Wall clock time and date at job start Sun Mar 29 2020 22:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30821 * 125.83685 * 2 1 4 4 N 1.40067 * 108.37450 * 180.02562 * 3 2 1 5 5 C 1.46495 * 126.05753 * 180.02562 * 4 3 2 6 6 C 1.35817 * 107.88916 * 359.77503 * 4 3 2 7 7 C 1.50696 * 126.21942 * 180.22603 * 6 4 3 8 8 C 1.35754 * 107.56582 * 0.36444 * 6 4 3 9 9 N 1.40761 * 126.08312 * 179.89857 * 8 6 4 10 10 C 1.34776 * 119.99963 * 120.29879 * 9 8 6 11 11 O 1.21304 * 120.00156 * 355.08425 * 10 9 8 12 12 C 1.50700 * 119.99891 * 174.82113 * 10 9 8 13 13 C 1.52999 * 109.47027 * 180.27303 * 12 10 9 14 14 C 1.50697 * 109.46903 * 179.97438 * 13 12 10 15 15 H 1.07999 * 120.00321 * 359.97438 * 14 13 12 16 16 C 1.37883 * 119.99929 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00013 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00223 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46963 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47217 * 119.99990 * 18 16 14 21 21 H 1.48500 * 109.47331 * 240.00338 * 18 16 14 22 22 H 1.09001 * 109.47125 * 286.84385 * 1 2 3 23 23 H 1.09000 * 109.47159 * 46.84076 * 1 2 3 24 24 H 1.09004 * 109.47263 * 166.83902 * 1 2 3 25 25 H 1.09001 * 109.47602 * 89.97303 * 5 4 3 26 26 H 1.09001 * 109.47001 * 209.97613 * 5 4 3 27 27 H 1.09006 * 109.46994 * 329.96999 * 5 4 3 28 28 H 1.09000 * 109.47606 * 270.16888 * 7 6 4 29 29 H 1.09003 * 109.47161 * 30.16170 * 7 6 4 30 30 H 1.09002 * 109.47511 * 150.16484 * 7 6 4 31 31 H 0.96998 * 119.99967 * 300.29595 * 9 8 6 32 32 H 1.09003 * 109.46952 * 300.26647 * 12 10 9 33 33 H 1.08997 * 109.47567 * 60.26630 * 12 10 9 34 34 H 1.08999 * 109.47158 * 299.99245 * 13 12 10 35 35 H 1.08998 * 109.47102 * 59.99652 * 13 12 10 36 36 H 0.96996 * 120.00161 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2729 1.0606 0.0000 4 7 3.6091 0.6402 -0.0006 5 6 4.7870 1.5112 -0.0003 6 6 3.6192 -0.7179 0.0041 7 6 4.8415 -1.5992 0.0101 8 6 2.3280 -1.1372 -0.0007 9 7 1.8910 -2.4753 -0.0002 10 6 1.1177 -2.9312 1.0051 11 8 0.8719 -2.2161 1.9536 12 6 0.5535 -4.3275 0.9480 13 6 -0.2869 -4.5895 2.1993 14 6 -0.8516 -5.9855 2.1419 15 1 -0.6334 -6.6220 1.2972 16 6 -1.6470 -6.4501 3.1679 17 7 -1.9133 -5.6749 4.1963 18 14 -2.3465 -8.1808 3.0971 19 1 -1.9013 -8.8438 1.8450 20 1 -1.8637 -8.9580 4.2667 21 1 -3.8299 -8.1167 3.1234 22 1 -0.3633 0.2978 0.9836 23 1 -0.3633 0.7029 -0.7496 24 1 -0.3634 -1.0007 -0.2340 25 1 5.0791 1.7270 1.0275 26 1 5.6083 1.0118 -0.5143 27 1 4.5500 2.4430 -0.5139 28 1 5.1406 -1.8128 -1.0161 29 1 5.6547 -1.0892 0.5267 30 1 4.6137 -2.5331 0.5241 31 1 2.1463 -3.0691 -0.7234 32 1 -0.0728 -4.4303 0.0617 33 1 1.3701 -5.0478 0.9013 34 1 0.3392 -4.4867 3.0856 35 1 -1.1036 -3.8691 2.2459 36 1 -2.4725 -6.0019 4.9182 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291192483.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:51 Heat of formation + Delta-G solvation = 24.030312 kcal Electronic energy + Delta-G solvation = -18133.845059 eV Core-core repulsion = 15233.325260 eV Total energy + Delta-G solvation = -2900.519799 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.34139 -38.82270 -34.61461 -33.78716 -33.41069 -31.40393 -30.65749 -29.41079 -26.94093 -25.78219 -24.87481 -22.02118 -20.13619 -19.88740 -19.16056 -16.99712 -16.84710 -15.82980 -15.59890 -15.26811 -14.74130 -14.39829 -13.82860 -13.46697 -13.42484 -13.27738 -13.02250 -12.72882 -12.49726 -12.19464 -12.06011 -11.90497 -11.86303 -11.13346 -10.93749 -10.74353 -10.56398 -9.93522 -9.63500 -9.43904 -9.14528 -8.99522 -8.97022 -8.30745 -7.89785 -5.94204 -3.98483 1.77788 2.39199 2.71635 3.33904 3.35504 3.41097 3.44215 3.71408 4.46633 4.50405 4.55642 4.91082 4.95683 5.09309 5.19874 5.29097 5.40145 5.40897 5.62169 5.66303 5.85876 5.92745 6.08162 6.13735 6.25268 6.26306 6.50660 6.90497 6.93052 7.18761 7.73797 7.77134 7.88797 7.94481 8.09543 8.40989 8.86519 9.10744 9.65067 11.16740 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.043769 B = 0.004224 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.574250 B = 6627.972880 C = 6918.572081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.094 3.906 3 N -0.295 5.295 4 N -0.379 5.379 5 C 0.109 3.891 6 C 0.067 3.933 7 C -0.087 4.087 8 C 0.005 3.995 9 N -0.666 5.666 10 C 0.509 3.491 11 O -0.518 6.518 12 C -0.127 4.127 13 C 0.037 3.963 14 C -0.526 4.526 15 H 0.056 0.944 16 C 0.058 3.942 17 N -0.889 5.889 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 H 0.080 0.920 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.401 0.599 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.023 0.977 35 H 0.024 0.976 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.002 10.236 -12.276 21.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.074 4.074 3 N -0.118 5.118 4 N -0.163 5.163 5 C -0.033 4.033 6 C -0.061 4.061 7 C -0.145 4.145 8 C -0.099 4.099 9 N -0.316 5.316 10 C 0.298 3.702 11 O -0.391 6.391 12 C -0.167 4.167 13 C -0.001 4.001 14 C -0.564 4.564 15 H 0.075 0.925 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.210 1.210 22 H 0.099 0.901 23 H 0.088 0.912 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.103 0.897 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.237 0.763 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.042 0.958 35 H 0.043 0.957 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.853 12.101 -11.390 21.635 hybrid contribution -0.158 -1.999 -0.260 2.022 sum 13.695 10.103 -11.650 20.623 Atomic orbital electron populations 1.20139 0.86365 1.03073 1.03070 1.22422 0.97183 0.89753 0.98048 1.77265 0.86032 1.22119 1.26346 1.48121 1.05496 1.03640 1.59040 1.21754 0.83809 0.94546 1.03191 1.20984 0.96612 0.84854 1.03628 1.20385 0.92672 0.98525 1.02960 1.17071 0.90010 0.86032 1.16792 1.43162 1.53894 1.08167 1.26422 1.21736 0.77080 0.90527 0.80867 1.90690 1.57353 1.58803 1.32267 1.21861 1.00755 0.89891 1.04237 1.18906 0.94449 0.96368 0.90363 1.21259 1.30637 0.99038 1.05507 0.92537 1.25025 0.96422 0.97453 0.95484 1.70007 1.37733 1.36019 1.09040 0.86548 0.78829 0.84733 0.77920 1.19744 1.21065 1.21030 0.90104 0.91201 0.90672 0.90972 0.89732 0.89377 0.90367 0.91106 0.89517 0.76315 0.90052 0.90226 0.95835 0.95736 0.93026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 9.65 36.01 0.35 -0.70 16 2 C 0.09 1.57 6.90 -82.26 -0.57 1.00 16 3 N -0.30 -4.79 12.56 33.75 0.42 -4.36 16 4 N -0.38 -5.01 4.04 -63.57 -0.26 -5.26 16 5 C 0.11 0.85 11.12 59.84 0.67 1.52 16 6 C 0.07 0.89 6.98 -81.72 -0.57 0.32 16 7 C -0.09 -0.78 9.87 36.00 0.36 -0.42 16 8 C 0.00 0.07 5.92 -83.88 -0.50 -0.42 16 9 N -0.67 -10.02 5.26 -10.03 -0.05 -10.07 16 10 C 0.51 9.88 6.90 -10.99 -0.08 9.80 16 11 O -0.52 -12.42 15.16 5.54 0.08 -12.33 16 12 C -0.13 -2.54 5.64 -27.88 -0.16 -2.70 16 13 C 0.04 0.98 4.26 -27.89 -0.12 0.86 16 14 C -0.53 -14.83 9.11 -34.44 -0.31 -15.15 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -27.43 13.29 55.43 0.74 -26.69 16 18 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 23 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 24 H 0.07 1.18 7.35 -51.93 -0.38 0.80 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.42 7.71 -51.93 -0.40 0.02 16 27 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.51 7.77 -51.93 -0.40 0.10 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.40 4.58 8.83 -40.82 -0.36 4.22 16 32 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 312.02 15.07 4.70 4.70 Total: -1.00 -36.65 312.02 -5.72 -42.37 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -5.31 Total: -0.63 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -1.03 Total: -4.30 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: 0.85 Total: -46.39 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.08 Total: -12.33 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -36.65 -5.72 -42.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291192483.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.402 kcal (2) G-P(sol) polarization free energy of solvation -36.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds