Wall clock time and date at job start Sun Mar 29 2020 23:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39677 * 127.31794 * 2 1 4 4 N 1.30860 * 107.85925 * 179.97438 * 3 2 1 5 5 N 1.28444 * 110.92980 * 359.97438 * 4 3 2 6 6 H 0.97006 * 125.19236 * 179.97438 * 5 4 3 7 7 C 1.36601 * 109.61786 * 359.76874 * 5 4 3 8 8 C 1.47160 * 126.88555 * 180.24496 * 7 5 4 9 9 O 1.21630 * 120.00315 * 180.15554 * 8 7 5 10 10 N 1.34779 * 119.99865 * 0.14642 * 8 7 5 11 11 C 1.46508 * 119.99934 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47002 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47050 * 299.99769 * 12 11 10 14 14 C 1.52996 * 109.47086 * 59.99833 * 12 11 10 15 15 C 1.50697 * 109.46896 * 179.97438 * 12 11 10 16 16 H 1.08001 * 120.00143 * 0.02562 * 15 12 11 17 17 C 1.37884 * 119.99950 * 179.97438 * 15 12 11 18 18 N 1.31516 * 119.99914 * 0.02562 * 17 15 12 19 19 Si 1.86795 * 119.99954 * 180.02562 * 17 15 12 20 20 H 1.48501 * 109.47274 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47283 * 119.99820 * 19 17 15 22 22 H 1.48494 * 109.47016 * 240.00098 * 19 17 15 23 23 H 1.09002 * 109.47152 * 90.02718 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.02818 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.02799 * 1 2 3 26 26 H 1.07995 * 126.06778 * 359.93637 * 3 2 1 27 27 H 0.97000 * 120.00046 * 0.02562 * 10 8 7 28 28 H 1.09003 * 109.46645 * 299.99996 * 11 10 8 29 29 H 1.09002 * 109.47112 * 59.99844 * 11 10 8 30 30 H 1.09003 * 109.47307 * 60.00218 * 13 12 11 31 31 H 1.09001 * 109.46623 * 180.02562 * 13 12 11 32 32 H 1.09002 * 109.47163 * 299.99816 * 13 12 11 33 33 H 1.09001 * 109.47436 * 60.00235 * 14 12 11 34 34 H 1.09001 * 109.47272 * 179.97438 * 14 12 11 35 35 H 1.09004 * 109.47686 * 299.99837 * 14 12 11 36 36 H 0.96996 * 119.99753 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3538 1.1108 0.0000 4 7 3.5877 0.6749 0.0006 5 7 3.6206 -0.6091 0.0015 6 1 4.4275 -1.1476 0.0016 7 6 2.3461 -1.1006 0.0067 8 6 1.9455 -2.5166 0.0144 9 8 0.7664 -2.8152 0.0157 10 7 2.8853 -3.4828 0.0199 11 6 2.4865 -4.8925 0.0270 12 6 3.7357 -5.7759 0.0328 13 6 4.5696 -5.4881 -1.2173 14 6 4.5674 -5.4748 1.2812 15 6 3.3255 -7.2259 0.0407 16 1 2.2785 -7.4909 0.0411 17 6 4.2868 -8.2143 0.0464 18 7 5.5618 -7.8916 0.0454 19 14 3.7783 -10.0117 0.0555 20 1 2.2964 -10.1069 0.0546 21 1 4.3178 -10.6849 -1.1532 22 1 4.3165 -10.6722 1.2718 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3633 0.8903 0.5134 25 1 -0.3633 -0.8898 0.5143 26 1 2.0450 2.1457 -0.0010 27 1 3.8256 -3.2447 0.0191 28 1 1.8927 -5.0976 0.9178 29 1 1.8936 -5.1069 -0.8622 30 1 4.8664 -4.4392 -1.2226 31 1 5.4594 -6.1177 -1.2133 32 1 3.9771 -5.7026 -2.1067 33 1 3.9733 -5.6798 2.1718 34 1 5.4571 -6.1044 1.2856 35 1 4.8641 -4.4259 1.2759 36 1 6.2380 -8.5869 0.0498 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316136734.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:22:40 Heat of formation + Delta-G solvation = 3.828693 kcal Electronic energy + Delta-G solvation = -18497.450165 eV Core-core repulsion = 15596.054359 eV Total energy + Delta-G solvation = -2901.395806 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.54764 -40.56943 -38.17465 -35.23292 -33.92764 -33.03609 -31.92254 -28.52100 -27.60475 -27.47294 -26.74334 -23.99206 -22.57357 -21.07368 -20.59540 -19.83512 -17.88249 -17.08258 -16.94771 -16.73742 -16.46031 -15.87185 -15.40125 -14.83082 -14.49428 -14.40712 -14.12480 -14.01200 -13.77296 -13.24603 -13.22945 -13.12690 -12.72597 -12.58552 -12.29387 -12.15246 -11.67717 -11.52764 -11.36604 -11.08259 -10.72681 -10.46884 -10.41068 -10.13347 -9.75775 -8.04263 -6.19652 0.17680 1.41125 1.45957 1.54698 1.60827 1.81351 2.11171 2.14136 2.46702 3.20138 3.66328 3.72745 4.10606 4.31090 4.38814 4.47685 4.63266 4.67519 4.91431 4.94711 4.99894 5.03566 5.11883 5.15452 5.22679 5.30986 5.48813 5.60877 5.63447 5.66339 5.94042 6.11902 6.17582 6.40519 6.46600 6.84227 6.94063 7.07669 7.48461 8.94908 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.044123 B = 0.004811 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.440297 B = 5819.033976 C = 6257.108055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.132 4.132 3 C 0.003 3.997 4 N -0.279 5.279 5 N -0.372 5.372 6 H 0.453 0.547 7 C -0.058 4.058 8 C 0.582 3.418 9 O -0.560 6.560 10 N -0.706 5.706 11 C 0.148 3.852 12 C 0.050 3.950 13 C -0.123 4.123 14 C -0.122 4.122 15 C -0.527 4.527 16 H 0.047 0.953 17 C 0.029 3.971 18 N -0.899 5.899 19 Si 0.945 3.055 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.074 0.926 24 H 0.095 0.905 25 H 0.057 0.943 26 H 0.222 0.778 27 H 0.404 0.596 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.035 0.965 31 H 0.063 0.937 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.063 0.937 35 H 0.035 0.965 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.940 15.120 -0.071 15.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.143 4.143 3 C -0.175 4.175 4 N -0.112 5.112 5 N -0.090 5.090 6 H 0.300 0.700 7 C -0.186 4.186 8 C 0.368 3.632 9 O -0.438 6.438 10 N -0.357 5.357 11 C 0.025 3.975 12 C 0.050 3.950 13 C -0.180 4.180 14 C -0.180 4.180 15 C -0.565 4.565 16 H 0.065 0.935 17 C -0.171 4.171 18 N -0.538 5.538 19 Si 0.772 3.228 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.208 1.208 23 H 0.092 0.908 24 H 0.114 0.886 25 H 0.076 0.924 26 H 0.239 0.761 27 H 0.240 0.760 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.039 0.961 33 H 0.039 0.961 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.505 15.121 -0.071 15.327 hybrid contribution -0.024 -1.877 -0.005 1.878 sum -2.529 13.243 -0.076 13.483 Atomic orbital electron populations 1.20261 0.87172 1.03449 1.02874 1.21181 0.98212 0.90708 1.04211 1.24101 0.86838 1.01312 1.05219 1.73139 1.25270 0.93500 1.19281 1.43595 1.07353 1.04556 1.53510 0.70007 1.21501 0.86952 0.94081 1.16044 1.17291 0.85642 0.83585 0.76681 1.90769 1.18202 1.82887 1.51960 1.46019 1.09475 1.06725 1.73442 1.21384 0.98282 0.78153 0.99700 1.18378 0.90507 0.92696 0.93462 1.21695 1.01247 0.98213 0.96880 1.21694 1.01245 0.98184 0.96904 1.21284 0.92619 0.91487 1.51140 0.93505 1.25439 0.95048 1.01942 0.94678 1.69905 0.99893 1.33264 1.50735 0.85709 0.78289 0.81374 0.77448 1.19905 1.20840 1.20828 0.90762 0.88641 0.92366 0.76114 0.75981 0.93572 0.93563 0.94577 0.91806 0.96105 0.96106 0.91811 0.94587 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.72 9.93 71.24 0.71 -1.01 16 2 C -0.13 -3.21 6.29 -19.48 -0.12 -3.33 16 3 C 0.00 0.05 12.00 85.19 1.02 1.08 16 4 N -0.28 -6.41 12.14 -57.14 -0.69 -7.11 16 5 N -0.37 -8.52 6.85 -48.00 -0.33 -8.85 16 6 H 0.45 8.13 8.22 -220.00 -1.81 6.32 16 7 C -0.06 -1.60 7.16 40.78 0.29 -1.30 16 8 C 0.58 19.60 7.80 86.59 0.68 20.28 16 9 O -0.56 -22.40 15.05 -4.13 -0.06 -22.46 16 10 N -0.71 -23.29 4.96 -466.61 -2.31 -25.60 16 11 C 0.15 6.01 4.50 86.38 0.39 6.40 16 12 C 0.05 2.23 0.50 -52.93 -0.03 2.20 16 13 C -0.12 -5.23 8.08 71.98 0.58 -4.65 16 14 C -0.12 -5.23 8.08 71.98 0.58 -4.64 16 15 C -0.53 -27.07 8.01 25.60 0.21 -26.86 16 16 H 0.05 2.46 7.74 -2.91 -0.02 2.44 16 17 C 0.03 1.48 5.15 84.66 0.44 1.92 16 18 N -0.90 -46.90 9.35 21.45 0.20 -46.69 16 19 Si 0.94 41.84 29.54 68.60 2.03 43.86 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.06 1.56 6.66 -2.38 -0.02 1.55 16 26 H 0.22 2.60 8.06 -2.91 -0.02 2.57 16 27 H 0.40 11.32 5.35 -92.71 -0.50 10.83 16 28 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.04 1.26 6.86 -2.39 -0.02 1.24 16 31 H 0.06 3.06 6.07 -2.39 -0.01 3.04 16 32 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.06 3.06 6.07 -2.39 -0.01 3.04 16 35 H 0.04 1.25 6.86 -2.38 -0.02 1.24 16 36 H 0.26 13.07 8.31 -92.71 -0.77 12.30 16 Total: -1.00 -60.76 295.76 2.38 -58.39 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -1.19 Total: 18.40 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 4.74 Total: -9.93 kcal Atomic # 7 Polarization: -85.13 SS G_CDS: -3.13 Total: -88.26 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.06 Total: -22.46 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Total: -60.76 2.38 -58.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316136734.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.215 kcal (2) G-P(sol) polarization free energy of solvation -60.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds