Wall clock time and date at job start Sun Mar 29 2020 23:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50693 * 120.00202 * 2 1 4 4 N 1.46898 * 109.47479 * 125.24459 * 3 2 1 5 5 C 1.46905 * 110.99876 * 66.20681 * 4 3 2 6 6 C 1.50701 * 109.46930 * 66.04431 * 5 4 3 7 7 H 1.07991 * 120.00260 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99736 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00046 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99926 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.46723 * 90.00152 * 10 8 6 12 12 H 1.48495 * 109.47047 * 210.00214 * 10 8 6 13 13 H 1.48496 * 109.46986 * 330.00634 * 10 8 6 14 14 C 1.46898 * 111.00037 * 302.25729 * 4 3 2 15 15 H 1.09000 * 109.47510 * 66.81091 * 14 4 3 16 16 C 1.53001 * 109.47192 * 186.80877 * 14 4 3 17 17 C 1.50700 * 109.47287 * 306.80840 * 14 4 3 18 18 N 1.29949 * 126.28514 * 313.87601 * 17 14 4 19 19 O 1.21300 * 110.24887 * 180.02562 * 18 17 14 20 20 C 1.33642 * 109.81291 * 0.02562 * 19 18 17 21 21 C 1.50698 * 126.55094 * 180.02562 * 20 19 18 22 22 N 1.31127 * 106.89453 * 359.97438 * 20 19 18 23 23 H 1.08003 * 119.99829 * 359.97438 * 1 2 3 24 24 H 1.07999 * 120.00103 * 180.02562 * 1 2 3 25 25 H 1.07994 * 119.99619 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.47057 * 5.24714 * 3 2 1 27 27 H 1.08993 * 109.47445 * 245.24863 * 3 2 1 28 28 H 1.08995 * 109.47210 * 186.04999 * 5 4 3 29 29 H 1.09011 * 109.46730 * 306.05062 * 5 4 3 30 30 H 0.97001 * 119.99576 * 180.02562 * 9 8 6 31 31 H 1.09004 * 109.47457 * 179.97438 * 16 14 4 32 32 H 1.09004 * 109.47177 * 299.99772 * 16 14 4 33 33 H 1.09002 * 109.47156 * 60.00022 * 16 14 4 34 34 H 1.09006 * 109.46830 * 359.97438 * 21 20 19 35 35 H 1.09002 * 109.46776 * 119.97148 * 21 20 19 36 36 H 1.08998 * 109.47637 * 239.97600 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 3.0005 1.3295 1.1311 5 6 4.0552 0.3208 0.9629 6 6 4.9133 0.6840 -0.2215 7 1 4.6971 1.5751 -0.7920 8 6 5.9744 -0.1215 -0.5769 9 7 6.2374 -1.2070 0.1175 10 14 7.0385 0.3290 -2.0446 11 1 8.1630 1.1886 -1.5954 12 1 7.5779 -0.9085 -2.6634 13 1 6.2205 1.0651 -3.0417 14 6 2.2930 1.1439 2.4050 15 1 1.8797 0.1361 2.4476 16 6 3.2703 1.3438 3.5651 17 6 1.1758 2.1498 2.5104 18 7 1.2570 3.4197 2.2468 19 8 0.1846 3.9559 2.4303 20 6 -0.7096 3.0517 2.8414 21 6 -2.1560 3.3084 3.1774 22 7 -0.0880 1.8984 2.8953 23 1 -0.5400 0.9354 0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 1.8499 -0.9353 0.0004 26 1 1.3590 2.1314 0.0940 27 1 2.6178 1.4046 -0.9332 28 1 4.6716 0.2863 1.8612 29 1 3.6006 -0.6559 0.7964 30 1 6.9842 -1.7735 -0.1323 31 1 2.7452 1.2065 4.5104 32 1 4.0784 0.6161 3.4889 33 1 3.6836 2.3515 3.5225 34 1 -2.3800 4.3657 3.0353 35 1 -2.7922 2.7112 2.5241 36 1 -2.3421 3.0340 4.2157 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292384974.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:31:22 Heat of formation + Delta-G solvation = 74.257173 kcal Electronic energy + Delta-G solvation = -18931.233175 eV Core-core repulsion = 16032.891377 eV Total energy + Delta-G solvation = -2898.341798 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -46.57585 -39.76864 -36.75184 -35.00371 -34.90099 -33.76210 -31.60067 -29.62796 -29.06744 -26.27560 -25.98315 -24.30528 -23.29375 -21.54863 -20.21967 -19.18895 -18.57368 -18.26847 -17.07008 -16.77428 -15.90049 -15.77689 -15.64515 -15.26230 -14.72072 -14.19387 -14.10805 -13.94366 -13.52354 -13.28525 -13.03723 -12.90351 -12.84932 -12.75145 -12.58507 -12.40073 -12.26398 -12.15999 -11.98317 -11.79383 -11.38284 -10.73674 -10.60500 -10.35285 -9.11422 -8.20757 -6.28988 0.31136 1.22613 1.31021 1.40140 1.41147 1.51942 2.08479 2.38350 2.60211 3.02154 3.12854 3.42096 3.92222 3.92712 4.07493 4.18119 4.31665 4.41203 4.58893 4.65555 4.70659 4.71441 4.76005 4.87487 4.94549 5.05560 5.13610 5.21531 5.22613 5.26887 5.58515 5.61814 5.73274 6.03411 6.22220 6.50184 6.83945 7.34461 7.39168 8.90130 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.033592 B = 0.005772 C = 0.005573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.324915 B = 4849.881590 C = 5023.066721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.196 4.196 3 C 0.097 3.903 4 N -0.526 5.526 5 C 0.206 3.794 6 C -0.521 4.521 7 H 0.056 0.944 8 C 0.008 3.992 9 N -0.930 5.930 10 Si 0.964 3.036 11 H -0.274 1.274 12 H -0.281 1.281 13 H -0.268 1.268 14 C 0.170 3.830 15 H 0.056 0.944 16 C -0.133 4.133 17 C 0.181 3.819 18 N -0.388 5.388 19 O 0.075 5.925 20 C 0.176 3.824 21 C -0.056 4.056 22 N -0.500 5.500 23 H 0.092 0.908 24 H 0.113 0.887 25 H 0.091 0.909 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.021 0.979 29 H -0.023 1.023 30 H 0.265 0.735 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.449 7.327 5.814 19.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.216 4.216 3 C -0.031 4.031 4 N -0.250 5.250 5 C 0.081 3.919 6 C -0.559 4.559 7 H 0.074 0.926 8 C -0.190 4.190 9 N -0.570 5.570 10 Si 0.789 3.211 11 H -0.200 1.200 12 H -0.206 1.206 13 H -0.193 1.193 14 C 0.060 3.940 15 H 0.073 0.927 16 C -0.191 4.191 17 C -0.092 4.092 18 N -0.095 5.095 19 O 0.015 5.985 20 C -0.044 4.044 21 C -0.114 4.114 22 N -0.234 5.234 23 H 0.111 0.889 24 H 0.131 0.869 25 H 0.110 0.890 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.039 0.961 29 H -0.005 1.005 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.140 0.860 35 H 0.135 0.865 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -16.305 7.601 5.649 18.856 hybrid contribution 0.566 -0.948 -0.746 1.333 sum -15.739 6.653 4.903 17.777 Atomic orbital electron populations 1.23733 0.94597 1.02015 0.99331 1.23528 0.97149 0.99444 1.01440 1.21093 0.93405 0.93507 0.95066 1.62378 1.11666 1.51070 0.99897 1.19500 0.88319 0.87481 0.96607 1.21363 1.12789 1.08759 1.13030 0.92566 1.25777 0.98675 0.94766 0.99805 1.70064 1.30337 1.15077 1.41536 0.85460 0.78796 0.77658 0.79176 1.19952 1.20608 1.19289 1.19735 0.88971 0.92667 0.92630 0.92667 1.21791 0.98611 1.02728 0.95947 1.25425 0.93444 0.91090 0.99278 1.74727 1.03003 1.10944 1.20821 1.85298 1.14311 1.37774 1.61158 1.29961 0.98962 0.82193 0.93306 1.20730 0.78439 1.06821 1.05365 1.71846 1.03586 1.25917 1.22080 0.88929 0.86866 0.89043 0.92364 0.91093 0.96146 1.00512 0.92663 0.90471 0.91662 0.92422 0.86042 0.86544 0.86310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.97 14.32 67.78 0.97 -4.00 16 2 C -0.20 -7.59 7.64 25.64 0.20 -7.40 16 3 C 0.10 4.14 5.24 85.56 0.45 4.59 16 4 N -0.53 -24.19 4.56 -884.47 -4.04 -28.22 16 5 C 0.21 11.04 4.43 85.56 0.38 11.42 16 6 C -0.52 -29.93 8.43 25.60 0.22 -29.72 16 7 H 0.06 3.24 7.14 -2.92 -0.02 3.22 16 8 C 0.01 0.47 5.46 84.65 0.46 0.93 16 9 N -0.93 -55.67 13.29 21.45 0.28 -55.38 16 10 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 14 C 0.17 6.80 2.15 44.17 0.09 6.89 16 15 H 0.06 2.29 7.29 -2.39 -0.02 2.27 16 16 C -0.13 -4.92 9.05 71.98 0.65 -4.27 16 17 C 0.18 6.45 5.41 138.46 0.75 7.20 16 18 N -0.39 -13.89 11.69 -60.32 -0.71 -14.59 16 19 O 0.08 2.11 11.31 74.84 0.85 2.96 16 20 C 0.18 3.92 8.51 88.38 0.75 4.67 16 21 C -0.06 -0.46 10.51 71.24 0.75 0.29 16 22 N -0.50 -15.01 11.55 -303.21 -3.50 -18.51 16 23 H 0.09 2.72 7.84 -2.91 -0.02 2.70 16 24 H 0.11 3.03 8.06 -2.91 -0.02 3.00 16 25 H 0.09 3.95 6.84 -2.91 -0.02 3.93 16 26 H 0.06 2.37 6.30 -2.39 -0.02 2.35 16 27 H 0.07 3.31 6.71 -2.39 -0.02 3.30 16 28 H 0.02 1.16 5.94 -2.39 -0.01 1.15 16 29 H -0.02 -1.30 6.43 -2.38 -0.02 -1.31 16 30 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 31 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.06 2.58 6.27 -2.38 -0.01 2.57 16 33 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.12 0.38 8.14 -2.38 -0.02 0.36 16 35 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -69.47 302.24 1.65 -67.82 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 1.07 Total: 8.31 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: 5.67 Total: -9.38 kcal Atomic # 7 Polarization: -108.76 SS G_CDS: -7.96 Total: -116.71 kcal Atomic # 8 Polarization: 2.11 SS G_CDS: 0.85 Total: 2.96 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -69.47 1.65 -67.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292384974.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.074 kcal (2) G-P(sol) polarization free energy of solvation -69.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds