Wall clock time and date at job start Sun Mar 29 2020 22:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30821 * 125.83685 * 2 1 4 4 N 1.40067 * 108.37450 * 180.02562 * 3 2 1 5 5 C 1.46495 * 126.05753 * 180.02562 * 4 3 2 6 6 C 1.35817 * 107.88916 * 359.77503 * 4 3 2 7 7 C 1.50696 * 126.21942 * 180.22603 * 6 4 3 8 8 C 1.35754 * 107.56582 * 0.36444 * 6 4 3 9 9 N 1.40761 * 126.08312 * 179.89857 * 8 6 4 10 10 C 1.34776 * 119.99963 * 120.29879 * 9 8 6 11 11 O 1.21304 * 120.00156 * 355.08425 * 10 9 8 12 12 C 1.50700 * 119.99891 * 174.82113 * 10 9 8 13 13 C 1.52999 * 109.47027 * 180.27303 * 12 10 9 14 14 C 1.50697 * 109.46903 * 179.97438 * 13 12 10 15 15 H 1.07999 * 120.00321 * 359.97438 * 14 13 12 16 16 C 1.37883 * 119.99929 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00013 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00223 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46963 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47217 * 119.99990 * 18 16 14 21 21 H 1.48500 * 109.47331 * 240.00338 * 18 16 14 22 22 H 1.09001 * 109.47125 * 286.84385 * 1 2 3 23 23 H 1.09000 * 109.47159 * 46.84076 * 1 2 3 24 24 H 1.09004 * 109.47263 * 166.83902 * 1 2 3 25 25 H 1.09001 * 109.47602 * 89.97303 * 5 4 3 26 26 H 1.09001 * 109.47001 * 209.97613 * 5 4 3 27 27 H 1.09006 * 109.46994 * 329.96999 * 5 4 3 28 28 H 1.09000 * 109.47606 * 270.16888 * 7 6 4 29 29 H 1.09003 * 109.47161 * 30.16170 * 7 6 4 30 30 H 1.09002 * 109.47511 * 150.16484 * 7 6 4 31 31 H 0.96998 * 119.99967 * 300.29595 * 9 8 6 32 32 H 1.09003 * 109.46952 * 300.26647 * 12 10 9 33 33 H 1.08997 * 109.47567 * 60.26630 * 12 10 9 34 34 H 1.08999 * 109.47158 * 299.99245 * 13 12 10 35 35 H 1.08998 * 109.47102 * 59.99652 * 13 12 10 36 36 H 0.96996 * 120.00161 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2729 1.0606 0.0000 4 7 3.6091 0.6402 -0.0006 5 6 4.7870 1.5112 -0.0003 6 6 3.6192 -0.7179 0.0041 7 6 4.8415 -1.5992 0.0101 8 6 2.3280 -1.1372 -0.0007 9 7 1.8910 -2.4753 -0.0002 10 6 1.1177 -2.9312 1.0051 11 8 0.8719 -2.2161 1.9536 12 6 0.5535 -4.3275 0.9480 13 6 -0.2869 -4.5895 2.1993 14 6 -0.8516 -5.9855 2.1419 15 1 -0.6334 -6.6220 1.2972 16 6 -1.6470 -6.4501 3.1679 17 7 -1.9133 -5.6749 4.1963 18 14 -2.3465 -8.1808 3.0971 19 1 -1.9013 -8.8438 1.8450 20 1 -1.8637 -8.9580 4.2667 21 1 -3.8299 -8.1167 3.1234 22 1 -0.3633 0.2978 0.9836 23 1 -0.3633 0.7029 -0.7496 24 1 -0.3634 -1.0007 -0.2340 25 1 5.0791 1.7270 1.0275 26 1 5.6083 1.0118 -0.5143 27 1 4.5500 2.4430 -0.5139 28 1 5.1406 -1.8128 -1.0161 29 1 5.6547 -1.0892 0.5267 30 1 4.6137 -2.5331 0.5241 31 1 2.1463 -3.0691 -0.7234 32 1 -0.0728 -4.4303 0.0617 33 1 1.3701 -5.0478 0.9013 34 1 0.3392 -4.4867 3.0856 35 1 -1.1036 -3.8691 2.2459 36 1 -2.4725 -6.0019 4.9182 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291192483.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:50 Heat of formation + Delta-G solvation = -2.720279 kcal Electronic energy + Delta-G solvation = -18135.005051 eV Core-core repulsion = 15233.325260 eV Total energy + Delta-G solvation = -2901.679791 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.44926 -40.33836 -35.93742 -35.46779 -34.87210 -33.04700 -31.97024 -30.46485 -28.29951 -27.23866 -26.06785 -23.83508 -21.64337 -21.01306 -20.39751 -18.78400 -18.12046 -17.47557 -16.70296 -16.53223 -16.35538 -16.16648 -14.94834 -14.89753 -14.44840 -14.34760 -14.16096 -13.98574 -13.89624 -13.47267 -13.27437 -13.18753 -12.92279 -12.83334 -12.80634 -12.41861 -11.90952 -11.87069 -11.59675 -11.24317 -10.84731 -10.59759 -10.52376 -10.03362 -9.06361 -8.14906 -6.28567 0.72754 1.40542 1.44906 1.45897 1.51948 1.59226 1.89037 2.38891 2.51307 3.18502 3.58683 3.66168 4.00350 4.13776 4.33045 4.40221 4.40846 4.56326 4.59928 4.63547 4.64696 4.71420 4.80089 4.88183 5.03080 5.08728 5.12594 5.31013 5.54050 5.68060 5.82535 5.90290 6.10614 6.21363 6.58044 6.70258 6.90700 7.41453 7.45828 8.97950 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.043769 B = 0.004224 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.574250 B = 6627.972880 C = 6918.572081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.069 3.931 3 N -0.324 5.324 4 N -0.375 5.375 5 C 0.095 3.905 6 C 0.084 3.916 7 C -0.086 4.086 8 C -0.039 4.039 9 N -0.637 5.637 10 C 0.514 3.486 11 O -0.575 6.575 12 C -0.115 4.115 13 C 0.042 3.958 14 C -0.539 4.539 15 H 0.078 0.922 16 C -0.008 4.008 17 N -0.939 5.939 18 Si 0.973 3.027 19 H -0.251 1.251 20 H -0.282 1.282 21 H -0.282 1.282 22 H 0.060 0.940 23 H 0.091 0.909 24 H 0.065 0.935 25 H 0.081 0.919 26 H 0.121 0.879 27 H 0.096 0.904 28 H 0.110 0.890 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.422 0.578 32 H 0.107 0.893 33 H 0.109 0.891 34 H -0.019 1.019 35 H -0.018 1.018 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.207 8.956 -14.488 23.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.097 4.097 3 N -0.148 5.148 4 N -0.159 5.159 5 C -0.044 4.044 6 C -0.046 4.046 7 C -0.144 4.144 8 C -0.142 4.142 9 N -0.287 5.287 10 C 0.303 3.697 11 O -0.452 6.452 12 C -0.154 4.154 13 C 0.004 3.996 14 C -0.577 4.577 15 H 0.096 0.904 16 C -0.205 4.205 17 N -0.579 5.579 18 Si 0.797 3.203 19 H -0.174 1.174 20 H -0.208 1.208 21 H -0.208 1.208 22 H 0.078 0.922 23 H 0.109 0.891 24 H 0.084 0.916 25 H 0.100 0.900 26 H 0.140 0.860 27 H 0.114 0.886 28 H 0.128 0.872 29 H 0.112 0.888 30 H 0.099 0.901 31 H 0.261 0.739 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.000 1.000 35 H 0.001 0.999 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 16.105 10.834 -13.677 23.744 hybrid contribution -0.719 -1.480 0.413 1.696 sum 15.386 9.354 -13.263 22.364 Atomic orbital electron populations 1.20063 0.86663 1.02985 1.02522 1.22595 0.97595 0.90619 0.98935 1.77178 0.87728 1.22436 1.27428 1.48629 1.05591 1.04395 1.57241 1.22237 0.82870 0.94774 1.04558 1.21617 0.97145 0.85323 1.00538 1.20584 0.91201 0.97396 1.05214 1.17330 0.91242 0.85661 1.19983 1.42665 1.52139 1.08476 1.25463 1.21540 0.77294 0.89913 0.80968 1.90676 1.59740 1.60027 1.34771 1.21620 1.01095 0.91161 1.01560 1.18691 0.93453 0.95265 0.92144 1.21755 1.30290 0.99649 1.06039 0.90420 1.26130 0.96890 1.02493 0.94964 1.70190 1.38845 1.38696 1.10164 0.85286 0.77726 0.78570 0.78729 1.17445 1.20762 1.20799 0.92158 0.89056 0.91610 0.90011 0.86028 0.88570 0.87203 0.88755 0.90144 0.73932 0.87498 0.87337 1.00025 0.99928 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.07 9.65 71.24 0.69 -1.38 16 2 C 0.07 2.35 6.90 43.20 0.30 2.65 16 3 N -0.32 -10.46 12.56 -47.15 -0.59 -11.05 16 4 N -0.37 -9.19 4.04 -355.03 -1.43 -10.62 16 5 C 0.09 1.20 11.12 127.77 1.42 2.62 16 6 C 0.08 2.04 6.98 41.36 0.29 2.33 16 7 C -0.09 -1.20 9.87 71.23 0.70 -0.49 16 8 C -0.04 -1.19 5.92 37.62 0.22 -0.97 16 9 N -0.64 -18.53 5.26 -304.04 -1.60 -20.13 16 10 C 0.51 20.16 6.90 87.66 0.60 20.77 16 11 O -0.57 -28.96 15.16 -3.11 -0.05 -29.00 16 12 C -0.11 -4.52 5.64 29.85 0.17 -4.35 16 13 C 0.04 2.34 4.26 29.85 0.13 2.47 16 14 C -0.54 -30.50 9.11 25.60 0.23 -30.27 16 15 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 16 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 17 N -0.94 -59.84 13.29 21.45 0.28 -59.56 16 18 Si 0.97 44.23 29.54 68.60 2.03 46.26 16 19 H -0.25 -10.45 7.11 99.48 0.71 -9.74 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 23 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 24 H 0.06 2.18 7.35 -2.38 -0.02 2.17 16 25 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.12 0.65 7.71 -2.39 -0.02 0.63 16 27 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.11 0.91 8.14 -2.39 -0.02 0.90 16 29 H 0.09 0.91 7.77 -2.39 -0.02 0.89 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.42 8.62 8.83 -92.71 -0.82 7.80 16 32 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 33 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 34 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 35 H -0.02 -1.12 8.10 -2.39 -0.02 -1.14 16 36 H 0.26 15.61 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -84.49 312.02 4.11 -80.37 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 0.26 Total: 10.34 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: 5.22 Total: -6.60 kcal Atomic # 7 Polarization: -98.03 SS G_CDS: -3.34 Total: -101.37 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.05 Total: -29.00 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -84.49 4.11 -80.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291192483.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.651 kcal (2) G-P(sol) polarization free energy of solvation -84.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds