Wall clock time and date at job start Sun Mar 29 2020 23:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39873 * 125.89595 * 2 1 4 4 C 1.35318 * 107.91457 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.12233 * 180.02562 * 4 3 2 6 6 N 1.34942 * 107.75021 * 359.97438 * 4 3 2 7 7 C 1.46502 * 126.03662 * 179.97438 * 6 4 3 8 8 H 1.08993 * 109.47062 * 0.02562 * 7 6 4 9 9 C 1.53003 * 109.46760 * 120.00723 * 7 6 4 10 10 C 1.52998 * 109.47079 * 240.00155 * 7 6 4 11 11 C 1.50699 * 109.46969 * 175.00117 * 10 7 6 12 12 O 1.21294 * 120.00107 * 0.02562 * 11 10 7 13 13 N 1.34782 * 120.00219 * 180.02562 * 11 10 7 14 14 C 1.37098 * 119.99934 * 180.02562 * 13 11 10 15 15 H 1.07994 * 120.00250 * 359.97438 * 14 13 11 16 16 C 1.38952 * 119.99534 * 180.02562 * 14 13 11 17 17 N 1.31405 * 120.00247 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99622 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47480 * 59.99699 * 18 16 14 20 20 H 1.48506 * 109.46738 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46946 * 299.99208 * 18 16 14 22 22 N 1.30830 * 125.89753 * 179.68720 * 2 1 3 23 23 H 1.09001 * 109.46953 * 90.00178 * 1 2 3 24 24 H 1.09000 * 109.47318 * 209.99776 * 1 2 3 25 25 H 1.09000 * 109.47161 * 330.00407 * 1 2 3 26 26 H 1.07994 * 126.04093 * 359.97251 * 3 2 1 27 27 H 1.08993 * 109.47541 * 89.97273 * 5 4 3 28 28 H 1.09004 * 109.47268 * 209.97579 * 5 4 3 29 29 H 1.09004 * 109.47636 * 329.97065 * 5 4 3 30 30 H 1.09003 * 109.46673 * 299.99982 * 9 7 6 31 31 H 1.09001 * 109.47511 * 59.99697 * 9 7 6 32 32 H 1.09003 * 109.47175 * 180.02562 * 9 7 6 33 33 H 1.09001 * 109.47465 * 294.99770 * 10 7 6 34 34 H 1.08998 * 109.46926 * 55.00777 * 10 7 6 35 35 H 0.97002 * 119.99575 * 359.97438 * 13 11 10 36 36 H 0.96998 * 120.00438 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3272 1.1331 0.0000 4 6 3.6142 0.7153 0.0006 5 6 4.8350 1.5989 0.0013 6 7 3.6088 -0.6341 0.0015 7 6 4.7900 -1.5007 0.0018 8 1 5.6908 -0.8871 0.0017 9 6 4.7746 -2.3832 1.2516 10 6 4.7742 -2.3847 -1.2468 11 6 6.0481 -3.1875 -1.3100 12 8 6.8858 -3.0650 -0.4414 13 7 6.2564 -4.0417 -2.3316 14 6 7.4151 -4.7723 -2.3887 15 1 8.1610 -4.6632 -1.6154 16 6 7.6300 -5.6525 -3.4422 17 7 6.7226 -5.7849 -4.3834 18 14 9.2091 -6.6476 -3.5204 19 1 9.3158 -7.5026 -2.3111 20 1 9.1940 -7.5052 -4.7327 21 1 10.3722 -5.7263 -3.5797 22 7 2.2742 -1.0598 0.0058 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.9923 2.1598 -0.0004 27 1 5.1286 1.8122 1.0291 28 1 5.6516 1.0909 -0.5118 29 1 4.6080 2.5328 -0.5129 30 1 4.7858 -1.7533 2.1412 31 1 3.8737 -2.9968 1.2522 32 1 5.6537 -3.0277 1.2522 33 1 3.9205 -3.0610 -1.2026 34 1 4.6956 -1.7577 -2.1349 35 1 5.5863 -4.1399 -3.0259 36 1 6.8725 -6.3995 -5.1186 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330464363.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:45 Heat of formation + Delta-G solvation = 0.589226 kcal Electronic energy + Delta-G solvation = -18189.806337 eV Core-core repulsion = 15288.270056 eV Total energy + Delta-G solvation = -2901.536280 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.26984 -40.34591 -36.74107 -35.76390 -33.66721 -33.33742 -31.83307 -29.44908 -28.47604 -27.81740 -26.63541 -23.33423 -21.43958 -21.05477 -20.04498 -19.60387 -18.16011 -17.02149 -16.62240 -16.39989 -16.18368 -15.77488 -15.23834 -14.72862 -14.41983 -14.25847 -14.14074 -14.02176 -13.70175 -13.49971 -13.23388 -13.13971 -12.98907 -12.84153 -12.61784 -12.46470 -12.30689 -12.17542 -12.11284 -11.51140 -11.32667 -10.42689 -10.06938 -9.99370 -9.38473 -8.50206 -6.00233 0.96804 1.37931 1.40807 1.49055 1.53810 1.89743 1.94886 2.28106 3.09023 3.16228 3.53082 3.73770 3.79149 3.96281 4.08043 4.21540 4.37845 4.53284 4.55953 4.58435 4.70520 4.75235 4.77898 4.86742 4.88937 5.00250 5.06463 5.14026 5.20909 5.38104 5.41438 5.87764 5.93912 6.17495 6.50816 6.88817 7.05416 7.47124 7.99480 8.66944 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.037019 B = 0.004448 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.185450 B = 6293.958915 C = 6577.919744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.056 3.944 3 C -0.285 4.285 4 C 0.075 3.925 5 C -0.094 4.094 6 N -0.372 5.372 7 C 0.187 3.813 8 H 0.111 0.889 9 C -0.149 4.149 10 C -0.122 4.122 11 C 0.447 3.553 12 O -0.618 6.618 13 N -0.568 5.568 14 C -0.337 4.337 15 H 0.087 0.913 16 C -0.013 4.013 17 N -0.921 5.921 18 Si 0.996 3.004 19 H -0.270 1.270 20 H -0.272 1.272 21 H -0.269 1.269 22 N -0.335 5.335 23 H 0.084 0.916 24 H 0.067 0.933 25 H 0.099 0.901 26 H 0.170 0.830 27 H 0.093 0.907 28 H 0.066 0.934 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.395 0.605 36 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.827 13.511 6.054 17.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.110 4.110 3 C -0.314 4.314 4 C -0.052 4.052 5 C -0.152 4.152 6 N -0.155 5.155 7 C 0.085 3.915 8 H 0.129 0.871 9 C -0.207 4.207 10 C -0.163 4.163 11 C 0.234 3.766 12 O -0.506 6.506 13 N -0.203 5.203 14 C -0.466 4.466 15 H 0.105 0.895 16 C -0.213 4.213 17 N -0.561 5.561 18 Si 0.819 3.181 19 H -0.195 1.195 20 H -0.197 1.197 21 H -0.194 1.194 22 N -0.158 5.158 23 H 0.102 0.898 24 H 0.086 0.914 25 H 0.117 0.883 26 H 0.188 0.812 27 H 0.111 0.889 28 H 0.085 0.915 29 H 0.126 0.874 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.228 0.772 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.120 12.099 6.446 15.934 hybrid contribution 0.350 -0.029 -0.643 0.733 sum -7.770 12.070 5.803 15.484 Atomic orbital electron populations 1.20258 0.84601 1.04010 1.03666 1.22988 0.98440 0.90801 0.98800 1.21424 0.90500 1.00545 1.18883 1.21795 0.98929 0.84341 1.00139 1.20607 0.91765 0.98354 1.04456 1.48847 1.04876 1.04608 1.57177 1.20807 0.83904 0.91425 0.95379 0.87096 1.22055 1.03015 0.99861 0.95758 1.21617 0.96445 0.98969 0.99259 1.20262 0.89347 0.83632 0.83370 1.90465 1.48582 1.70732 1.40859 1.41961 1.19085 1.36507 1.22770 1.19726 0.97308 1.20083 1.09486 0.89530 1.26122 1.02257 0.98353 0.94520 1.69679 1.36104 1.37902 1.12448 0.84944 0.77283 0.77879 0.77983 1.19540 1.19659 1.19361 1.77245 0.87143 1.24448 1.26987 0.89767 0.91414 0.88281 0.81240 0.88874 0.91532 0.87369 0.91728 0.92778 0.90310 0.89186 0.89190 0.77169 0.91196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.21 10.45 71.24 0.74 -0.46 16 2 C 0.06 1.49 7.22 43.11 0.31 1.80 16 3 C -0.28 -6.83 10.65 21.99 0.23 -6.59 16 4 C 0.08 1.96 6.93 41.41 0.29 2.25 16 5 C -0.09 -1.74 9.95 71.24 0.71 -1.03 16 6 N -0.37 -11.77 3.28 -314.31 -1.03 -12.80 16 7 C 0.19 6.31 2.76 44.99 0.12 6.44 16 8 H 0.11 3.65 6.48 -2.39 -0.02 3.63 16 9 C -0.15 -5.12 9.19 71.98 0.66 -4.46 16 10 C -0.12 -4.57 5.44 29.85 0.16 -4.41 16 11 C 0.45 21.07 7.50 87.66 0.66 21.73 16 12 O -0.62 -32.09 13.54 -3.07 -0.04 -32.13 16 13 N -0.57 -29.41 5.29 -306.98 -1.62 -31.03 16 14 C -0.34 -18.92 9.68 84.04 0.81 -18.11 16 15 H 0.09 5.08 7.16 -2.91 -0.02 5.05 16 16 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 17 N -0.92 -50.10 13.05 21.66 0.28 -49.81 16 18 Si 1.00 42.44 29.55 68.60 2.03 44.47 16 19 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 20 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 21 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 22 N -0.34 -11.13 12.43 -47.38 -0.59 -11.72 16 23 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.17 2.94 8.06 -2.91 -0.02 2.91 16 27 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.07 1.34 7.09 -2.38 -0.02 1.32 16 29 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.08 3.09 5.95 -2.39 -0.01 3.07 16 33 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 34 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 35 H 0.39 19.93 7.90 -92.71 -0.73 19.19 16 36 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -66.37 307.94 4.55 -61.82 By element: Atomic # 1 Polarization: 33.90 SS G_CDS: 0.35 Total: 34.25 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: 5.17 Total: -3.05 kcal Atomic # 7 Polarization: -102.41 SS G_CDS: -2.96 Total: -105.36 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -0.04 Total: -32.13 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -66.37 4.55 -61.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330464363.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.412 kcal (2) G-P(sol) polarization free energy of solvation -66.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds