Wall clock time and date at job start Sun Mar 29 2020 23:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50693 * 120.00202 * 2 1 4 4 N 1.46898 * 109.47479 * 125.24459 * 3 2 1 5 5 C 1.46905 * 110.99876 * 66.20681 * 4 3 2 6 6 C 1.50701 * 109.46930 * 66.04431 * 5 4 3 7 7 H 1.07991 * 120.00260 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99736 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00046 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99926 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.46723 * 90.00152 * 10 8 6 12 12 H 1.48495 * 109.47047 * 210.00214 * 10 8 6 13 13 H 1.48496 * 109.46986 * 330.00634 * 10 8 6 14 14 C 1.46898 * 111.00037 * 302.25729 * 4 3 2 15 15 H 1.09000 * 109.47510 * 66.81091 * 14 4 3 16 16 C 1.53001 * 109.47192 * 186.80877 * 14 4 3 17 17 C 1.50700 * 109.47287 * 306.80840 * 14 4 3 18 18 N 1.29949 * 126.28514 * 313.87601 * 17 14 4 19 19 O 1.21300 * 110.24887 * 180.02562 * 18 17 14 20 20 C 1.33642 * 109.81291 * 0.02562 * 19 18 17 21 21 C 1.50698 * 126.55094 * 180.02562 * 20 19 18 22 22 N 1.31127 * 106.89453 * 359.97438 * 20 19 18 23 23 H 1.08003 * 119.99829 * 359.97438 * 1 2 3 24 24 H 1.07999 * 120.00103 * 180.02562 * 1 2 3 25 25 H 1.07994 * 119.99619 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.47057 * 5.24714 * 3 2 1 27 27 H 1.08993 * 109.47445 * 245.24863 * 3 2 1 28 28 H 1.08995 * 109.47210 * 186.04999 * 5 4 3 29 29 H 1.09011 * 109.46730 * 306.05062 * 5 4 3 30 30 H 0.97001 * 119.99576 * 180.02562 * 9 8 6 31 31 H 1.09004 * 109.47457 * 179.97438 * 16 14 4 32 32 H 1.09004 * 109.47177 * 299.99772 * 16 14 4 33 33 H 1.09002 * 109.47156 * 60.00022 * 16 14 4 34 34 H 1.09006 * 109.46830 * 359.97438 * 21 20 19 35 35 H 1.09002 * 109.46776 * 119.97148 * 21 20 19 36 36 H 1.08998 * 109.47637 * 239.97600 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 3.0005 1.3295 1.1311 5 6 4.0552 0.3208 0.9629 6 6 4.9133 0.6840 -0.2215 7 1 4.6971 1.5751 -0.7920 8 6 5.9744 -0.1215 -0.5769 9 7 6.2374 -1.2070 0.1175 10 14 7.0385 0.3290 -2.0446 11 1 8.1630 1.1886 -1.5954 12 1 7.5779 -0.9085 -2.6634 13 1 6.2205 1.0651 -3.0417 14 6 2.2930 1.1439 2.4050 15 1 1.8797 0.1361 2.4476 16 6 3.2703 1.3438 3.5651 17 6 1.1758 2.1498 2.5104 18 7 1.2570 3.4197 2.2468 19 8 0.1846 3.9559 2.4303 20 6 -0.7096 3.0517 2.8414 21 6 -2.1560 3.3084 3.1774 22 7 -0.0880 1.8984 2.8953 23 1 -0.5400 0.9354 0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 1.8499 -0.9353 0.0004 26 1 1.3590 2.1314 0.0940 27 1 2.6178 1.4046 -0.9332 28 1 4.6716 0.2863 1.8612 29 1 3.6006 -0.6559 0.7964 30 1 6.9842 -1.7735 -0.1323 31 1 2.7452 1.2065 4.5104 32 1 4.0784 0.6161 3.4889 33 1 3.6836 2.3515 3.5225 34 1 -2.3800 4.3657 3.0353 35 1 -2.7922 2.7112 2.5241 36 1 -2.3421 3.0340 4.2157 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292384974.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:31:23 Heat of formation + Delta-G solvation = 97.446012 kcal Electronic energy + Delta-G solvation = -18930.227632 eV Core-core repulsion = 16032.891377 eV Total energy + Delta-G solvation = -2897.336255 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.33825 -38.12821 -35.48902 -33.65759 -33.03913 -32.25323 -29.99968 -28.74551 -27.16261 -24.51956 -24.46988 -22.98719 -21.64818 -20.12185 -18.66726 -17.93531 -17.15861 -16.38723 -15.44544 -14.87354 -14.60831 -14.29006 -13.99067 -13.81874 -13.54670 -13.22288 -13.13071 -12.16831 -11.97249 -11.89456 -11.58631 -11.51360 -11.21912 -11.08454 -10.87754 -10.83123 -10.73215 -10.59435 -10.38561 -9.87211 -9.57995 -9.28262 -8.84353 -8.43840 -7.32799 -6.04600 -4.05176 1.40369 2.51332 2.74574 3.02184 3.32317 3.38251 3.42044 3.79559 4.37056 4.42404 4.84007 5.07795 5.11767 5.22227 5.31858 5.42093 5.49296 5.63615 5.68928 5.79585 5.95167 5.98378 6.09134 6.25516 6.34189 6.40310 6.58492 6.65333 7.04005 7.07626 7.30736 7.32368 7.75966 8.01444 8.11359 8.45037 8.53248 9.01311 9.58550 11.06224 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.033592 B = 0.005772 C = 0.005573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.324915 B = 4849.881590 C = 5023.066721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.167 4.167 3 C 0.087 3.913 4 N -0.517 5.517 5 C 0.188 3.812 6 C -0.505 4.505 7 H 0.063 0.937 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.897 3.103 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.169 3.831 15 H 0.064 0.936 16 C -0.140 4.140 17 C 0.193 3.807 18 N -0.359 5.359 19 O 0.071 5.929 20 C 0.154 3.846 21 C -0.056 4.056 22 N -0.477 5.477 23 H 0.081 0.919 24 H 0.089 0.911 25 H 0.114 0.886 26 H 0.051 0.949 27 H 0.096 0.904 28 H 0.039 0.961 29 H -0.001 1.001 30 H 0.261 0.739 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.202 6.304 5.815 17.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.187 4.187 3 C -0.041 4.041 4 N -0.241 5.241 5 C 0.064 3.936 6 C -0.544 4.544 7 H 0.081 0.919 8 C -0.144 4.144 9 N -0.538 5.538 10 Si 0.725 3.275 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.199 1.199 14 C 0.058 3.942 15 H 0.082 0.918 16 C -0.198 4.198 17 C -0.080 4.080 18 N -0.065 5.065 19 O 0.011 5.989 20 C -0.067 4.067 21 C -0.114 4.114 22 N -0.211 5.211 23 H 0.100 0.900 24 H 0.107 0.893 25 H 0.131 0.869 26 H 0.069 0.931 27 H 0.114 0.886 28 H 0.057 0.943 29 H 0.017 0.983 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.117 0.883 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.035 6.578 5.643 16.495 hybrid contribution 0.064 -0.679 -0.814 1.062 sum -13.971 5.899 4.829 15.915 Atomic orbital electron populations 1.23544 0.95811 1.00454 1.03813 1.23862 0.96260 1.01276 0.97302 1.21276 0.93806 0.92267 0.96717 1.62512 1.11061 1.52452 0.98086 1.19889 0.87842 0.87659 0.98212 1.21103 1.12092 1.08913 1.12288 0.91870 1.24950 0.97459 0.94954 0.97061 1.69954 1.29689 1.14149 1.39970 0.86501 0.80637 0.77719 0.82603 1.20610 1.21337 1.19883 1.19847 0.88241 0.92304 0.93802 0.91824 1.21863 0.99028 1.03858 0.95059 1.25806 0.92960 0.91345 0.97932 1.74744 1.01215 1.10796 1.19770 1.85339 1.14637 1.37767 1.61154 1.28753 0.97611 0.83742 0.96587 1.20272 0.82710 1.04474 1.03969 1.71856 1.04389 1.24332 1.20571 0.90043 0.89256 0.86854 0.93098 0.88590 0.94295 0.98310 0.92909 0.93008 0.90129 0.91584 0.88895 0.88311 0.88319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.28 14.32 29.01 0.42 -2.87 16 2 C -0.17 -3.20 7.64 -36.03 -0.28 -3.48 16 3 C 0.09 1.82 5.24 -4.98 -0.03 1.79 16 4 N -0.52 -11.46 4.56 -230.91 -1.05 -12.51 16 5 C 0.19 4.79 4.43 -4.97 -0.02 4.77 16 6 C -0.51 -14.03 8.43 -34.44 -0.29 -14.32 16 7 H 0.06 1.76 7.14 -52.49 -0.37 1.39 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -26.25 13.29 55.43 0.74 -25.51 16 10 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 14 C 0.17 3.30 2.15 -68.87 -0.15 3.15 16 15 H 0.06 1.28 7.29 -51.93 -0.38 0.90 16 16 C -0.14 -2.53 9.05 37.16 0.34 -2.19 16 17 C 0.19 3.50 5.41 -156.38 -0.85 2.66 16 18 N -0.36 -6.56 11.69 30.90 0.36 -6.19 16 19 O 0.07 1.06 11.31 18.10 0.20 1.26 16 20 C 0.15 1.95 8.51 -13.06 -0.11 1.83 16 21 C -0.06 -0.36 10.51 36.00 0.38 0.02 16 22 N -0.48 -7.61 11.55 -9.87 -0.11 -7.73 16 23 H 0.08 1.31 7.84 -52.48 -0.41 0.90 16 24 H 0.09 1.33 8.06 -52.49 -0.42 0.90 16 25 H 0.11 2.34 6.84 -52.49 -0.36 1.98 16 26 H 0.05 1.03 6.30 -51.93 -0.33 0.70 16 27 H 0.10 2.15 6.71 -51.93 -0.35 1.80 16 28 H 0.04 1.04 5.94 -51.93 -0.31 0.73 16 29 H 0.00 -0.02 6.43 -51.92 -0.33 -0.36 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 1.52 6.27 -51.93 -0.33 1.19 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 302.24 15.07 4.55 4.55 Total: -1.00 -31.26 302.24 -5.86 -37.12 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -4.84 Total: -0.50 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -0.69 Total: -7.14 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: -0.07 Total: -51.94 kcal Atomic # 8 Polarization: 1.06 SS G_CDS: 0.20 Total: 1.26 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.26 -5.86 -37.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292384974.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.566 kcal (2) G-P(sol) polarization free energy of solvation -31.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds