Wall clock time and date at job start Sun Mar 29 2020 23:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39874 * 126.03736 * 2 1 4 4 N 1.30837 * 108.19824 * 179.97438 * 3 2 1 5 5 N 1.40084 * 108.20590 * 0.02562 * 4 3 2 6 6 C 1.46502 * 126.03309 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.47370 * 305.01845 * 6 5 4 8 8 O 1.21281 * 119.99661 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00362 * 180.02562 * 7 6 5 10 10 C 1.46493 * 120.00021 * 0.02562 * 9 7 6 11 11 C 1.46502 * 120.00128 * 179.97438 * 9 7 6 12 12 H 1.09009 * 109.47102 * 0.02562 * 11 9 7 13 13 C 1.52997 * 109.47035 * 119.99901 * 11 9 7 14 14 C 1.50703 * 109.47276 * 240.00386 * 11 9 7 15 15 H 1.08002 * 120.00104 * 359.97438 * 14 11 9 16 16 C 1.37876 * 119.99865 * 180.02562 * 14 11 9 17 17 N 1.31514 * 120.00147 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 119.99828 * 179.97438 * 16 14 11 19 19 H 1.48504 * 109.47081 * 59.99555 * 18 16 14 20 20 H 1.48496 * 109.47209 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46896 * 300.00057 * 18 16 14 22 22 C 1.34938 * 107.92933 * 359.75357 * 5 4 3 23 23 H 1.09002 * 109.47152 * 90.02757 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.02858 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.02839 * 1 2 3 26 26 H 1.07991 * 125.90010 * 359.94828 * 3 2 1 27 27 H 1.09000 * 109.47673 * 65.01768 * 6 5 4 28 28 H 1.09004 * 109.46824 * 185.02002 * 6 5 4 29 29 H 1.09007 * 109.47531 * 89.99456 * 10 9 7 30 30 H 1.09002 * 109.47218 * 209.99724 * 10 9 7 31 31 H 1.09006 * 109.47161 * 329.99811 * 10 9 7 32 32 H 1.09003 * 109.46813 * 60.00495 * 13 11 9 33 33 H 1.09003 * 109.47141 * 180.02562 * 13 11 9 34 34 H 1.08994 * 109.47465 * 300.00472 * 13 11 9 35 35 H 0.96994 * 120.00016 * 180.02562 * 17 16 14 36 36 H 1.08003 * 126.13278 * 180.23755 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1311 0.0000 4 7 3.5754 0.7303 0.0006 5 7 3.5844 -0.6706 0.0003 6 6 4.7746 -1.5248 0.0013 7 6 5.6592 -1.1551 -1.1614 8 8 5.3283 -0.2654 -1.9162 9 7 6.8181 -1.8132 -1.3624 10 6 7.2175 -2.8882 -0.4510 11 6 7.6778 -1.4542 -2.4930 12 1 7.2190 -0.6399 -3.0542 13 6 9.0450 -1.0069 -1.9722 14 6 7.8498 -2.6506 -3.3931 15 1 7.3674 -3.5851 -3.1473 16 6 8.6239 -2.5525 -4.5298 17 7 9.2118 -1.4147 -4.8289 18 14 8.8377 -4.0357 -5.6451 19 1 7.5108 -4.4700 -6.1509 20 1 9.7090 -3.6718 -6.7912 21 1 9.4628 -5.1443 -4.8799 22 6 2.3032 -1.0942 0.0051 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3633 0.8903 0.5134 25 1 -0.3633 -0.8898 0.5143 26 1 1.9951 2.1578 -0.0008 27 1 5.3220 -1.3842 0.9333 28 1 4.4729 -2.5683 -0.0891 29 1 6.8262 -3.8380 -0.8156 30 1 8.3053 -2.9381 -0.4025 31 1 6.8183 -2.6886 0.5435 32 1 9.5040 -1.8208 -1.4109 33 1 9.6845 -0.7394 -2.8134 34 1 8.9206 -0.1416 -1.3212 35 1 9.7560 -1.3456 -5.6287 36 1 1.9724 -2.1223 0.0099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330582143.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:21:08 Heat of formation + Delta-G solvation = 24.973556 kcal Electronic energy + Delta-G solvation = -18408.604004 eV Core-core repulsion = 15508.125107 eV Total energy + Delta-G solvation = -2900.478896 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.14800 -40.57825 -37.19658 -35.01082 -34.42032 -32.48356 -31.55923 -29.15532 -27.62045 -27.30083 -26.40984 -23.49314 -21.91475 -21.22235 -19.93112 -18.58756 -18.23156 -17.54142 -17.02139 -16.61047 -16.13857 -15.56711 -15.09850 -14.65824 -14.37794 -14.28724 -13.99881 -13.80798 -13.57662 -13.45301 -13.14397 -12.96481 -12.92312 -12.71356 -12.63615 -12.62211 -12.19681 -12.14256 -11.37119 -11.21969 -10.94106 -10.55171 -10.23037 -9.36834 -9.17466 -8.16061 -6.33630 0.99671 1.40530 1.43273 1.50644 1.57596 1.70376 1.95962 2.28341 2.46888 3.11909 3.52193 3.76963 4.01311 4.08764 4.21462 4.43692 4.53647 4.64435 4.68046 4.79348 4.85141 4.97539 5.01975 5.04740 5.06323 5.28716 5.36513 5.42843 5.56919 5.63873 5.80473 5.99684 6.12945 6.18398 6.74467 6.76546 6.84282 7.28304 7.43660 8.88307 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.033466 B = 0.004919 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.480557 B = 5690.459875 C = 5852.253760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.255 4.255 3 C 0.027 3.973 4 N -0.325 5.325 5 N -0.371 5.371 6 C 0.125 3.875 7 C 0.478 3.522 8 O -0.588 6.588 9 N -0.598 5.598 10 C 0.076 3.924 11 C 0.263 3.737 12 H 0.001 0.999 13 C -0.133 4.133 14 C -0.538 4.538 15 H 0.065 0.935 16 C 0.012 3.988 17 N -0.920 5.920 18 Si 0.968 3.032 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.259 1.259 22 C 0.049 3.951 23 H 0.059 0.941 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.196 0.804 27 H 0.137 0.863 28 H 0.165 0.835 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.016 0.984 35 H 0.264 0.736 36 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.201 -5.243 13.653 19.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.266 4.266 3 C -0.160 4.160 4 N -0.146 5.146 5 N -0.154 5.154 6 C 0.001 3.999 7 C 0.265 3.735 8 O -0.468 6.468 9 N -0.330 5.330 10 C -0.066 4.066 11 C 0.161 3.839 12 H 0.019 0.981 13 C -0.191 4.191 14 C -0.576 4.576 15 H 0.083 0.917 16 C -0.187 4.187 17 N -0.559 5.559 18 Si 0.792 3.208 19 H -0.203 1.203 20 H -0.211 1.211 21 H -0.183 1.183 22 C -0.096 4.096 23 H 0.077 0.923 24 H 0.090 0.910 25 H 0.096 0.904 26 H 0.213 0.787 27 H 0.154 0.846 28 H 0.182 0.818 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.119 0.881 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.035 0.965 35 H 0.073 0.927 36 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -10.860 -4.455 13.136 17.617 hybrid contribution -0.182 -0.385 -1.161 1.236 sum -11.043 -4.839 11.975 16.993 Atomic orbital electron populations 1.20061 0.86950 1.03302 1.01838 1.20572 0.98648 0.91223 1.16159 1.24300 0.89920 1.01341 1.00404 1.77422 1.22781 0.90399 1.23981 1.48200 1.05798 1.04270 1.57133 1.21790 0.84428 0.95568 0.98152 1.21352 0.82687 0.82281 0.87168 1.90706 1.73626 1.33248 1.49254 1.48227 1.20141 1.35433 1.29167 1.21958 1.02439 0.89532 0.92689 1.18500 0.87013 0.95018 0.83392 0.98148 1.21879 0.99295 0.97962 0.99971 1.21548 1.30567 0.97462 1.08035 0.91659 1.25798 0.95048 0.98946 0.98940 1.70034 1.32736 1.26597 1.26539 0.85469 0.77893 0.79351 0.78050 1.20282 1.21146 1.18307 1.23030 0.82877 1.01924 1.01739 0.92261 0.91030 0.90407 0.78677 0.84582 0.81805 0.91598 0.91031 0.88140 0.92849 0.91525 0.96514 0.92687 0.77187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.03 10.37 71.24 0.74 -0.30 16 2 C -0.25 -6.29 6.10 -20.14 -0.12 -6.41 16 3 C 0.03 0.80 11.96 85.24 1.02 1.82 16 4 N -0.33 -12.23 11.64 -57.03 -0.66 -12.89 16 5 N -0.37 -11.63 3.40 -351.79 -1.20 -12.83 16 6 C 0.12 3.35 5.54 85.63 0.47 3.83 16 7 C 0.48 19.87 7.70 87.66 0.68 20.54 16 8 O -0.59 -31.97 15.03 -3.03 -0.05 -32.02 16 9 N -0.60 -24.66 2.75 -826.78 -2.28 -26.94 16 10 C 0.08 2.10 9.48 127.77 1.21 3.31 16 11 C 0.26 13.88 2.64 44.24 0.12 13.99 16 12 H 0.00 0.03 6.90 -2.38 -0.02 0.02 16 13 C -0.13 -6.50 8.95 71.98 0.64 -5.86 16 14 C -0.54 -29.12 8.37 25.60 0.21 -28.91 16 15 H 0.07 3.36 7.64 -2.91 -0.02 3.33 16 16 C 0.01 0.66 5.30 84.65 0.45 1.11 16 17 N -0.92 -53.94 11.32 21.45 0.24 -53.70 16 18 Si 0.97 42.90 29.54 68.60 2.03 44.93 16 19 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 22 C 0.05 1.18 11.36 83.54 0.95 2.13 16 23 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 26 H 0.20 4.66 8.06 -2.92 -0.02 4.64 16 27 H 0.14 2.83 7.40 -2.39 -0.02 2.81 16 28 H 0.16 2.80 8.04 -2.38 -0.02 2.79 16 29 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 30 H 0.07 2.09 6.43 -2.39 -0.02 2.07 16 31 H 0.10 1.80 6.44 -2.38 -0.02 1.78 16 32 H 0.05 2.32 6.66 -2.39 -0.02 2.30 16 33 H 0.07 3.65 6.07 -2.39 -0.01 3.63 16 34 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 36 H 0.21 3.04 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -81.47 303.50 5.53 -75.95 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 1.07 Total: 12.22 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: 6.37 Total: 5.28 kcal Atomic # 7 Polarization: -102.47 SS G_CDS: -3.89 Total: -106.36 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -0.05 Total: -32.02 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -81.47 5.53 -75.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330582143.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.922 kcal (2) G-P(sol) polarization free energy of solvation -81.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds