Wall clock time and date at job start Sun Mar 29 2020 23:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39872 * 126.04035 * 2 1 4 4 N 1.30834 * 108.20491 * 179.74386 * 3 2 1 5 5 N 1.40089 * 108.20432 * 0.40518 * 4 3 2 6 6 C 1.46498 * 126.03615 * 179.85317 * 5 4 3 7 7 C 1.50696 * 109.47436 * 304.68973 * 6 5 4 8 8 O 1.21287 * 119.99868 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00122 * 180.02562 * 7 6 5 10 10 C 1.46505 * 120.00035 * 359.97438 * 9 7 6 11 11 C 1.46506 * 120.00092 * 179.97438 * 9 7 6 12 12 H 1.08996 * 109.46660 * 0.02562 * 11 9 7 13 13 C 1.52997 * 109.47289 * 239.99940 * 11 9 7 14 14 C 1.50699 * 109.46928 * 120.00010 * 11 9 7 15 15 H 1.08003 * 119.99962 * 0.02562 * 14 11 9 16 16 C 1.37874 * 120.00270 * 180.02562 * 14 11 9 17 17 N 1.31516 * 119.99500 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00390 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46755 * 90.00226 * 18 16 14 20 20 H 1.48498 * 109.46866 * 210.00212 * 18 16 14 21 21 H 1.48496 * 109.47178 * 330.00276 * 18 16 14 22 22 C 1.34948 * 107.92497 * 359.58747 * 5 4 3 23 23 H 1.09004 * 109.46857 * 269.99688 * 1 2 3 24 24 H 1.08999 * 109.47817 * 29.99504 * 1 2 3 25 25 H 1.09000 * 109.47271 * 150.00462 * 1 2 3 26 26 H 1.07999 * 125.89670 * 0.02562 * 3 2 1 27 27 H 1.09000 * 109.47037 * 184.68574 * 6 5 4 28 28 H 1.09005 * 109.47271 * 64.68950 * 6 5 4 29 29 H 1.08999 * 109.46723 * 270.00200 * 10 9 7 30 30 H 1.08997 * 109.46979 * 29.99903 * 10 9 7 31 31 H 1.09005 * 109.46961 * 150.00254 * 10 9 7 32 32 H 1.09002 * 109.47153 * 179.97438 * 13 11 9 33 33 H 1.09001 * 109.46832 * 60.00146 * 13 11 9 34 34 H 1.09004 * 109.47261 * 300.00128 * 13 11 9 35 35 H 0.97002 * 119.99804 * 180.02562 * 17 16 14 36 36 H 1.07995 * 126.12736 * 180.21944 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7303 0.0056 5 7 3.5844 -0.6706 -0.0001 6 6 4.7746 -1.5247 0.0002 7 6 5.6580 -1.1560 -1.1637 8 8 5.3263 -0.2668 -1.9189 9 7 6.8166 -1.8142 -1.3654 10 6 7.2175 -2.8879 -0.4528 11 6 7.6751 -1.4561 -2.4972 12 1 7.2158 -0.6424 -3.0584 13 6 7.8489 -2.6715 -3.4102 14 6 9.0224 -1.0152 -1.9859 15 1 9.2196 -1.0034 -0.9241 16 6 10.0034 -0.6269 -2.8735 17 7 9.7630 -0.6408 -4.1665 18 14 11.6732 -0.0797 -2.2397 19 1 12.5750 -1.2555 -2.1419 20 1 12.2562 0.9149 -3.1757 21 1 11.5157 0.5363 -0.8978 22 6 2.3032 -1.0942 0.0000 23 1 -0.3633 -0.0001 1.0277 24 1 -0.3635 0.8900 -0.5137 25 1 -0.3634 -0.8900 -0.5138 26 1 1.9951 2.1578 0.0004 27 1 4.4729 -2.5683 -0.0890 28 1 5.3230 -1.3835 0.9316 29 1 7.8081 -2.4701 0.3625 30 1 6.3286 -3.3708 -0.0472 31 1 7.8143 -3.6216 -0.9949 32 1 8.4873 -2.4049 -4.2525 33 1 6.8743 -2.9903 -3.7800 34 1 8.3084 -3.4850 -2.8487 35 1 10.4533 -0.3680 -4.7910 36 1 1.9725 -2.1223 -0.0004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330582144.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:21:11 Heat of formation + Delta-G solvation = 24.809590 kcal Electronic energy + Delta-G solvation = -18405.588132 eV Core-core repulsion = 15505.102126 eV Total energy + Delta-G solvation = -2900.486006 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.14705 -40.57748 -37.19640 -35.01503 -34.42285 -32.48474 -31.55869 -29.14962 -27.61790 -27.30590 -26.40876 -23.48802 -21.92004 -21.22473 -19.92168 -18.55774 -18.23803 -17.63265 -17.03316 -16.52454 -16.12983 -15.55427 -15.16699 -14.68970 -14.30213 -14.29217 -13.99748 -13.87621 -13.53254 -13.45308 -13.11376 -12.98202 -12.94023 -12.71600 -12.63748 -12.60038 -12.20899 -12.16208 -11.35875 -11.21409 -10.93066 -10.55918 -10.23739 -9.37163 -9.17194 -8.17347 -6.34280 1.00563 1.38356 1.40954 1.50263 1.57730 1.69612 1.96247 2.29651 2.45653 3.10639 3.54530 3.72781 3.99676 4.12536 4.21193 4.44874 4.53550 4.64691 4.67951 4.78792 4.85910 4.97107 5.01709 5.06783 5.07159 5.28905 5.36667 5.43124 5.57766 5.63562 5.80205 6.00644 6.13177 6.19455 6.73888 6.76555 6.84973 7.27958 7.43280 8.86952 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.037965 B = 0.004837 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.335490 B = 5787.792386 C = 5959.519478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.255 4.255 3 C 0.026 3.974 4 N -0.328 5.328 5 N -0.371 5.371 6 C 0.125 3.875 7 C 0.478 3.522 8 O -0.588 6.588 9 N -0.598 5.598 10 C 0.076 3.924 11 C 0.262 3.738 12 H 0.001 0.999 13 C -0.131 4.131 14 C -0.539 4.539 15 H 0.060 0.940 16 C 0.014 3.986 17 N -0.918 5.918 18 Si 0.966 3.034 19 H -0.264 1.264 20 H -0.287 1.287 21 H -0.273 1.273 22 C 0.051 3.949 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.195 0.805 27 H 0.172 0.828 28 H 0.130 0.870 29 H 0.057 0.943 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.020 0.980 34 H 0.053 0.947 35 H 0.264 0.736 36 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.901 -7.590 11.552 19.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.266 4.266 3 C -0.160 4.160 4 N -0.149 5.149 5 N -0.154 5.154 6 C 0.000 4.000 7 C 0.265 3.735 8 O -0.468 6.468 9 N -0.330 5.330 10 C -0.066 4.066 11 C 0.160 3.840 12 H 0.019 0.981 13 C -0.189 4.189 14 C -0.577 4.577 15 H 0.079 0.921 16 C -0.186 4.186 17 N -0.557 5.557 18 Si 0.791 3.209 19 H -0.189 1.189 20 H -0.213 1.213 21 H -0.197 1.197 22 C -0.094 4.094 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.211 0.789 27 H 0.189 0.811 28 H 0.147 0.853 29 H 0.075 0.925 30 H 0.124 0.876 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.040 0.960 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -12.603 -6.852 10.994 18.074 hybrid contribution 0.483 0.537 -0.340 0.798 sum -12.120 -6.315 10.653 17.329 Atomic orbital electron populations 1.20057 0.86892 1.02846 1.02314 1.20576 0.98662 0.91176 1.16210 1.24294 0.89943 1.01366 1.00438 1.77464 1.22843 0.90584 1.24007 1.48204 1.05847 1.04199 1.57148 1.21789 0.84476 0.95721 0.97968 1.21359 0.82772 0.82235 0.87130 1.90707 1.74007 1.32827 1.49282 1.48232 1.19663 1.35666 1.29411 1.21955 1.02147 0.89408 0.93070 1.18506 0.88214 0.93407 0.83850 0.98107 1.21861 0.98645 0.97603 1.00834 1.21580 0.97569 1.45119 0.93452 0.92137 1.25757 1.02636 0.95237 0.94957 1.70031 1.35157 1.48210 1.02343 0.85444 0.79233 0.78356 0.77915 1.18865 1.21269 1.19735 1.23048 0.82708 1.01970 1.01638 0.90999 0.91712 0.90942 0.78857 0.81113 0.85269 0.92473 0.87628 0.90723 0.91609 0.96045 0.92812 0.92658 0.76869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.00 10.37 71.24 0.74 -0.26 16 2 C -0.25 -6.21 6.10 -20.14 -0.12 -6.34 16 3 C 0.03 0.79 11.96 85.24 1.02 1.81 16 4 N -0.33 -12.62 11.66 -57.02 -0.66 -13.28 16 5 N -0.37 -11.61 3.39 -351.80 -1.19 -12.81 16 6 C 0.12 3.34 5.54 85.63 0.47 3.82 16 7 C 0.48 19.85 7.71 87.66 0.68 20.52 16 8 O -0.59 -31.94 15.05 -3.05 -0.05 -31.99 16 9 N -0.60 -24.67 2.75 -826.79 -2.28 -26.95 16 10 C 0.08 2.12 9.48 127.77 1.21 3.33 16 11 C 0.26 13.84 2.63 44.24 0.12 13.96 16 12 H 0.00 0.06 6.90 -2.39 -0.02 0.04 16 13 C -0.13 -6.28 8.95 71.98 0.64 -5.63 16 14 C -0.54 -29.74 8.37 25.60 0.21 -29.52 16 15 H 0.06 3.24 7.65 -2.91 -0.02 3.21 16 16 C 0.01 0.76 5.30 84.65 0.45 1.21 16 17 N -0.92 -53.97 11.32 21.45 0.24 -53.73 16 18 Si 0.97 43.77 29.54 68.60 2.03 45.79 16 19 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 20 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 22 C 0.05 1.19 11.36 83.54 0.95 2.14 16 23 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 24 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.19 4.75 8.06 -2.91 -0.02 4.73 16 27 H 0.17 2.61 7.33 -2.39 -0.02 2.59 16 28 H 0.13 2.91 8.11 -2.38 -0.02 2.89 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.11 1.75 6.44 -2.39 -0.02 1.74 16 31 H 0.07 2.13 6.43 -2.38 -0.02 2.12 16 32 H 0.07 3.55 6.07 -2.39 -0.01 3.53 16 33 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.05 2.28 6.66 -2.38 -0.02 2.26 16 35 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 36 H 0.21 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -82.66 303.53 5.53 -77.13 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 1.07 Total: 10.79 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 6.37 Total: 5.03 kcal Atomic # 7 Polarization: -102.87 SS G_CDS: -3.89 Total: -106.76 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -0.05 Total: -31.99 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -82.66 5.53 -77.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330582144.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.938 kcal (2) G-P(sol) polarization free energy of solvation -82.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds