Wall clock time and date at job start Sun Mar 29 2020 23:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39873 * 125.89595 * 2 1 4 4 C 1.35318 * 107.91457 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.12233 * 180.02562 * 4 3 2 6 6 N 1.34942 * 107.75021 * 359.97438 * 4 3 2 7 7 C 1.46502 * 126.03662 * 179.97438 * 6 4 3 8 8 H 1.08993 * 109.47062 * 0.02562 * 7 6 4 9 9 C 1.53003 * 109.46760 * 120.00723 * 7 6 4 10 10 C 1.52998 * 109.47079 * 240.00155 * 7 6 4 11 11 C 1.50699 * 109.46969 * 175.00117 * 10 7 6 12 12 O 1.21294 * 120.00107 * 0.02562 * 11 10 7 13 13 N 1.34782 * 120.00219 * 180.02562 * 11 10 7 14 14 C 1.37098 * 119.99934 * 180.02562 * 13 11 10 15 15 H 1.07994 * 120.00250 * 359.97438 * 14 13 11 16 16 C 1.38952 * 119.99534 * 180.02562 * 14 13 11 17 17 N 1.31405 * 120.00247 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99622 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47480 * 59.99699 * 18 16 14 20 20 H 1.48506 * 109.46738 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46946 * 299.99208 * 18 16 14 22 22 N 1.30830 * 125.89753 * 179.68720 * 2 1 3 23 23 H 1.09001 * 109.46953 * 90.00178 * 1 2 3 24 24 H 1.09000 * 109.47318 * 209.99776 * 1 2 3 25 25 H 1.09000 * 109.47161 * 330.00407 * 1 2 3 26 26 H 1.07994 * 126.04093 * 359.97251 * 3 2 1 27 27 H 1.08993 * 109.47541 * 89.97273 * 5 4 3 28 28 H 1.09004 * 109.47268 * 209.97579 * 5 4 3 29 29 H 1.09004 * 109.47636 * 329.97065 * 5 4 3 30 30 H 1.09003 * 109.46673 * 299.99982 * 9 7 6 31 31 H 1.09001 * 109.47511 * 59.99697 * 9 7 6 32 32 H 1.09003 * 109.47175 * 180.02562 * 9 7 6 33 33 H 1.09001 * 109.47465 * 294.99770 * 10 7 6 34 34 H 1.08998 * 109.46926 * 55.00777 * 10 7 6 35 35 H 0.97002 * 119.99575 * 359.97438 * 13 11 10 36 36 H 0.96998 * 120.00438 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3272 1.1331 0.0000 4 6 3.6142 0.7153 0.0006 5 6 4.8350 1.5989 0.0013 6 7 3.6088 -0.6341 0.0015 7 6 4.7900 -1.5007 0.0018 8 1 5.6908 -0.8871 0.0017 9 6 4.7746 -2.3832 1.2516 10 6 4.7742 -2.3847 -1.2468 11 6 6.0481 -3.1875 -1.3100 12 8 6.8858 -3.0650 -0.4414 13 7 6.2564 -4.0417 -2.3316 14 6 7.4151 -4.7723 -2.3887 15 1 8.1610 -4.6632 -1.6154 16 6 7.6300 -5.6525 -3.4422 17 7 6.7226 -5.7849 -4.3834 18 14 9.2091 -6.6476 -3.5204 19 1 9.3158 -7.5026 -2.3111 20 1 9.1940 -7.5052 -4.7327 21 1 10.3722 -5.7263 -3.5797 22 7 2.2742 -1.0598 0.0058 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.9923 2.1598 -0.0004 27 1 5.1286 1.8122 1.0291 28 1 5.6516 1.0909 -0.5118 29 1 4.6080 2.5328 -0.5129 30 1 4.7858 -1.7533 2.1412 31 1 3.8737 -2.9968 1.2522 32 1 5.6537 -3.0277 1.2522 33 1 3.9205 -3.0610 -1.2026 34 1 4.6956 -1.7577 -2.1349 35 1 5.5863 -4.1399 -3.0259 36 1 6.8725 -6.3995 -5.1186 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330464363.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:46 Heat of formation + Delta-G solvation = 20.282840 kcal Electronic energy + Delta-G solvation = -18188.952357 eV Core-core repulsion = 15288.270056 eV Total energy + Delta-G solvation = -2900.682301 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.16031 -38.49374 -35.24192 -33.91591 -32.59689 -31.33506 -30.76137 -27.94574 -27.35343 -26.83539 -24.69646 -21.97347 -20.32727 -19.33785 -18.59198 -17.85157 -16.68238 -15.45604 -15.15942 -14.89730 -14.49876 -14.01051 -13.85040 -13.64165 -13.33243 -13.06696 -13.01946 -12.77773 -12.43050 -12.21946 -11.98964 -11.81607 -11.57264 -11.39790 -11.09168 -10.91637 -10.81097 -10.48401 -10.27391 -10.20948 -9.55510 -8.87794 -8.50162 -8.28640 -8.04455 -6.47802 -3.89507 2.06150 2.67770 2.91535 3.15661 3.22610 3.26640 3.80484 4.12159 4.56687 4.71083 4.98945 5.04652 5.14243 5.22918 5.28574 5.37206 5.44827 5.50602 5.62201 5.70247 5.78863 5.87015 5.90054 6.02188 6.08934 6.11055 6.25749 6.32369 6.42902 6.63450 6.91223 7.29358 7.49030 7.96447 7.98950 8.51338 9.09219 9.45554 9.95083 10.69388 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.037019 B = 0.004448 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.185450 B = 6293.958915 C = 6577.919744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.060 3.940 3 C -0.282 4.282 4 C 0.084 3.916 5 C -0.095 4.095 6 N -0.356 5.356 7 C 0.179 3.821 8 H 0.108 0.892 9 C -0.159 4.159 10 C -0.137 4.137 11 C 0.443 3.557 12 O -0.597 6.597 13 N -0.555 5.555 14 C -0.305 4.305 15 H 0.104 0.896 16 C 0.025 3.975 17 N -0.898 5.898 18 Si 0.932 3.068 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.273 1.273 22 N -0.290 5.290 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.141 0.859 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.394 0.606 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.345 12.121 6.002 15.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.106 4.106 3 C -0.311 4.311 4 C -0.044 4.044 5 C -0.153 4.153 6 N -0.139 5.139 7 C 0.078 3.922 8 H 0.126 0.874 9 C -0.216 4.216 10 C -0.179 4.179 11 C 0.228 3.772 12 O -0.484 6.484 13 N -0.189 5.189 14 C -0.434 4.434 15 H 0.122 0.878 16 C -0.178 4.178 17 N -0.538 5.538 18 Si 0.759 3.241 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.198 1.198 22 N -0.113 5.113 23 H 0.091 0.909 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.158 0.842 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.121 0.879 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.227 0.773 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.616 10.687 6.391 14.596 hybrid contribution 0.292 0.305 -0.671 0.793 sum -7.324 10.993 5.720 14.394 Atomic orbital electron populations 1.20107 0.87157 1.02810 1.02616 1.22252 0.96726 0.90980 1.00612 1.21012 0.90986 0.99425 1.19722 1.21120 0.97218 0.84977 1.01117 1.20473 0.93435 0.98134 1.03272 1.48993 1.05399 1.03936 1.55523 1.21044 0.82931 0.91480 0.96714 0.87426 1.22206 1.04643 1.00027 0.94767 1.21764 0.99329 0.99207 0.97579 1.19555 0.88443 0.84503 0.84684 1.90481 1.47289 1.70297 1.40302 1.41875 1.19324 1.35725 1.21984 1.19689 0.96477 1.18293 1.08949 0.87774 1.25303 0.99186 0.97943 0.95328 1.69605 1.34668 1.37455 1.12110 0.85899 0.81190 0.79346 0.77679 1.19802 1.20898 1.19821 1.77277 0.86593 1.22697 1.24744 0.90864 0.91202 0.90879 0.84153 0.90303 0.90776 0.89842 0.93237 0.92146 0.87905 0.89200 0.90277 0.77261 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.45 36.01 0.38 -0.32 16 2 C 0.06 0.86 7.22 -82.40 -0.59 0.27 16 3 C -0.28 -3.76 10.65 -40.01 -0.43 -4.18 16 4 C 0.08 1.18 6.93 -82.27 -0.57 0.61 16 5 C -0.09 -0.99 9.95 36.00 0.36 -0.63 16 6 N -0.36 -5.79 3.28 -50.70 -0.17 -5.96 16 7 C 0.18 3.05 2.76 -67.93 -0.19 2.86 16 8 H 0.11 1.79 6.48 -51.93 -0.34 1.45 16 9 C -0.16 -2.71 9.19 37.16 0.34 -2.36 16 10 C -0.14 -2.57 5.44 -27.88 -0.15 -2.72 16 11 C 0.44 10.24 7.50 -10.98 -0.08 10.15 16 12 O -0.60 -15.15 13.54 5.55 0.08 -15.07 16 13 N -0.55 -14.03 5.29 -10.96 -0.06 -14.09 16 14 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 15 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 16 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 17 N -0.90 -24.38 13.05 55.50 0.72 -23.66 16 18 Si 0.93 20.79 29.55 -169.99 -5.02 15.76 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 22 N -0.29 -4.93 12.43 33.67 0.42 -4.51 16 23 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.14 1.49 8.06 -52.49 -0.42 1.06 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.81 7.09 -51.93 -0.37 0.44 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.10 1.97 5.95 -51.93 -0.31 1.66 16 33 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 34 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 36 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 307.94 15.07 4.64 4.64 Total: -1.00 -30.84 307.94 -5.64 -36.48 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -5.07 Total: 10.70 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -1.18 Total: -4.30 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: 0.92 Total: -48.22 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: 0.08 Total: -15.07 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.84 -5.64 -36.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330464363.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.766 kcal (2) G-P(sol) polarization free energy of solvation -30.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds