Wall clock time and date at job start Sun Mar 29 2020 23:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39874 * 126.03736 * 2 1 4 4 N 1.30837 * 108.19824 * 179.97438 * 3 2 1 5 5 N 1.40084 * 108.20590 * 0.02562 * 4 3 2 6 6 C 1.46502 * 126.03309 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.47370 * 305.01845 * 6 5 4 8 8 O 1.21281 * 119.99661 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00362 * 180.02562 * 7 6 5 10 10 C 1.46493 * 120.00021 * 0.02562 * 9 7 6 11 11 C 1.46502 * 120.00128 * 179.97438 * 9 7 6 12 12 H 1.09009 * 109.47102 * 0.02562 * 11 9 7 13 13 C 1.52997 * 109.47035 * 119.99901 * 11 9 7 14 14 C 1.50703 * 109.47276 * 240.00386 * 11 9 7 15 15 H 1.08002 * 120.00104 * 359.97438 * 14 11 9 16 16 C 1.37876 * 119.99865 * 180.02562 * 14 11 9 17 17 N 1.31514 * 120.00147 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 119.99828 * 179.97438 * 16 14 11 19 19 H 1.48504 * 109.47081 * 59.99555 * 18 16 14 20 20 H 1.48496 * 109.47209 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46896 * 300.00057 * 18 16 14 22 22 C 1.34938 * 107.92933 * 359.75357 * 5 4 3 23 23 H 1.09002 * 109.47152 * 90.02757 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.02858 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.02839 * 1 2 3 26 26 H 1.07991 * 125.90010 * 359.94828 * 3 2 1 27 27 H 1.09000 * 109.47673 * 65.01768 * 6 5 4 28 28 H 1.09004 * 109.46824 * 185.02002 * 6 5 4 29 29 H 1.09007 * 109.47531 * 89.99456 * 10 9 7 30 30 H 1.09002 * 109.47218 * 209.99724 * 10 9 7 31 31 H 1.09006 * 109.47161 * 329.99811 * 10 9 7 32 32 H 1.09003 * 109.46813 * 60.00495 * 13 11 9 33 33 H 1.09003 * 109.47141 * 180.02562 * 13 11 9 34 34 H 1.08994 * 109.47465 * 300.00472 * 13 11 9 35 35 H 0.96994 * 120.00016 * 180.02562 * 17 16 14 36 36 H 1.08003 * 126.13278 * 180.23755 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1311 0.0000 4 7 3.5754 0.7303 0.0006 5 7 3.5844 -0.6706 0.0003 6 6 4.7746 -1.5248 0.0013 7 6 5.6592 -1.1551 -1.1614 8 8 5.3283 -0.2654 -1.9162 9 7 6.8181 -1.8132 -1.3624 10 6 7.2175 -2.8882 -0.4510 11 6 7.6778 -1.4542 -2.4930 12 1 7.2190 -0.6399 -3.0542 13 6 9.0450 -1.0069 -1.9722 14 6 7.8498 -2.6506 -3.3931 15 1 7.3674 -3.5851 -3.1473 16 6 8.6239 -2.5525 -4.5298 17 7 9.2118 -1.4147 -4.8289 18 14 8.8377 -4.0357 -5.6451 19 1 7.5108 -4.4700 -6.1509 20 1 9.7090 -3.6718 -6.7912 21 1 9.4628 -5.1443 -4.8799 22 6 2.3032 -1.0942 0.0051 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3633 0.8903 0.5134 25 1 -0.3633 -0.8898 0.5143 26 1 1.9951 2.1578 -0.0008 27 1 5.3220 -1.3842 0.9333 28 1 4.4729 -2.5683 -0.0891 29 1 6.8262 -3.8380 -0.8156 30 1 8.3053 -2.9381 -0.4025 31 1 6.8183 -2.6886 0.5435 32 1 9.5040 -1.8208 -1.4109 33 1 9.6845 -0.7394 -2.8134 34 1 8.9206 -0.1416 -1.3212 35 1 9.7560 -1.3456 -5.6287 36 1 1.9724 -2.1223 0.0099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330582143.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:21:08 Heat of formation + Delta-G solvation = 48.849161 kcal Electronic energy + Delta-G solvation = -18407.568680 eV Core-core repulsion = 15508.125107 eV Total energy + Delta-G solvation = -2899.443572 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.03653 -38.98095 -35.41937 -33.54674 -32.80338 -31.43678 -29.77326 -27.95530 -26.22359 -25.41621 -25.18827 -21.92731 -20.52301 -20.13328 -18.37859 -16.94943 -16.71810 -16.00686 -15.28981 -15.23925 -14.48812 -14.24459 -13.81364 -13.35126 -13.12205 -12.94568 -12.65553 -12.58519 -12.45851 -11.96978 -11.82294 -11.57557 -11.55226 -11.08490 -10.85182 -10.73298 -10.29755 -10.28078 -10.19257 -9.50274 -9.20594 -8.87911 -8.45433 -8.12272 -7.66321 -6.09600 -4.18340 2.08485 2.63042 3.01535 3.22622 3.25791 3.31282 3.32847 3.82110 4.36727 4.68791 4.89510 5.00092 5.12591 5.20955 5.21643 5.35231 5.51973 5.60498 5.73490 5.93710 5.95885 6.04852 6.19875 6.25751 6.72765 6.78688 6.85186 7.01604 7.13340 7.38128 7.47477 7.67500 7.94793 7.98091 8.15281 8.43824 8.78471 8.96099 9.48109 10.95698 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.033466 B = 0.004919 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.480557 B = 5690.459875 C = 5852.253760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.247 4.247 3 C 0.036 3.964 4 N -0.260 5.260 5 N -0.355 5.355 6 C 0.114 3.886 7 C 0.490 3.510 8 O -0.522 6.522 9 N -0.592 5.592 10 C 0.083 3.917 11 C 0.260 3.740 12 H 0.063 0.937 13 C -0.147 4.147 14 C -0.528 4.528 15 H 0.058 0.942 16 C 0.065 3.935 17 N -0.887 5.887 18 Si 0.900 3.100 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.276 1.276 22 C 0.049 3.951 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.179 0.821 27 H 0.107 0.893 28 H 0.118 0.882 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.050 0.950 32 H 0.030 0.970 33 H 0.094 0.906 34 H 0.012 0.988 35 H 0.264 0.736 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.877 -2.495 11.968 16.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.258 4.258 3 C -0.151 4.151 4 N -0.080 5.080 5 N -0.137 5.137 6 C -0.011 4.011 7 C 0.274 3.726 8 O -0.398 6.398 9 N -0.325 5.325 10 C -0.061 4.061 11 C 0.160 3.840 12 H 0.081 0.919 13 C -0.206 4.206 14 C -0.566 4.566 15 H 0.076 0.924 16 C -0.138 4.138 17 N -0.525 5.525 18 Si 0.727 3.273 19 H -0.203 1.203 20 H -0.211 1.211 21 H -0.202 1.202 22 C -0.096 4.096 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.196 0.804 27 H 0.125 0.875 28 H 0.136 0.864 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.113 0.887 34 H 0.031 0.969 35 H 0.074 0.926 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -9.529 -1.671 11.398 14.950 hybrid contribution -0.541 -1.287 -0.652 1.541 sum -10.070 -2.958 10.746 15.021 Atomic orbital electron populations 1.20001 0.89595 1.01663 1.01328 1.20065 0.96816 0.91981 1.16967 1.23778 0.90167 0.99628 1.01503 1.77508 1.20756 0.88435 1.21312 1.48034 1.04538 1.04808 1.56285 1.21651 0.85334 0.93699 1.00442 1.20226 0.82557 0.83553 0.86257 1.90740 1.72129 1.30435 1.46475 1.48242 1.20416 1.34172 1.29687 1.21619 1.02369 0.90738 0.91414 1.18955 0.86195 0.97075 0.81783 0.91921 1.22096 1.00423 0.97132 1.00901 1.21257 1.30771 0.97083 1.07517 0.92356 1.24898 0.95311 0.96172 0.97385 1.69868 1.32063 1.24467 1.26089 0.86540 0.78107 0.82562 0.80071 1.20282 1.21124 1.20205 1.22260 0.84025 0.99927 1.03406 0.92335 0.92146 0.92481 0.80447 0.87492 0.86422 0.93028 0.90436 0.93104 0.95063 0.88734 0.96888 0.92568 0.81307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.37 36.01 0.37 -0.27 16 2 C -0.25 -3.28 6.10 -105.05 -0.64 -3.92 16 3 C 0.04 0.55 11.96 -17.36 -0.21 0.34 16 4 N -0.26 -4.85 11.64 30.62 0.36 -4.49 16 5 N -0.35 -5.84 3.40 -62.54 -0.21 -6.05 16 6 C 0.11 1.69 5.54 -5.19 -0.03 1.66 16 7 C 0.49 10.21 7.70 -10.99 -0.08 10.13 16 8 O -0.52 -13.55 15.03 5.56 0.08 -13.47 16 9 N -0.59 -12.37 2.75 -175.26 -0.48 -12.86 16 10 C 0.08 1.28 9.48 59.84 0.57 1.85 16 11 C 0.26 6.65 2.64 -69.08 -0.18 6.47 16 12 H 0.06 1.89 6.90 -51.92 -0.36 1.54 16 13 C -0.15 -3.53 8.95 37.16 0.33 -3.19 16 14 C -0.53 -14.19 8.37 -34.44 -0.29 -14.47 16 15 H 0.06 1.53 7.64 -52.49 -0.40 1.13 16 16 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 17 N -0.89 -25.21 11.32 55.43 0.63 -24.58 16 18 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 C 0.05 0.67 11.36 -17.23 -0.20 0.47 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.18 2.11 8.06 -52.49 -0.42 1.69 16 27 H 0.11 1.32 7.40 -51.93 -0.38 0.94 16 28 H 0.12 1.30 8.04 -51.93 -0.42 0.89 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.24 6.43 -51.93 -0.33 0.90 16 31 H 0.05 0.58 6.44 -51.93 -0.33 0.24 16 32 H 0.03 0.68 6.66 -51.93 -0.35 0.33 16 33 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 34 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.17 1.62 8.06 -52.48 -0.42 1.20 16 LS Contribution 303.50 15.07 4.57 4.57 Total: -1.00 -34.59 303.50 -5.51 -40.09 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -4.98 Total: 0.10 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -0.45 Total: 0.74 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: 0.29 Total: -47.98 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.08 Total: -13.47 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.59 -5.51 -40.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330582143.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.944 kcal (2) G-P(sol) polarization free energy of solvation -34.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds