Wall clock time and date at job start Sun Mar 29 2020 23:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29945 * 126.28990 * 2 1 4 4 O 1.21303 * 110.25455 * 179.68634 * 3 2 1 5 5 C 1.33647 * 109.80703 * 0.46037 * 4 3 2 6 6 C 1.50700 * 126.54911 * 179.80500 * 5 4 3 7 7 H 1.08996 * 110.90450 * 177.27409 * 6 5 4 8 8 C 1.55142 * 110.99048 * 301.14491 * 6 5 4 9 9 C 1.54312 * 103.17714 * 153.83199 * 8 6 5 10 10 N 1.47443 * 107.23612 * 337.62814 * 9 8 6 11 11 C 1.46900 * 111.00227 * 236.74273 * 10 9 8 12 12 C 1.52992 * 109.47131 * 290.12352 * 11 10 9 13 13 C 1.50702 * 109.47371 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99951 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00341 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99839 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99969 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47117 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47048 * 119.99704 * 17 15 13 20 20 H 1.48499 * 109.46795 * 239.99390 * 17 15 13 21 21 C 1.47844 * 108.56494 * 359.01050 * 10 9 8 22 22 N 1.31123 * 106.89770 * 359.54326 * 5 4 3 23 23 H 1.09009 * 109.47143 * 270.02888 * 1 2 3 24 24 H 1.08995 * 109.47198 * 30.03071 * 1 2 3 25 25 H 1.09001 * 109.47029 * 150.03379 * 1 2 3 26 26 H 1.09002 * 110.70816 * 35.36047 * 8 6 5 27 27 H 1.09005 * 110.70106 * 272.30188 * 8 6 5 28 28 H 1.08997 * 109.89327 * 97.03090 * 9 8 6 29 29 H 1.09001 * 109.89155 * 218.05905 * 9 8 6 30 30 H 1.08998 * 109.46669 * 50.12444 * 11 10 9 31 31 H 1.08999 * 109.47032 * 170.11876 * 11 10 9 32 32 H 1.08998 * 109.47419 * 299.99632 * 12 11 10 33 33 H 1.08999 * 109.47551 * 59.99842 * 12 11 10 34 34 H 0.97000 * 119.99796 * 179.97438 * 16 15 13 35 35 H 1.08999 * 110.37744 * 142.93014 * 21 10 9 36 36 H 1.09007 * 110.37325 * 265.15824 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2760 1.0474 0.0000 4 8 3.4419 0.7123 0.0062 5 6 3.5298 -0.6212 0.0008 6 6 4.7969 -1.4371 0.0015 7 1 4.5732 -2.5029 0.0446 8 6 5.6737 -1.1027 -1.2340 9 6 7.1004 -1.4450 -0.7558 10 7 7.0908 -1.3960 0.7178 11 6 8.0954 -0.4490 1.2197 12 6 9.4962 -1.0099 0.9668 13 6 10.5268 -0.0381 1.4811 14 1 10.2140 0.8869 1.9425 15 6 11.8692 -0.3298 1.3625 16 7 12.2501 -1.4564 0.8010 17 14 13.1466 0.8744 2.0006 18 1 12.4640 2.0570 2.5843 19 1 13.9721 0.2140 3.0435 20 1 14.0193 1.3098 0.8807 21 6 5.7343 -1.0170 1.1673 22 7 2.3030 -1.0841 0.0006 23 1 -0.3634 0.0005 1.0277 24 1 -0.3633 0.8897 -0.5143 25 1 -0.3633 -0.8903 -0.5133 26 1 5.5954 -0.0455 -1.4875 27 1 5.3932 -1.7235 -2.0850 28 1 7.3742 -2.4451 -1.0916 29 1 7.8083 -0.7153 -1.1488 30 1 7.9867 0.5041 0.7021 31 1 7.9514 -0.2998 2.2898 32 1 9.6049 -1.9629 1.4844 33 1 9.6401 -1.1591 -0.1033 34 1 13.1945 -1.6615 0.7172 35 1 5.4718 -1.5559 2.0777 36 1 5.6764 0.0587 1.3339 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332324429.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:34:45 Heat of formation + Delta-G solvation = 40.586788 kcal Electronic energy + Delta-G solvation = -17996.280883 eV Core-core repulsion = 15096.479027 eV Total energy + Delta-G solvation = -2899.801856 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -46.68979 -40.15958 -37.16729 -35.91391 -34.64521 -32.98853 -30.49156 -30.29798 -29.71010 -26.51125 -24.85493 -23.96795 -23.34560 -21.53269 -21.08181 -19.14952 -18.58178 -18.38910 -17.45295 -16.67471 -16.50247 -15.43704 -15.15541 -14.67076 -14.62565 -14.50430 -14.43224 -14.08495 -13.69745 -13.38863 -13.14813 -13.06839 -13.00569 -12.71509 -12.50041 -12.35187 -12.18877 -12.16423 -11.88935 -11.64100 -11.35636 -11.21609 -10.90257 -10.53196 -9.22622 -8.18044 -6.28699 -0.00229 1.10976 1.41627 1.42139 1.55059 1.66433 2.41341 2.51803 2.99990 3.15706 3.17609 3.45312 3.54681 3.83347 4.12444 4.24547 4.33583 4.44938 4.51043 4.56775 4.57498 4.64059 4.70604 4.81563 4.83730 4.95025 4.98063 5.07208 5.11612 5.20510 5.48785 5.68592 5.80409 6.08331 6.14930 6.33368 6.88944 7.05155 7.40313 8.94114 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.053043 B = 0.003719 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.751799 B = 7526.400319 C = 7803.742149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.165 3.835 3 N -0.411 5.411 4 O 0.061 5.939 5 C 0.208 3.792 6 C 0.001 3.999 7 H 0.147 0.853 8 C -0.121 4.121 9 C 0.043 3.957 10 N -0.537 5.537 11 C 0.074 3.926 12 C 0.037 3.963 13 C -0.544 4.544 14 H 0.059 0.941 15 C 0.002 3.998 16 N -0.930 5.930 17 Si 0.963 3.037 18 H -0.263 1.263 19 H -0.278 1.278 20 H -0.278 1.278 21 C 0.051 3.949 22 N -0.497 5.497 23 H 0.104 0.896 24 H 0.098 0.902 25 H 0.105 0.895 26 H 0.074 0.926 27 H 0.109 0.891 28 H 0.083 0.917 29 H 0.049 0.951 30 H 0.026 0.974 31 H 0.063 0.937 32 H -0.006 1.006 33 H -0.003 1.003 34 H 0.263 0.737 35 H 0.097 0.903 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.278 1.132 -3.226 21.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.107 4.107 3 N -0.124 5.124 4 O 0.008 5.992 5 C -0.012 4.012 6 C -0.019 4.019 7 H 0.164 0.836 8 C -0.160 4.160 9 C -0.084 4.084 10 N -0.261 5.261 11 C -0.054 4.054 12 C 0.000 4.000 13 C -0.582 4.582 14 H 0.077 0.923 15 C -0.196 4.196 16 N -0.570 5.570 17 Si 0.788 3.212 18 H -0.187 1.187 19 H -0.204 1.204 20 H -0.204 1.204 21 C -0.078 4.078 22 N -0.232 5.232 23 H 0.122 0.878 24 H 0.117 0.883 25 H 0.124 0.876 26 H 0.092 0.908 27 H 0.127 0.873 28 H 0.101 0.899 29 H 0.067 0.933 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.013 0.987 33 H 0.015 0.985 34 H 0.072 0.928 35 H 0.115 0.885 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -21.630 1.069 -3.065 21.873 hybrid contribution 1.094 1.192 -0.009 1.618 sum -20.536 2.261 -3.074 20.888 Atomic orbital electron populations 1.20379 0.80021 1.05927 1.05678 1.26737 1.02269 0.82930 0.98800 1.74660 0.89561 1.24876 1.23319 1.85273 1.22545 1.25256 1.66164 1.28716 0.96730 0.81787 0.93980 1.21115 0.84244 0.98885 0.97695 0.83571 1.22883 0.93032 1.03053 0.97064 1.22843 0.96062 1.02346 0.87197 1.63638 1.03687 1.49158 1.09664 1.22170 0.92085 0.92166 0.98968 1.18897 0.90701 0.95143 0.95286 1.21669 0.92156 1.05316 1.39091 0.92304 1.25923 1.01030 0.97169 0.95469 1.70107 1.16539 1.25161 1.45210 0.85424 0.78625 0.79032 0.78105 1.18680 1.20417 1.20405 1.23222 0.87079 0.99797 0.97656 1.71948 0.99836 1.29833 1.21544 0.87760 0.88296 0.87611 0.90771 0.87279 0.89874 0.93270 0.95615 0.91891 0.98749 0.98510 0.92784 0.88497 0.93189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.78 10.51 71.23 0.75 -0.03 16 2 C 0.17 3.71 8.22 138.46 1.14 4.85 16 3 N -0.41 -10.86 12.16 -60.30 -0.73 -11.59 16 4 O 0.06 1.63 11.22 74.79 0.84 2.47 16 5 C 0.21 4.97 7.14 88.38 0.63 5.60 16 6 C 0.00 0.03 3.59 -9.99 -0.04 -0.01 16 7 H 0.15 2.74 8.14 -2.39 -0.02 2.72 16 8 C -0.12 -2.62 6.38 31.77 0.20 -2.41 16 9 C 0.04 1.28 6.20 86.64 0.54 1.81 16 10 N -0.54 -18.05 5.16 -884.57 -4.56 -22.61 16 11 C 0.07 3.03 4.48 86.30 0.39 3.41 16 12 C 0.04 1.95 5.00 29.85 0.15 2.10 16 13 C -0.54 -30.81 9.11 25.60 0.23 -30.58 16 14 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 15 C 0.00 0.12 5.46 84.66 0.46 0.58 16 16 N -0.93 -56.39 13.29 21.45 0.28 -56.11 16 17 Si 0.96 44.14 29.54 68.60 2.03 46.17 16 18 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 C 0.05 1.34 6.16 86.94 0.54 1.87 16 22 N -0.50 -12.06 11.55 -303.18 -3.50 -15.57 16 23 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 24 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.07 1.63 8.03 -2.39 -0.02 1.61 16 27 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 28 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.05 1.65 6.92 -2.39 -0.02 1.64 16 30 H 0.03 1.04 7.96 -2.39 -0.02 1.02 16 31 H 0.06 2.54 8.07 -2.39 -0.02 2.52 16 32 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 33 H 0.00 -0.19 7.14 -2.39 -0.02 -0.21 16 34 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 35 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.05 1.35 7.63 -2.38 -0.02 1.33 16 Total: -1.00 -67.56 303.44 0.40 -67.16 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: 1.06 Total: 2.88 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: 4.99 Total: -12.79 kcal Atomic # 7 Polarization: -97.37 SS G_CDS: -8.51 Total: -105.88 kcal Atomic # 8 Polarization: 1.63 SS G_CDS: 0.84 Total: 2.47 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -67.56 0.40 -67.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332324429.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.742 kcal (2) G-P(sol) polarization free energy of solvation -67.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds