Wall clock time and date at job start Sun Mar 29 2020 23:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39872 * 126.04035 * 2 1 4 4 N 1.30834 * 108.20491 * 179.74386 * 3 2 1 5 5 N 1.40089 * 108.20432 * 0.40518 * 4 3 2 6 6 C 1.46498 * 126.03615 * 179.85317 * 5 4 3 7 7 C 1.50696 * 109.47436 * 304.68973 * 6 5 4 8 8 O 1.21287 * 119.99868 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00122 * 180.02562 * 7 6 5 10 10 C 1.46505 * 120.00035 * 359.97438 * 9 7 6 11 11 C 1.46506 * 120.00092 * 179.97438 * 9 7 6 12 12 H 1.08996 * 109.46660 * 0.02562 * 11 9 7 13 13 C 1.52997 * 109.47289 * 239.99940 * 11 9 7 14 14 C 1.50699 * 109.46928 * 120.00010 * 11 9 7 15 15 H 1.08003 * 119.99962 * 0.02562 * 14 11 9 16 16 C 1.37874 * 120.00270 * 180.02562 * 14 11 9 17 17 N 1.31516 * 119.99500 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00390 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46755 * 90.00226 * 18 16 14 20 20 H 1.48498 * 109.46866 * 210.00212 * 18 16 14 21 21 H 1.48496 * 109.47178 * 330.00276 * 18 16 14 22 22 C 1.34948 * 107.92497 * 359.58747 * 5 4 3 23 23 H 1.09004 * 109.46857 * 269.99688 * 1 2 3 24 24 H 1.08999 * 109.47817 * 29.99504 * 1 2 3 25 25 H 1.09000 * 109.47271 * 150.00462 * 1 2 3 26 26 H 1.07999 * 125.89670 * 0.02562 * 3 2 1 27 27 H 1.09000 * 109.47037 * 184.68574 * 6 5 4 28 28 H 1.09005 * 109.47271 * 64.68950 * 6 5 4 29 29 H 1.08999 * 109.46723 * 270.00200 * 10 9 7 30 30 H 1.08997 * 109.46979 * 29.99903 * 10 9 7 31 31 H 1.09005 * 109.46961 * 150.00254 * 10 9 7 32 32 H 1.09002 * 109.47153 * 179.97438 * 13 11 9 33 33 H 1.09001 * 109.46832 * 60.00146 * 13 11 9 34 34 H 1.09004 * 109.47261 * 300.00128 * 13 11 9 35 35 H 0.97002 * 119.99804 * 180.02562 * 17 16 14 36 36 H 1.07995 * 126.12736 * 180.21944 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7303 0.0056 5 7 3.5844 -0.6706 -0.0001 6 6 4.7746 -1.5247 0.0002 7 6 5.6580 -1.1560 -1.1637 8 8 5.3263 -0.2668 -1.9189 9 7 6.8166 -1.8142 -1.3654 10 6 7.2175 -2.8879 -0.4528 11 6 7.6751 -1.4561 -2.4972 12 1 7.2158 -0.6424 -3.0584 13 6 7.8489 -2.6715 -3.4102 14 6 9.0224 -1.0152 -1.9859 15 1 9.2196 -1.0034 -0.9241 16 6 10.0034 -0.6269 -2.8735 17 7 9.7630 -0.6408 -4.1665 18 14 11.6732 -0.0797 -2.2397 19 1 12.5750 -1.2555 -2.1419 20 1 12.2562 0.9149 -3.1757 21 1 11.5157 0.5363 -0.8978 22 6 2.3032 -1.0942 0.0000 23 1 -0.3633 -0.0001 1.0277 24 1 -0.3635 0.8900 -0.5137 25 1 -0.3634 -0.8900 -0.5138 26 1 1.9951 2.1578 0.0004 27 1 4.4729 -2.5683 -0.0890 28 1 5.3230 -1.3835 0.9316 29 1 7.8081 -2.4701 0.3625 30 1 6.3286 -3.3708 -0.0472 31 1 7.8143 -3.6216 -0.9949 32 1 8.4873 -2.4049 -4.2525 33 1 6.8743 -2.9903 -3.7800 34 1 8.3084 -3.4850 -2.8487 35 1 10.4533 -0.3680 -4.7910 36 1 1.9725 -2.1223 -0.0004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330582144.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:21:11 Heat of formation + Delta-G solvation = 49.068964 kcal Electronic energy + Delta-G solvation = -18404.536167 eV Core-core repulsion = 15505.102126 eV Total energy + Delta-G solvation = -2899.434041 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.03736 -38.98278 -35.42096 -33.54975 -32.79697 -31.44086 -29.77553 -27.95768 -26.22571 -25.43054 -25.17836 -21.92388 -20.52536 -20.14642 -18.36987 -16.94831 -16.63380 -16.18314 -15.30574 -15.07715 -14.48190 -14.28915 -13.85497 -13.36578 -13.02671 -12.94894 -12.70545 -12.64150 -12.44442 -11.96028 -11.80044 -11.59582 -11.56442 -11.09032 -10.81724 -10.73847 -10.30763 -10.25100 -10.18739 -9.50110 -9.19668 -8.87967 -8.44911 -8.12941 -7.66450 -6.08814 -4.16986 2.08424 2.62862 3.01707 3.21328 3.25796 3.33309 3.36816 3.83537 4.37959 4.67857 4.87933 4.95827 5.14164 5.22672 5.24355 5.34949 5.52906 5.57891 5.70886 5.93267 5.96511 6.03485 6.20359 6.25418 6.70867 6.75634 6.85137 6.99779 7.13207 7.37280 7.47243 7.68277 7.95378 7.98251 8.15766 8.43649 8.79609 8.96460 9.49500 10.96614 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.037965 B = 0.004837 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.335490 B = 5787.792386 C = 5959.519478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.247 4.247 3 C 0.036 3.964 4 N -0.257 5.257 5 N -0.355 5.355 6 C 0.114 3.886 7 C 0.490 3.510 8 O -0.522 6.522 9 N -0.592 5.592 10 C 0.083 3.917 11 C 0.259 3.741 12 H 0.063 0.937 13 C -0.147 4.147 14 C -0.526 4.526 15 H 0.059 0.941 16 C 0.065 3.935 17 N -0.888 5.888 18 Si 0.899 3.101 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.048 3.952 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.179 0.821 27 H 0.117 0.883 28 H 0.108 0.892 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.011 0.989 34 H 0.031 0.969 35 H 0.264 0.736 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.978 -5.435 9.426 16.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.258 4.258 3 C -0.151 4.151 4 N -0.077 5.077 5 N -0.137 5.137 6 C -0.011 4.011 7 C 0.274 3.726 8 O -0.398 6.398 9 N -0.325 5.325 10 C -0.061 4.061 11 C 0.159 3.841 12 H 0.081 0.919 13 C -0.205 4.205 14 C -0.565 4.565 15 H 0.077 0.923 16 C -0.138 4.138 17 N -0.526 5.526 18 Si 0.727 3.273 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.098 4.098 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.196 0.804 27 H 0.135 0.865 28 H 0.126 0.874 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.030 0.970 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -11.670 -4.656 8.823 15.353 hybrid contribution 0.273 -0.152 0.328 0.453 sum -11.397 -4.808 9.151 15.387 Atomic orbital electron populations 1.19996 0.89602 1.01901 1.01064 1.20065 0.96801 0.91985 1.16983 1.23793 0.90166 0.99648 1.01515 1.77557 1.20701 0.88378 1.21093 1.48049 1.04500 1.04848 1.56292 1.21648 0.85406 0.93443 1.00640 1.20231 0.82614 0.83488 0.86269 1.90740 1.72507 1.30000 1.46547 1.48246 1.20042 1.34409 1.29825 1.21614 0.99391 0.90969 0.94118 1.18960 0.88511 0.94417 0.82166 0.91901 1.22099 0.98595 0.97830 1.01987 1.21300 0.96780 1.44984 0.93386 0.92261 1.24896 0.98877 0.95213 0.94802 1.69879 1.34053 1.47488 1.01185 0.86475 0.83554 0.78466 0.78792 1.20609 1.21068 1.19908 1.22246 0.84043 0.99882 1.03601 0.92499 0.92049 0.92455 0.80440 0.86509 0.87386 0.92958 0.93200 0.90442 0.88715 0.97019 0.95031 0.92653 0.81348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.37 36.00 0.37 -0.26 16 2 C -0.25 -3.25 6.10 -105.05 -0.64 -3.89 16 3 C 0.04 0.55 11.96 -17.37 -0.21 0.34 16 4 N -0.26 -4.88 11.66 30.62 0.36 -4.52 16 5 N -0.35 -5.84 3.39 -62.55 -0.21 -6.05 16 6 C 0.11 1.69 5.54 -5.20 -0.03 1.66 16 7 C 0.49 10.20 7.71 -10.99 -0.08 10.12 16 8 O -0.52 -13.55 15.05 5.55 0.08 -13.47 16 9 N -0.59 -12.37 2.75 -175.26 -0.48 -12.85 16 10 C 0.08 1.28 9.48 59.85 0.57 1.85 16 11 C 0.26 6.64 2.63 -69.08 -0.18 6.46 16 12 H 0.06 1.90 6.90 -51.93 -0.36 1.54 16 13 C -0.15 -3.47 8.95 37.16 0.33 -3.14 16 14 C -0.53 -14.28 8.37 -34.44 -0.29 -14.56 16 15 H 0.06 1.58 7.65 -52.48 -0.40 1.18 16 16 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 17 N -0.89 -25.31 11.32 55.43 0.63 -24.68 16 18 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 C 0.05 0.63 11.36 -17.22 -0.20 0.44 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.18 2.15 8.06 -52.49 -0.42 1.73 16 27 H 0.12 1.22 7.33 -51.93 -0.38 0.84 16 28 H 0.11 1.40 8.11 -51.93 -0.42 0.98 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.55 6.44 -51.93 -0.33 0.21 16 31 H 0.08 1.22 6.43 -51.93 -0.33 0.88 16 32 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 33 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.03 0.68 6.66 -51.93 -0.35 0.33 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 303.53 15.07 4.57 4.57 Total: -1.00 -34.85 303.53 -5.51 -40.36 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -4.98 Total: -0.23 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -0.45 Total: 0.69 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 0.29 Total: -48.11 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.08 Total: -13.47 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.85 -5.51 -40.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330582144.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.430 kcal (2) G-P(sol) polarization free energy of solvation -34.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds