Wall clock time and date at job start Sun Mar 29 2020 22:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38112 * 126.29689 * 2 1 4 4 C 1.47359 * 126.42375 * 359.97438 * 3 2 1 5 5 O 1.21630 * 119.99737 * 344.17082 * 4 3 2 6 6 N 1.34773 * 119.99874 * 164.16750 * 4 3 2 7 7 C 1.46500 * 120.00078 * 4.32859 * 6 4 3 8 8 C 1.36981 * 119.99877 * 184.32867 * 6 4 3 9 9 H 1.08003 * 119.99801 * 22.78640 * 8 6 4 10 10 C 1.38979 * 120.00245 * 202.79310 * 8 6 4 11 11 N 1.31412 * 119.99531 * 14.73522 * 10 8 6 12 12 Si 1.86800 * 120.00091 * 194.74121 * 10 8 6 13 13 H 1.48500 * 109.46980 * 94.97241 * 12 10 8 14 14 H 1.48493 * 109.46850 * 214.97135 * 12 10 8 15 15 H 1.48498 * 109.46875 * 334.97141 * 12 10 8 16 16 C 1.41323 * 107.15433 * 180.02562 * 3 2 1 17 17 N 1.30438 * 108.02586 * 359.97438 * 16 3 2 18 18 N 1.34288 * 126.30000 * 180.02562 * 2 1 3 19 19 C 1.46503 * 125.74914 * 0.02562 * 18 2 1 20 20 C 1.52993 * 109.47032 * 119.99838 * 19 18 2 21 21 C 1.52999 * 109.46826 * 240.00171 * 19 18 2 22 22 H 1.08992 * 109.47701 * 269.97968 * 1 2 3 23 23 H 1.09007 * 109.47053 * 29.98204 * 1 2 3 24 24 H 1.09001 * 109.46710 * 149.97324 * 1 2 3 25 25 H 1.08994 * 109.46914 * 83.94930 * 7 6 4 26 26 H 1.09007 * 109.46801 * 203.94305 * 7 6 4 27 27 H 1.08998 * 109.47277 * 323.94300 * 7 6 4 28 28 H 0.97002 * 119.99319 * 180.02562 * 11 10 8 29 29 H 1.07997 * 125.98408 * 180.02562 * 16 3 2 30 30 H 1.09004 * 109.46823 * 359.97438 * 19 18 2 31 31 H 1.09001 * 109.47401 * 59.99682 * 20 19 18 32 32 H 1.09003 * 109.47142 * 179.97438 * 20 19 18 33 33 H 1.09001 * 109.47370 * 300.00136 * 20 19 18 34 34 H 1.09003 * 109.46803 * 180.02562 * 21 19 18 35 35 H 1.09004 * 109.46985 * 299.99369 * 21 19 18 36 36 H 1.08991 * 109.47581 * 59.99685 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1131 0.0000 4 6 1.8869 2.5202 -0.0005 5 8 0.7387 2.7998 -0.2883 6 7 2.7588 3.4973 0.3180 7 6 4.1642 3.1707 0.5721 8 6 2.3310 4.7957 0.4041 9 1 1.2880 5.0097 0.5852 10 6 3.2390 5.8377 0.2582 11 7 4.4314 5.6047 -0.2427 12 14 2.7646 7.5692 0.7742 13 1 3.2385 7.8204 2.1589 14 1 3.3906 8.5497 -0.1487 15 1 1.2876 7.7138 0.7226 16 6 3.6597 0.6497 -0.0006 17 7 3.6342 -0.6544 -0.0004 18 7 2.3020 -1.0823 -0.0005 19 6 1.8505 -2.4760 -0.0016 20 6 2.3798 -3.1825 -1.2512 21 6 2.3790 -3.1842 1.2473 22 1 -0.3634 -0.0004 1.0275 23 1 -0.3633 0.8902 -0.5136 24 1 -0.3633 -0.8898 -0.5143 25 1 4.7023 3.1201 -0.3744 26 1 4.6082 3.9418 1.2017 27 1 4.2276 2.2073 1.0781 28 1 5.0653 6.3320 -0.3441 29 1 4.5457 1.2672 -0.0004 30 1 0.7608 -2.5048 -0.0016 31 1 3.4695 -3.1535 -1.2508 32 1 2.0443 -4.2196 -1.2518 33 1 2.0033 -2.6778 -2.1409 34 1 2.0434 -4.2213 1.2462 35 1 3.4686 -3.1554 1.2477 36 1 2.0019 -2.6809 2.1375 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334445085.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:05 Heat of formation + Delta-G solvation = 36.122674 kcal Electronic energy + Delta-G solvation = -18796.281508 eV Core-core repulsion = 15896.286074 eV Total energy + Delta-G solvation = -2899.995434 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.43284 -39.87488 -36.70040 -36.53203 -33.74150 -33.17873 -31.09993 -28.52350 -28.19235 -28.12849 -26.36764 -23.96524 -22.98019 -20.69823 -19.89898 -19.00020 -17.90386 -17.15551 -16.52980 -16.46570 -15.91407 -15.50553 -15.43652 -15.11787 -14.40485 -14.10468 -14.09458 -13.60295 -13.56038 -13.37159 -13.20594 -13.05314 -12.96604 -12.89289 -12.47561 -12.35515 -12.17256 -12.10971 -12.00776 -11.61881 -10.94755 -10.32926 -10.20674 -9.66333 -9.42827 -8.31627 -5.91961 0.66149 1.26705 1.42986 1.47842 1.49313 1.57164 2.31363 2.58569 3.11004 3.23253 3.55654 3.70969 3.95744 3.96792 4.09982 4.17013 4.35439 4.56904 4.62069 4.66427 4.69505 4.72576 4.82019 4.83904 4.97078 5.02196 5.20364 5.24109 5.25856 5.33157 5.47392 5.55851 6.09407 6.16178 6.53756 6.67262 7.21276 7.51511 8.12098 8.72486 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.044659 B = 0.005445 C = 0.005072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.821548 B = 5140.969558 C = 5519.225293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.136 3.864 3 C -0.301 4.301 4 C 0.513 3.487 5 O -0.632 6.632 6 N -0.457 5.457 7 C 0.110 3.890 8 C -0.340 4.340 9 H 0.074 0.926 10 C -0.005 4.005 11 N -0.897 5.897 12 Si 0.993 3.007 13 H -0.265 1.265 14 H -0.275 1.275 15 H -0.274 1.274 16 C 0.053 3.947 17 N -0.311 5.311 18 N -0.351 5.351 19 C 0.137 3.863 20 C -0.155 4.155 21 C -0.154 4.154 22 H 0.091 0.909 23 H 0.078 0.922 24 H 0.103 0.897 25 H 0.045 0.955 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.274 0.726 29 H 0.209 0.791 30 H 0.128 0.872 31 H 0.054 0.946 32 H 0.109 0.891 33 H 0.050 0.950 34 H 0.108 0.892 35 H 0.055 0.945 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.106 -16.850 2.191 17.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.003 3.997 3 C -0.316 4.316 4 C 0.304 3.696 5 O -0.521 6.521 6 N -0.174 5.174 7 C -0.033 4.033 8 C -0.468 4.468 9 H 0.092 0.908 10 C -0.206 4.206 11 N -0.536 5.536 12 Si 0.816 3.184 13 H -0.190 1.190 14 H -0.200 1.200 15 H -0.199 1.199 16 C -0.132 4.132 17 N -0.131 5.131 18 N -0.132 5.132 19 C 0.038 3.962 20 C -0.213 4.213 21 C -0.211 4.211 22 H 0.110 0.890 23 H 0.097 0.903 24 H 0.122 0.878 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.226 0.774 30 H 0.145 0.855 31 H 0.074 0.926 32 H 0.127 0.873 33 H 0.070 0.930 34 H 0.127 0.873 35 H 0.074 0.926 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.763 -17.821 2.017 18.022 hybrid contribution -0.257 2.067 0.011 2.083 sum -2.020 -15.754 2.028 16.012 Atomic orbital electron populations 1.20641 0.84903 1.04939 1.04418 1.21728 0.95790 0.86143 0.96081 1.20218 0.94134 0.93404 1.23802 1.17670 0.85748 0.84825 0.81373 1.90474 1.21013 1.84437 1.56202 1.43570 1.08802 1.06035 1.58982 1.21972 0.81881 0.99275 1.00179 1.19657 0.95781 0.82116 1.49256 0.90824 1.26125 0.95572 1.03447 0.95464 1.70089 1.07404 1.34602 1.41462 0.84933 0.78316 0.76657 0.78510 1.18976 1.19982 1.19868 1.25021 0.98089 0.92091 0.98001 1.76950 0.97611 1.12626 1.25903 1.48967 1.03137 1.06538 1.54578 1.21894 1.01039 0.74708 0.98567 1.22110 1.01982 1.01911 0.95258 1.22096 1.01973 1.01851 0.95196 0.89016 0.90294 0.87816 0.93617 0.92105 0.91009 0.91675 0.77449 0.85470 0.92638 0.87277 0.93043 0.87339 0.92616 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.65 9.58 71.24 0.68 -1.97 16 2 C 0.14 4.84 7.00 42.15 0.30 5.14 16 3 C -0.30 -13.20 5.90 -20.15 -0.12 -13.32 16 4 C 0.51 27.66 7.59 86.64 0.66 28.32 16 5 O -0.63 -37.40 14.63 -4.13 -0.06 -37.46 16 6 N -0.46 -25.29 3.01 -662.69 -2.00 -27.29 16 7 C 0.11 5.18 7.10 127.77 0.91 6.09 16 8 C -0.34 -20.12 9.24 84.07 0.78 -19.35 16 9 H 0.07 4.60 7.47 -2.91 -0.02 4.58 16 10 C 0.00 -0.25 5.00 84.93 0.42 0.18 16 11 N -0.90 -49.07 10.86 21.67 0.24 -48.83 16 12 Si 0.99 43.40 29.58 68.60 2.03 45.43 16 13 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 14 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 15 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 16 C 0.05 2.07 9.81 85.66 0.84 2.91 16 17 N -0.31 -10.85 12.33 -56.26 -0.69 -11.55 16 18 N -0.35 -10.62 3.25 -312.55 -1.02 -11.63 16 19 C 0.14 2.64 3.62 44.99 0.16 2.80 16 20 C -0.15 -2.60 9.44 71.98 0.68 -1.92 16 21 C -0.15 -2.50 9.45 71.98 0.68 -1.82 16 22 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 23 H 0.08 2.90 6.33 -2.38 -0.02 2.89 16 24 H 0.10 2.06 7.07 -2.39 -0.02 2.05 16 25 H 0.05 2.17 7.46 -2.39 -0.02 2.16 16 26 H 0.06 3.00 6.61 -2.38 -0.02 2.99 16 27 H 0.07 2.92 4.75 -2.39 -0.01 2.91 16 28 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 29 H 0.21 7.58 4.74 -2.91 -0.01 7.56 16 30 H 0.13 1.78 6.63 -2.38 -0.02 1.76 16 31 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.05 0.96 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -73.77 295.06 5.57 -68.20 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 1.09 Total: 16.07 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 5.99 Total: 7.06 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -3.47 Total: -99.30 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -0.06 Total: -37.46 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -73.77 5.57 -68.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334445085.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.321 kcal (2) G-P(sol) polarization free energy of solvation -73.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds