Wall clock time and date at job start Sun Mar 29 2020 23:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39669 * 127.32090 * 2 1 4 4 N 1.30865 * 107.86764 * 179.97438 * 3 2 1 5 5 N 1.28443 * 110.92271 * 0.02562 * 4 3 2 6 6 H 0.97004 * 125.19314 * 179.97438 * 5 4 3 7 7 C 1.36607 * 109.61924 * 359.75985 * 5 4 3 8 8 C 1.47156 * 126.88160 * 180.24216 * 7 5 4 9 9 O 1.21629 * 120.00393 * 72.13744 * 8 7 5 10 10 N 1.34786 * 120.00029 * 252.13286 * 8 7 5 11 11 C 1.46498 * 119.99700 * 5.75469 * 10 8 7 12 12 C 1.50694 * 109.46914 * 90.00190 * 11 10 8 13 13 H 1.07993 * 120.00541 * 0.02562 * 12 11 10 14 14 C 1.37888 * 119.99691 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99849 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99711 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47308 * 89.99980 * 16 14 12 18 18 H 1.48497 * 109.46999 * 210.00048 * 16 14 12 19 19 H 1.48503 * 109.47203 * 329.99958 * 16 14 12 20 20 C 1.46498 * 120.00113 * 185.75644 * 10 8 7 21 21 C 1.53001 * 109.47013 * 124.66991 * 20 10 8 22 22 C 1.53001 * 109.46965 * 244.67246 * 20 10 8 23 23 H 1.08993 * 109.47026 * 90.02274 * 1 2 3 24 24 H 1.09000 * 109.46990 * 330.01454 * 1 2 3 25 25 H 1.09005 * 109.46835 * 210.02255 * 1 2 3 26 26 H 1.08000 * 126.06974 * 359.94877 * 3 2 1 27 27 H 1.09004 * 109.46952 * 210.00265 * 11 10 8 28 28 H 1.08995 * 109.47330 * 330.00029 * 11 10 8 29 29 H 0.97000 * 119.99676 * 179.97438 * 15 14 12 30 30 H 1.09007 * 109.47154 * 4.67360 * 20 10 8 31 31 H 1.09001 * 109.46894 * 60.00656 * 21 20 10 32 32 H 1.09004 * 109.47078 * 179.97438 * 21 20 10 33 33 H 1.08994 * 109.47220 * 299.99684 * 21 20 10 34 34 H 1.08999 * 109.46706 * 60.00435 * 22 20 10 35 35 H 1.09001 * 109.46800 * 179.97438 * 22 20 10 36 36 H 1.08992 * 109.47121 * 299.99556 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3538 1.1107 0.0000 4 7 3.5877 0.6749 0.0006 5 7 3.6207 -0.6091 0.0004 6 1 4.4275 -1.1477 0.0004 7 6 2.3461 -1.1006 0.0051 8 6 1.9456 -2.5167 0.0114 9 8 2.0932 -3.1859 1.0163 10 7 1.4152 -3.0720 -1.0962 11 6 1.3533 -2.3046 -2.3426 12 6 2.6133 -2.5338 -3.1367 13 1 3.3831 -3.1861 -2.7518 14 6 2.7830 -1.9113 -4.3553 15 7 1.8454 -1.1173 -4.8243 16 14 4.3453 -2.1948 -5.3394 17 1 4.1580 -3.3601 -6.2406 18 1 4.6467 -0.9867 -6.1484 19 1 5.4731 -2.4632 -4.4112 20 6 0.9006 -4.4430 -1.0538 21 6 -0.5549 -4.4562 -1.5252 22 6 1.7421 -5.3322 -1.9715 23 1 -0.3633 -0.0004 -1.0276 24 1 -0.3633 0.8901 0.5136 25 1 -0.3633 -0.8898 0.5142 26 1 2.0451 2.1457 -0.0008 27 1 0.4917 -2.6288 -2.9264 28 1 1.2572 -1.2437 -2.1117 29 1 1.9649 -0.6791 -5.6814 30 1 0.9552 -4.8201 -0.0325 31 1 -0.6095 -4.0791 -2.5464 32 1 -0.9377 -5.4763 -1.4940 33 1 -1.1543 -3.8228 -0.8714 34 1 2.7789 -5.3227 -1.6355 35 1 1.3594 -6.3523 -1.9396 36 1 1.6874 -4.9551 -2.9927 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309195317.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:22:43 Heat of formation + Delta-G solvation = 26.817237 kcal Electronic energy + Delta-G solvation = -19422.505871 eV Core-core repulsion = 16522.106923 eV Total energy + Delta-G solvation = -2900.398948 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.94444 -39.05700 -35.87991 -33.10916 -32.64727 -31.56795 -30.17284 -27.36599 -26.80415 -26.69474 -23.17317 -22.91976 -21.29977 -19.89311 -18.55450 -17.30721 -16.56889 -16.27187 -15.37254 -14.76785 -14.51852 -14.23727 -13.69513 -13.38129 -12.94892 -12.77746 -12.60208 -12.37659 -12.35418 -11.84551 -11.77722 -11.55104 -11.43692 -11.05306 -10.87688 -10.73464 -10.41046 -10.17435 -10.01118 -9.68775 -9.45126 -8.80835 -8.58332 -8.14887 -7.82960 -6.19840 -4.25526 2.24967 2.83762 3.16370 3.19421 3.27512 3.29468 3.62080 3.95471 4.31119 5.10395 5.14744 5.20113 5.45015 5.54630 5.62063 5.76729 5.85019 6.05109 6.06539 6.09871 6.11495 6.30263 6.36619 6.37921 6.49660 6.64769 6.75001 6.96019 7.03527 7.24070 7.46175 7.52473 7.73018 8.04402 8.17030 8.55018 8.67863 8.84234 9.40493 10.87381 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.015012 B = 0.011234 C = 0.008072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.690106 B = 2491.922960 C = 3467.820005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.169 4.169 3 C 0.006 3.994 4 N -0.290 5.290 5 N -0.365 5.365 6 H 0.443 0.557 7 C 0.013 3.987 8 C 0.586 3.414 9 O -0.565 6.565 10 N -0.570 5.570 11 C 0.231 3.769 12 C -0.534 4.534 13 H 0.059 0.941 14 C 0.067 3.933 15 N -0.887 5.887 16 Si 0.892 3.108 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.275 1.275 20 C 0.136 3.864 21 C -0.159 4.159 22 C -0.155 4.155 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.179 0.821 27 H 0.041 0.959 28 H 0.049 0.951 29 H 0.265 0.735 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.194 -0.973 5.680 6.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.179 4.179 3 C -0.172 4.172 4 N -0.121 5.121 5 N -0.077 5.077 6 H 0.287 0.713 7 C -0.118 4.118 8 C 0.371 3.629 9 O -0.445 6.445 10 N -0.300 5.300 11 C 0.111 3.889 12 C -0.572 4.572 13 H 0.077 0.923 14 C -0.136 4.136 15 N -0.525 5.525 16 Si 0.720 3.280 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.200 1.200 20 C 0.033 3.967 21 C -0.217 4.217 22 C -0.213 4.213 23 H 0.091 0.909 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.196 0.804 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.080 -0.833 6.001 6.405 hybrid contribution 0.568 -0.545 -0.928 1.217 sum -1.512 -1.378 5.072 5.469 Atomic orbital electron populations 1.20077 0.88949 1.01716 1.02390 1.20497 0.96627 0.90853 1.09967 1.23265 0.88010 0.99605 1.06333 1.73045 1.24352 0.93426 1.21263 1.43247 1.07113 1.04137 1.53241 0.71302 1.21166 0.86272 0.94728 1.09630 1.17090 0.78219 0.84251 0.83386 1.90735 1.57211 1.62749 1.33822 1.48274 1.56638 1.13913 1.11186 1.19582 0.97953 0.92055 0.79288 1.21415 1.03309 1.28740 1.03785 0.92320 1.24892 0.96568 0.94772 0.97370 1.69907 1.33206 1.29550 1.19842 0.86584 0.83452 0.77793 0.80155 1.20501 1.21071 1.19999 1.20932 0.93082 0.82231 1.00477 1.22134 0.95494 1.01451 1.02646 1.22117 0.99523 0.97703 1.01947 0.90886 0.91700 0.92400 0.80392 0.94156 0.93342 0.92571 0.89564 0.91267 0.92105 0.92812 0.92987 0.93075 0.90207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.13 10.03 36.01 0.36 -0.77 16 2 C -0.17 -3.10 5.24 -104.03 -0.54 -3.65 16 3 C 0.01 0.11 12.00 -17.43 -0.21 -0.10 16 4 N -0.29 -5.45 12.14 30.59 0.37 -5.08 16 5 N -0.37 -6.94 6.93 33.48 0.23 -6.70 16 6 H 0.44 7.44 8.96 -190.45 -1.71 5.73 16 7 C 0.01 0.26 5.62 -82.06 -0.46 -0.20 16 8 C 0.59 12.37 7.36 -12.64 -0.09 12.28 16 9 O -0.57 -12.82 16.46 5.25 0.09 -12.73 16 10 N -0.57 -11.67 2.39 -168.83 -0.40 -12.08 16 11 C 0.23 5.30 4.60 -5.20 -0.02 5.28 16 12 C -0.53 -13.49 7.85 -34.44 -0.27 -13.76 16 13 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 14 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 15 N -0.89 -24.22 13.29 55.43 0.74 -23.49 16 16 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 C 0.14 2.43 3.23 -67.93 -0.22 2.21 16 21 C -0.16 -2.44 9.08 37.16 0.34 -2.10 16 22 C -0.15 -2.68 8.60 37.16 0.32 -2.36 16 23 H 0.07 1.16 7.89 -51.93 -0.41 0.75 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.89 8.07 -51.93 -0.42 0.47 16 26 H 0.18 2.44 8.06 -52.49 -0.42 2.02 16 27 H 0.04 0.96 6.19 -51.93 -0.32 0.64 16 28 H 0.05 1.19 5.44 -51.93 -0.28 0.91 16 29 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.09 1.56 6.94 -51.93 -0.36 1.20 16 31 H 0.07 1.15 6.53 -51.93 -0.34 0.81 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.08 1.54 6.92 -51.93 -0.36 1.18 16 LS Contribution 302.77 15.07 4.56 4.56 Total: -1.00 -29.61 302.77 -6.61 -36.21 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -6.27 Total: 5.22 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -0.90 Total: -1.51 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: 0.94 Total: -47.35 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.09 Total: -12.73 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.61 -6.61 -36.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309195317.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.032 kcal (2) G-P(sol) polarization free energy of solvation -29.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds