Wall clock time and date at job start Sun Mar 29 2020 23:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34128 * 125.98868 * 2 1 4 4 C 1.30500 * 109.25368 * 180.02562 * 3 2 1 5 5 N 1.35045 * 108.70198 * 359.76497 * 4 3 2 6 6 H 0.97000 * 126.39650 * 180.26859 * 5 4 3 7 7 C 1.34678 * 125.99152 * 179.97438 * 2 1 3 8 8 C 1.50699 * 126.58763 * 359.96644 * 7 2 1 9 9 C 1.50700 * 109.47216 * 84.99836 * 8 7 2 10 10 O 1.21278 * 119.99967 * 359.97438 * 9 8 7 11 11 N 1.34781 * 119.99877 * 180.02562 * 9 8 7 12 12 C 1.46496 * 119.99828 * 359.97438 * 11 9 8 13 13 C 1.46498 * 119.99796 * 180.02562 * 11 9 8 14 14 H 1.08998 * 109.47277 * 359.97438 * 13 11 9 15 15 C 1.53000 * 109.46990 * 239.99615 * 13 11 9 16 16 C 1.50695 * 109.46959 * 119.99862 * 13 11 9 17 17 H 1.08001 * 120.00332 * 5.36009 * 16 13 11 18 18 C 1.37876 * 119.99845 * 185.35230 * 16 13 11 19 19 N 1.31518 * 120.00343 * 5.15650 * 18 16 13 20 20 Si 1.86807 * 120.00265 * 185.15475 * 18 16 13 21 21 H 1.48494 * 109.47145 * 84.99953 * 20 18 16 22 22 H 1.48497 * 109.47300 * 205.00262 * 20 18 16 23 23 H 1.48503 * 109.46685 * 325.00509 * 20 18 16 24 24 H 1.08997 * 109.47049 * 270.00015 * 1 2 3 25 25 H 1.08995 * 109.47381 * 29.99889 * 1 2 3 26 26 H 1.09001 * 109.47085 * 150.00078 * 1 2 3 27 27 H 1.08005 * 125.65003 * 180.02562 * 4 3 2 28 28 H 1.09004 * 109.46898 * 324.99803 * 8 7 2 29 29 H 1.09000 * 109.46838 * 204.99752 * 8 7 2 30 30 H 1.09003 * 109.47331 * 270.00278 * 12 11 9 31 31 H 1.08997 * 109.47665 * 29.99893 * 12 11 9 32 32 H 1.08999 * 109.47275 * 150.00325 * 12 11 9 33 33 H 1.09004 * 109.47222 * 54.89061 * 15 13 11 34 34 H 1.09001 * 109.47231 * 174.89169 * 15 13 11 35 35 H 1.09003 * 109.47391 * 294.89733 * 15 13 11 36 36 H 0.96999 * 120.00186 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2951 1.0853 0.0000 4 6 3.5449 0.7095 -0.0006 5 7 3.5912 -0.6401 0.0043 6 1 4.3913 -1.1886 0.0088 7 6 2.2984 -1.0897 0.0005 8 6 1.8472 -2.5276 0.0018 9 6 1.5780 -2.9709 -1.4131 10 8 1.7364 -2.1955 -2.3320 11 7 1.1602 -4.2289 -1.6571 12 6 0.9683 -5.1653 -0.5470 13 6 0.8989 -4.6600 -3.0327 14 1 1.0958 -3.8339 -3.7160 15 6 -0.5631 -5.0916 -3.1629 16 6 1.7976 -5.8203 -3.3746 17 1 2.4313 -6.2546 -2.6154 18 6 1.8107 -6.3277 -4.6565 19 7 1.1169 -5.7368 -5.6048 20 14 2.8141 -7.8544 -5.0467 21 1 2.0165 -9.0657 -4.7280 22 1 3.1671 -7.8595 -6.4891 23 1 4.0563 -7.8515 -4.2329 24 1 -0.3633 0.0000 1.0276 25 1 -0.3634 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 4.4004 1.3687 -0.0003 28 1 0.9355 -2.6217 0.5918 29 1 2.6274 -3.1527 0.4362 30 1 1.8974 -5.7044 -0.3617 31 1 0.6838 -4.6135 0.3489 32 1 0.1812 -5.8748 -0.8020 33 1 -1.2121 -4.2820 -2.8288 34 1 -0.7814 -5.3259 -4.2048 35 1 -0.7376 -5.9744 -2.5476 36 1 1.1265 -6.0936 -6.5067 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346302436.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:35 Heat of formation + Delta-G solvation = 15.811407 kcal Electronic energy + Delta-G solvation = -18666.372611 eV Core-core repulsion = 15765.496414 eV Total energy + Delta-G solvation = -2900.876197 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.92385 -38.97279 -35.35240 -33.03397 -32.92416 -32.25485 -29.79129 -28.29103 -26.17949 -25.58458 -25.17232 -21.81632 -21.13551 -19.48605 -18.42349 -17.44153 -16.70825 -16.17458 -15.35164 -15.14513 -14.68792 -14.20396 -14.16923 -13.17730 -12.81373 -12.70646 -12.62128 -12.55217 -12.51089 -11.91798 -11.85162 -11.64788 -11.49975 -11.04638 -10.89175 -10.76236 -10.28768 -10.21723 -9.80304 -9.68811 -9.22446 -8.98352 -8.44859 -7.98406 -7.62325 -6.10272 -4.16779 2.18021 3.24131 3.24834 3.28648 3.31066 3.32374 3.38031 4.01075 4.38023 4.70048 4.93726 5.13325 5.20474 5.28702 5.43103 5.47841 5.53890 5.73123 5.89319 6.00363 6.16150 6.18549 6.24205 6.38306 6.70513 6.73501 6.94752 6.99022 7.35631 7.50444 7.55172 7.68101 7.91855 8.14913 8.24276 8.50033 8.82814 9.04022 9.49232 10.96999 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.032783 B = 0.005407 C = 0.005203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.884644 B = 5177.620149 C = 5380.021087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.013 3.987 3 N -0.493 5.493 4 C 0.180 3.820 5 N -0.563 5.563 6 H 0.417 0.583 7 C 0.006 3.994 8 C -0.067 4.067 9 C 0.502 3.498 10 O -0.539 6.539 11 N -0.594 5.594 12 C 0.085 3.915 13 C 0.256 3.744 14 H 0.068 0.932 15 C -0.141 4.141 16 C -0.528 4.528 17 H 0.058 0.942 18 C 0.066 3.934 19 N -0.886 5.886 20 Si 0.897 3.103 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.276 1.276 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.205 0.795 28 H 0.109 0.891 29 H 0.093 0.907 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.015 0.985 34 H 0.077 0.923 35 H 0.033 0.967 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.725 4.619 13.638 14.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.116 4.116 3 N -0.214 5.214 4 C -0.103 4.103 5 N -0.166 5.166 6 H 0.255 0.745 7 C -0.110 4.110 8 C -0.108 4.108 9 C 0.288 3.712 10 O -0.417 6.417 11 N -0.326 5.326 12 C -0.059 4.059 13 C 0.156 3.844 14 H 0.086 0.914 15 C -0.199 4.199 16 C -0.567 4.567 17 H 0.076 0.924 18 C -0.137 4.137 19 N -0.523 5.523 20 Si 0.724 3.276 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.201 1.201 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.222 0.778 28 H 0.127 0.873 29 H 0.111 0.889 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.034 0.966 34 H 0.096 0.904 35 H 0.052 0.948 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.428 5.836 12.924 14.252 hybrid contribution 1.435 -2.107 -0.295 2.566 sum 2.862 3.729 12.629 13.476 Atomic orbital electron populations 1.20005 0.87982 1.02962 1.01433 1.20364 0.96297 0.87791 1.07121 1.70116 1.00575 1.30774 1.19885 1.24768 0.97278 0.81918 1.06370 1.43105 1.08039 1.08646 1.56782 0.74546 1.20321 0.83927 0.95754 1.10977 1.20152 1.03124 0.90250 0.97318 1.20213 0.78481 0.82549 0.90001 1.90697 1.52287 1.52783 1.45898 1.48235 1.64593 1.10018 1.09766 1.21581 1.01648 0.93983 0.88721 1.18944 0.92321 0.96503 0.76588 0.91405 1.22024 0.97338 0.97793 1.02786 1.21269 1.24123 1.15582 0.95718 0.92372 1.24910 0.95615 0.97244 0.95947 1.69941 1.41307 1.39293 1.01800 0.86544 0.80328 0.83183 0.77520 1.20477 1.21156 1.20087 0.91822 0.91256 0.91376 0.77829 0.87263 0.88886 0.93363 0.92883 0.90801 0.96559 0.90380 0.94782 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 10.13 36.00 0.36 -0.57 16 2 C 0.01 0.22 7.09 -82.85 -0.59 -0.37 16 3 N -0.49 -8.18 11.25 -10.87 -0.12 -8.30 16 4 C 0.18 2.37 13.04 -90.37 -1.18 1.19 16 5 N -0.56 -7.31 6.15 -10.30 -0.06 -7.37 16 6 H 0.42 4.10 8.96 -40.82 -0.37 3.74 16 7 C 0.01 0.09 5.73 -81.60 -0.47 -0.37 16 8 C -0.07 -0.95 4.36 -29.04 -0.13 -1.08 16 9 C 0.50 10.04 7.67 -10.98 -0.08 9.96 16 10 O -0.54 -13.39 15.36 5.56 0.09 -13.30 16 11 N -0.59 -12.17 2.75 -175.27 -0.48 -12.65 16 12 C 0.08 1.31 9.43 59.84 0.56 1.88 16 13 C 0.26 6.46 2.51 -69.09 -0.17 6.28 16 14 H 0.07 2.02 6.88 -51.93 -0.36 1.67 16 15 C -0.14 -3.27 8.84 37.16 0.33 -2.94 16 16 C -0.53 -14.10 8.34 -34.44 -0.29 -14.39 16 17 H 0.06 1.52 7.51 -52.49 -0.39 1.12 16 18 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 19 N -0.89 -25.29 11.99 55.43 0.66 -24.63 16 20 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.07 1.00 7.89 -51.93 -0.41 0.59 16 27 H 0.21 1.73 8.06 -52.48 -0.42 1.31 16 28 H 0.11 1.28 7.29 -51.93 -0.38 0.90 16 29 H 0.09 1.09 8.11 -51.93 -0.42 0.67 16 30 H 0.05 0.72 8.09 -51.93 -0.42 0.30 16 31 H 0.05 0.61 6.44 -51.93 -0.33 0.28 16 32 H 0.07 1.16 6.54 -51.93 -0.34 0.82 16 33 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 1.99 6.84 -51.93 -0.36 1.64 16 35 H 0.03 0.72 6.88 -51.93 -0.36 0.36 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 303.03 15.07 4.57 4.57 Total: -1.00 -34.66 303.03 -7.07 -41.73 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -4.96 Total: 2.84 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -1.74 Total: 1.27 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: 0.00 Total: -52.95 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.09 Total: -13.30 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.66 -7.07 -41.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346302436.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.544 kcal (2) G-P(sol) polarization free energy of solvation -34.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds