 0.0030 5 6 4.8351 1.5989 0.0072 6 7 5.3017 1.7805 1.3840 7 6 6.3880 2.5384 1.6329 8 8 6.9791 3.0704 0.7172 9 6 6.8676 2.7257 3.0492 10 6 8.1071 3.6227 3.0535 11 6 8.5871 3.8095 4.4698 12 1 8.0605 3.3361 5.2852 13 6 9.6979 4.5855 4.7245 14 7 10.3388 5.1623 3.7315 15 14 10.2933 4.8165 6.4799 16 1 11.2691 3.7489 6.8162 17 1 10.9468 6.1435 6.6103 18 1 9.1371 4.7407 7.4088 19 7 3.6087 -0.6341 -0.0039 20 6 4.7899 -1.5008 -0.0089 21 7 2.2741 -1.0598 -0.0058 22 1 -0.3633 -0.0051 1.0277 23 1 -0.3633 -0.8874 -0.5182 24 1 -0.3633 0.8926 -0.5094 25 1 1.9923 2.1598 -0.0004 26 1 5.6228 1.1330 -0.5848 27 1 4.5833 2.5686 -0.4220 28 1 4.8287 1.3554 2.1164 29 1 6.0799 3.1921 3.6409 30 1 7.1189 1.7560 3.4789 31 1 8.8949 3.1566 2.4617 32 1 7.8554 4.5923 2.6239 33 1 11.1201 5.7086 3.9107 34 1 5.0823 -1.7108 -1.0376 35 1 5.6097 -1.0007 0.5069 36 1 4.5567 -2.4357 0.5007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291055726.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:47 Heat of formation + Delta-G solvation = -1.941577 kcal Electronic energy + Delta-G solvation = -17554.098922 eV Core-core repulsion = 14652.452898 eV Total energy + Delta-G solvation = -2901.646024 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.38657 -40.61388 -36.27354 -35.53031 -34.73032 -33.10873 -31.80942 -30.33963 -28.34982 -26.73952 -26.21573 -23.52217 -21.58896 -21.24108 -20.42483 -18.83469 -17.88968 -17.41326 -16.91272 -16.62363 -16.49281 -16.16051 -15.28415 -14.94444 -14.53571 -14.39996 -14.35870 -14.17581 -13.84097 -13.58457 -13.23151 -13.21388 -13.00728 -12.82579 -12.78391 -12.46891 -11.90851 -11.63550 -11.60305 -11.29960 -10.91246 -10.56086 -10.20220 -10.16150 -9.55157 -8.17217 -6.30897 0.62949 1.43140 1.45384 1.49805 1.56362 1.66649 1.67981 2.34808 2.47790 3.16015 3.33670 3.55433 3.94264 4.05320 4.24884 4.32586 4.42272 4.47696 4.56349 4.56620 4.63616 4.67768 4.84744 4.90260 5.07513 5.08281 5.22287 5.30299 5.51741 5.65244 5.71617 5.86892 5.94897 6.18849 6.49875 6.68132 6.87655 7.26872 7.39375 8.95282 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.041801 B = 0.003468 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.674120 B = 8072.523507 C = 8164.875279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.061 3.939 3 C -0.257 4.257 4 C 0.065 3.935 5 C 0.189 3.811 6 N -0.716 5.716 7 C 0.518 3.482 8 O -0.582 6.582 9 C -0.119 4.119 10 C 0.042 3.958 11 C -0.543 4.543 12 H 0.075 0.925 13 C -0.006 4.006 14 N -0.937 5.937 15 Si 0.972 3.028 16 H -0.272 1.272 17 H -0.287 1.287 18 H -0.256 1.256 19 N -0.371 5.371 20 C 0.090 3.910 21 N -0.320 5.320 22 H 0.087 0.913 23 H 0.074 0.926 24 H 0.095 0.905 25 H 0.164 0.836 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.414 0.586 29 H 0.104 0.896 30 H 0.105 0.895 31 H -0.015 1.015 32 H -0.016 1.016 33 H 0.263 0.737 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.568 -12.769 -5.628 23.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.104 4.104 3 C -0.287 4.287 4 C -0.063 4.063 5 C 0.064 3.936 6 N -0.371 5.371 7 C 0.307 3.693 8 O -0.461 6.461 9 C -0.159 4.159 10 C 0.004 3.996 11 C -0.581 4.581 12 H 0.093 0.907 13 C -0.204 4.204 14 N -0.577 5.577 15 Si 0.796 3.204 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.180 1.180 19 N -0.153 5.153 20 C -0.050 4.050 21 N -0.144 5.144 22 H 0.106 0.894 23 H 0.093 0.907 24 H 0.114 0.886 25 H 0.182 0.818 26 H 0.095 0.905 27 H 0.110 0.890 28 H 0.250 0.750 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.003 0.997 32 H 0.003 0.997 33 H 0.071 0.929 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -17.834 -13.671 -6.346 23.350 hybrid contribution 0.647 1.017 0.710 1.399 sum -17.188 -12.654 -5.636 22.075 Atomic orbital electron populations 1.20305 0.84286 1.04289 1.03992 1.22911 0.98561 0.90217 0.98720 1.21514 0.90644 1.00918 1.15595 1.20976 0.96700 0.84732 1.03851 1.19662 0.91173 0.98192 0.84573 1.45927 1.29895 1.52256 1.08978 1.21276 0.79135 0.76732 0.92165 1.90678 1.57709 1.49536 1.48153 1.21642 0.99814 1.02878 0.91551 1.18698 0.91959 0.93421 0.95527 1.21721 1.12223 1.30456 0.93705 0.90698 1.26109 0.96943 0.95291 1.02036 1.70168 1.20304 1.33444 1.33777 0.85346 0.78789 0.77334 0.78929 1.19759 1.21234 1.17981 1.48697 1.05900 1.04365 1.56386 1.22129 0.83120 0.95146 1.04601 1.77286 0.86908 1.23789 1.26439 0.89415 0.90725 0.88614 0.81842 0.90464 0.89022 0.75001 0.87798 0.87719 0.99705 0.99739 0.92863 0.89467 0.88744 0.88126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 10.45 71.24 0.74 -0.15 16 2 C 0.06 1.25 7.22 43.10 0.31 1.56 16 3 C -0.26 -5.22 10.65 21.99 0.23 -4.98 16 4 C 0.07 1.40 6.30 41.41 0.26 1.66 16 5 C 0.19 4.37 5.61 85.63 0.48 4.85 16 6 N -0.72 -18.17 5.55 -466.79 -2.59 -20.76 16 7 C 0.52 18.84 7.83 87.66 0.69 19.53 16 8 O -0.58 -27.02 15.98 -3.04 -0.05 -27.07 16 9 C -0.12 -4.59 5.64 29.85 0.17 -4.42 16 10 C 0.04 2.27 4.26 29.85 0.13 2.39 16 11 C -0.54 -30.50 9.11 25.60 0.23 -30.27 16 12 H 0.07 3.83 7.74 -2.91 -0.02 3.81 16 13 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 14 N -0.94 -58.91 13.29 21.45 0.28 -58.63 16 15 Si 0.97 43.90 29.54 68.60 2.03 45.93 16 16 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 17 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 18 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 19 N -0.37 -7.99 4.01 -356.03 -1.43 -9.42 16 20 C 0.09 1.39 11.16 127.77 1.43 2.82 16 21 N -0.32 -7.68 12.58 -47.38 -0.60 -8.27 16 22 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 25 H 0.16 2.73 8.06 -2.91 -0.02 2.70 16 26 H 0.08 1.82 7.98 -2.39 -0.02 1.80 16 27 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.41 8.44 8.46 -92.71 -0.78 7.66 16 29 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 30 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 31 H -0.02 -0.95 8.10 -2.39 -0.02 -0.97 16 32 H -0.02 -0.98 8.10 -2.39 -0.02 -1.00 16 33 H 0.26 15.47 8.31 -92.70 -0.77 14.70 16 34 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.09 1.37 7.78 -2.39 -0.02 1.35 16 36 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -77.23 315.60 3.07 -74.16 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 0.29 Total: 10.98 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 5.13 Total: -6.91 kcal Atomic # 7 Polarization: -92.76 SS G_CDS: -4.33 Total: -97.09 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.05 Total: -27.07 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -77.23 3.07 -74.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291055726.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.216 kcal (2) G-P(sol) polarization free energy of solvation -77.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds