Wall clock time and date at job start Sun Mar 29 2020 23:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35359 * 126.38361 * 2 1 4 4 C 1.41501 * 105.50052 * 180.15495 * 3 2 1 5 5 C 1.47716 * 126.51672 * 179.90216 * 4 3 2 6 6 O 1.21573 * 120.00017 * 359.71102 * 5 4 3 7 7 N 1.34777 * 119.99706 * 179.70800 * 5 4 3 8 8 C 1.46499 * 119.99665 * 179.72381 * 7 5 4 9 9 C 1.53004 * 109.47198 * 180.27868 * 8 7 5 10 10 C 1.52997 * 109.47000 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.46940 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00043 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00213 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00116 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00201 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47129 * 60.00316 * 15 13 11 17 17 H 1.48498 * 109.47276 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47240 * 300.00255 * 15 13 11 19 19 N 1.31802 * 106.96561 * 359.63577 * 4 3 2 20 20 N 1.28471 * 110.07361 * 0.22798 * 19 4 3 21 21 C 1.46505 * 124.88609 * 179.97438 * 20 19 4 22 22 H 1.08990 * 109.47064 * 270.24009 * 1 2 3 23 23 H 1.08996 * 109.46975 * 30.24727 * 1 2 3 24 24 H 1.09006 * 109.46683 * 150.23738 * 1 2 3 25 25 H 1.07995 * 127.25363 * 0.03648 * 3 2 1 26 26 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 27 27 H 1.09009 * 109.47454 * 300.27637 * 8 7 5 28 28 H 1.08998 * 109.47492 * 60.27932 * 8 7 5 29 29 H 1.08995 * 109.46638 * 300.00121 * 9 8 7 30 30 H 1.09006 * 109.47139 * 60.00254 * 9 8 7 31 31 H 1.08995 * 109.47672 * 299.99669 * 10 9 8 32 32 H 1.09007 * 109.47288 * 60.00489 * 10 9 8 33 33 H 0.97000 * 120.00572 * 179.97438 * 14 13 11 34 34 H 1.08994 * 109.46929 * 90.02302 * 21 20 19 35 35 H 1.08999 * 109.46904 * 210.02620 * 21 20 19 36 36 H 1.09004 * 109.46669 * 330.02327 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6321 0.5853 -0.0037 5 6 4.8765 1.3812 -0.0071 6 8 4.8213 2.5957 -0.0123 7 7 6.0730 0.7609 -0.0045 8 6 7.3072 1.5502 -0.0141 9 6 8.5141 0.6097 -0.0158 10 6 9.8029 1.4340 -0.0264 11 6 10.9916 0.5077 -0.0274 12 1 10.8427 -0.5620 -0.0215 13 6 12.2694 1.0257 -0.0359 14 7 12.4508 2.3282 -0.0425 15 14 13.7428 -0.1225 -0.0378 16 1 13.6971 -0.9843 -1.2464 17 1 14.9938 0.6775 -0.0468 18 1 13.7088 -0.9737 1.1786 19 7 3.5420 -0.7296 0.0024 20 7 2.3081 -1.0871 0.0046 21 6 1.8377 -2.4746 0.0107 22 1 -0.3633 0.0043 1.0276 23 1 -0.3633 0.8877 -0.5177 24 1 -0.3633 -0.8922 -0.5102 25 1 2.0058 2.1259 0.0005 26 1 6.1171 -0.2081 -0.0008 27 1 7.3322 2.1749 -0.9071 28 1 7.3409 2.1828 0.8729 29 1 8.4891 -0.0149 0.8771 30 1 8.4805 -0.0229 -0.9029 31 1 9.8277 2.0583 -0.9195 32 1 9.8368 2.0669 0.8605 33 1 13.3497 2.6927 -0.0481 34 1 1.7212 -2.8142 1.0398 35 1 0.8781 -2.5351 -0.5027 36 1 2.5638 -3.1066 -0.5006 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302997501.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:33 Heat of formation + Delta-G solvation = -2.993287 kcal Electronic energy + Delta-G solvation = -17344.432456 eV Core-core repulsion = 14442.740827 eV Total energy + Delta-G solvation = -2901.691630 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.68977 -40.49977 -37.00761 -35.24755 -34.54840 -33.58997 -32.94663 -29.22600 -28.26650 -27.58268 -25.31378 -23.60145 -22.35443 -21.96580 -20.49585 -18.60551 -18.07772 -17.49485 -17.43131 -16.77298 -16.61939 -16.39976 -15.34567 -15.16771 -14.92930 -14.28629 -14.03828 -13.93374 -13.76580 -13.65005 -13.42318 -13.30800 -12.95430 -12.72168 -12.57447 -12.42943 -11.87654 -11.70034 -11.69606 -11.31476 -11.10392 -10.54913 -10.32335 -9.98089 -9.91233 -8.19347 -6.31153 0.47507 1.10159 1.41207 1.44774 1.52578 1.55990 2.16516 2.31584 2.42793 3.14020 3.30953 3.74928 3.93210 4.14807 4.18381 4.24400 4.37488 4.52658 4.56582 4.60436 4.68165 4.81648 4.91617 4.94283 5.03547 5.10936 5.14404 5.31180 5.37757 5.50886 5.69605 5.83426 5.89221 6.21960 6.41602 6.85384 6.88141 7.11695 7.38174 8.92725 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.045616 B = 0.003265 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.677024 B = 8573.379106 C = 9150.689274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.023 3.977 3 C -0.208 4.208 4 C -0.043 4.043 5 C 0.595 3.405 6 O -0.577 6.577 7 N -0.704 5.704 8 C 0.128 3.872 9 C -0.102 4.102 10 C 0.025 3.975 11 C -0.544 4.544 12 H 0.065 0.935 13 C -0.003 4.003 14 N -0.935 5.935 15 Si 0.969 3.031 16 H -0.265 1.265 17 H -0.285 1.285 18 H -0.266 1.266 19 N -0.277 5.277 20 N -0.277 5.277 21 C 0.071 3.929 22 H 0.094 0.906 23 H 0.093 0.907 24 H 0.097 0.903 25 H 0.161 0.839 26 H 0.414 0.586 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.066 0.934 31 H -0.006 1.006 32 H -0.006 1.006 33 H 0.264 0.736 34 H 0.102 0.898 35 H 0.129 0.871 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.475 -11.962 0.055 29.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.102 4.102 3 C -0.236 4.236 4 C -0.201 4.201 5 C 0.381 3.619 6 O -0.455 6.455 7 N -0.355 5.355 8 C 0.005 3.995 9 C -0.139 4.139 10 C -0.013 4.013 11 C -0.582 4.582 12 H 0.084 0.916 13 C -0.201 4.201 14 N -0.575 5.575 15 Si 0.793 3.207 16 H -0.190 1.190 17 H -0.210 1.210 18 H -0.190 1.190 19 N -0.114 5.114 20 N -0.066 5.066 21 C -0.067 4.067 22 H 0.112 0.888 23 H 0.112 0.888 24 H 0.116 0.884 25 H 0.178 0.822 26 H 0.251 0.749 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.013 0.987 32 H 0.013 0.987 33 H 0.073 0.927 34 H 0.121 0.879 35 H 0.147 0.853 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -26.747 -12.085 0.056 29.350 hybrid contribution 0.887 0.384 0.017 0.967 sum -25.860 -11.700 0.073 28.384 Atomic orbital electron populations 1.20545 0.82929 1.05582 1.04753 1.22001 0.97313 0.85524 1.05330 1.21733 0.90263 1.00807 1.10839 1.21693 0.94863 0.90518 1.12991 1.17320 0.82614 0.86243 0.75689 1.90747 1.87525 1.14659 1.52589 1.45877 1.04877 1.11300 1.73410 1.21355 0.82605 0.94329 1.01209 1.21604 0.92550 0.97771 1.02021 1.18931 0.92109 0.94975 0.95243 1.21650 0.91958 0.93823 1.50743 0.91644 1.26031 1.02614 0.96726 0.94693 1.70104 1.22842 1.13020 1.51534 0.85450 0.77540 0.78482 0.79260 1.19024 1.21001 1.19037 1.73462 1.03730 1.14077 1.20148 1.45866 1.01931 1.09448 1.49353 1.22660 1.03131 0.74632 1.06245 0.88791 0.88800 0.88441 0.82184 0.74906 0.92611 0.92604 0.91526 0.91530 0.98741 0.98750 0.92740 0.87927 0.85256 0.88094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 10.10 71.24 0.72 0.23 16 2 C 0.02 0.40 6.92 41.40 0.29 0.68 16 3 C -0.21 -5.24 10.73 22.41 0.24 -5.00 16 4 C -0.04 -1.30 7.13 42.46 0.30 -1.00 16 5 C 0.60 21.83 7.83 86.75 0.68 22.51 16 6 O -0.58 -24.98 16.93 -3.95 -0.07 -25.05 16 7 N -0.70 -24.25 5.55 -466.08 -2.59 -26.84 16 8 C 0.13 5.04 5.67 86.38 0.49 5.53 16 9 C -0.10 -4.23 5.27 30.59 0.16 -4.07 16 10 C 0.03 1.36 4.97 29.85 0.15 1.50 16 11 C -0.54 -31.25 9.11 25.60 0.23 -31.02 16 12 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 13 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 14 N -0.93 -58.15 13.29 21.45 0.28 -57.87 16 15 Si 0.97 44.64 29.54 68.60 2.03 46.67 16 16 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 17 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 19 N -0.28 -7.20 11.67 -48.17 -0.56 -7.76 16 20 N -0.28 -4.92 3.70 -355.92 -1.32 -6.24 16 21 C 0.07 0.44 11.11 127.77 1.42 1.86 16 22 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 23 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 24 H 0.10 0.09 7.00 -2.38 -0.02 0.07 16 25 H 0.16 3.85 8.06 -2.91 -0.02 3.83 16 26 H 0.41 12.45 8.20 -92.71 -0.76 11.69 16 27 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 28 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.07 2.62 8.14 -2.38 -0.02 2.60 16 31 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 32 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 33 H 0.26 15.43 8.31 -92.71 -0.77 14.65 16 34 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.13 -0.09 6.95 -2.39 -0.02 -0.11 16 36 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 Total: -1.00 -78.48 313.96 3.24 -75.24 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 0.32 Total: 10.33 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: 5.14 Total: -8.48 kcal Atomic # 7 Polarization: -94.52 SS G_CDS: -4.18 Total: -98.71 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.07 Total: -25.05 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -78.48 3.24 -75.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302997501.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.247 kcal (2) G-P(sol) polarization free energy of solvation -78.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds