Wall clock time and date at job start Mon Mar 30 2020 00:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.52997 * 109.47441 * 239.99532 * 2 1 3 5 5 C 1.50703 * 109.46940 * 59.99972 * 4 2 1 6 6 H 1.08001 * 120.00043 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00213 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00298 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99907 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47136 * 89.99860 * 9 7 5 11 11 H 1.48503 * 109.47098 * 209.99926 * 9 7 5 12 12 H 1.48504 * 109.46915 * 329.99781 * 9 7 5 13 13 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 14 14 N 1.46499 * 109.47198 * 299.99984 * 13 2 1 15 15 C 1.34777 * 119.99665 * 180.27868 * 14 13 2 16 16 O 1.21683 * 120.00206 * 359.72112 * 15 14 13 17 17 C 1.46761 * 119.99760 * 179.72436 * 15 14 13 18 18 C 1.36666 * 126.84572 * 179.68409 * 17 15 14 19 19 N 1.33320 * 107.78676 * 179.89788 * 18 17 15 20 20 C 1.30860 * 109.68311 * 0.37381 * 19 18 17 21 21 N 1.34486 * 109.16735 * 359.76712 * 20 19 18 22 22 H 0.97001 * 126.47500 * 179.97438 * 21 20 19 23 23 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 24 24 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 25 25 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 28 28 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 29 29 H 1.08995 * 109.47672 * 179.97438 * 4 2 1 30 30 H 1.09007 * 109.47288 * 300.00670 * 4 2 1 31 31 H 0.96997 * 120.00401 * 179.97438 * 8 7 5 32 32 H 1.09009 * 109.46730 * 179.97438 * 13 2 1 33 33 H 1.08998 * 109.46846 * 60.00315 * 13 2 1 34 34 H 0.97001 * 119.99790 * 359.97438 * 14 13 2 35 35 H 1.07993 * 126.10807 * 359.97438 * 18 17 15 36 36 H 1.08001 * 125.41564 * 179.74571 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4797 6 1 0.9171 0.8673 -2.3807 7 6 1.8704 -0.4824 -3.7319 8 7 1.4324 0.1378 -4.8058 9 14 2.9432 -2.0020 -3.9032 10 1 2.0837 -3.2121 -3.9485 11 1 3.7351 -1.9101 -5.1561 12 1 3.8636 -2.0916 -2.7413 13 6 2.0399 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4454 15 6 1.8818 -0.4877 3.6695 16 8 2.5814 -1.4771 3.7813 17 6 1.3976 0.2077 4.8678 18 6 1.6400 -0.1349 6.1684 19 7 1.0220 0.7545 6.9459 20 6 0.3983 1.6320 6.2020 21 7 0.6009 1.3358 4.9059 22 1 0.2531 1.8221 4.1420 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.1301 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 3.1300 -0.7209 -1.2494 30 1 1.6766 -1.7490 -1.2492 31 1 1.6668 -0.1936 -5.6868 32 1 3.1300 -0.7216 1.2491 33 1 1.6766 -1.7488 1.2493 34 1 0.9942 0.7584 2.3564 35 1 2.2282 -0.9753 6.5061 36 1 -0.1865 2.4620 6.5703 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359760630.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:08:18 Heat of formation + Delta-G solvation = 5.394291 kcal Electronic energy + Delta-G solvation = -18222.703291 eV Core-core repulsion = 15321.375374 eV Total energy + Delta-G solvation = -2901.327917 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.37571 -39.47873 -37.28542 -33.99745 -32.84574 -32.10455 -30.11337 -27.91449 -26.68994 -26.49931 -23.62284 -22.34871 -21.43645 -20.61342 -19.52752 -17.98131 -16.95086 -16.33791 -15.77003 -15.70139 -14.76841 -14.48228 -14.24902 -13.86680 -13.74891 -13.70530 -13.53597 -12.84843 -12.43469 -12.33507 -11.35041 -11.24869 -11.09064 -10.70605 -10.65402 -10.59723 -10.45964 -10.18936 -10.07505 -9.81015 -9.58590 -9.12776 -9.07710 -8.78969 -8.59189 -6.10036 -4.07993 1.12280 2.62009 2.65078 3.16005 3.26385 3.27701 3.36111 3.39597 4.30532 4.40638 4.64745 4.94846 5.20352 5.21917 5.28229 5.41115 5.49514 5.51645 5.95919 5.97910 6.06088 6.17701 6.26645 6.31570 6.47464 6.53022 6.77480 6.88704 6.90594 6.93970 7.11245 7.27978 7.39471 7.65371 7.72027 8.10936 8.45866 8.93013 9.52455 11.02571 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.046232 B = 0.004409 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.492190 B = 6349.147241 C = 6758.260409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.064 4.064 3 C -0.129 4.129 4 C -0.002 4.002 5 C -0.513 4.513 6 H 0.078 0.922 7 C 0.068 3.932 8 N -0.903 5.903 9 Si 0.875 3.125 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.265 1.265 13 C 0.125 3.875 14 N -0.719 5.719 15 C 0.588 3.412 16 O -0.529 6.529 17 C -0.084 4.084 18 C 0.065 3.935 19 N -0.502 5.502 20 C 0.213 3.787 21 N -0.555 5.555 22 H 0.423 0.577 23 H 0.027 0.973 24 H 0.074 0.926 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.027 0.973 29 H 0.019 0.981 30 H 0.015 0.985 31 H 0.263 0.737 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.393 0.607 35 H 0.183 0.817 36 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.910 4.167 17.300 18.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.064 4.064 3 C -0.186 4.186 4 C -0.040 4.040 5 C -0.551 4.551 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.542 5.542 9 Si 0.702 3.298 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.190 1.190 13 C 0.003 3.997 14 N -0.370 5.370 15 C 0.373 3.627 16 O -0.405 6.405 17 C -0.200 4.200 18 C -0.089 4.089 19 N -0.221 5.221 20 C -0.071 4.071 21 N -0.160 5.160 22 H 0.262 0.738 23 H 0.046 0.954 24 H 0.093 0.907 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.093 0.907 28 H 0.046 0.954 29 H 0.037 0.963 30 H 0.033 0.967 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.228 0.772 35 H 0.200 0.800 36 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -2.360 3.401 18.003 18.473 hybrid contribution 0.028 -0.084 -1.584 1.586 sum -2.332 3.317 16.419 16.913 Atomic orbital electron populations 1.21782 0.94792 1.01399 1.00621 1.20713 0.95807 0.95923 0.93969 1.21780 1.00635 0.95548 1.00617 1.19590 0.96375 0.95530 0.92460 1.21055 1.32051 1.13398 0.88621 0.90443 1.24994 0.95648 0.96762 0.95959 1.69895 1.45823 1.40547 0.97924 0.86857 0.81318 0.83867 0.77727 1.20322 1.21449 1.18963 1.21723 0.99186 0.96158 0.82662 1.46077 1.53129 1.31883 1.05877 1.16892 0.80409 0.83757 0.81626 1.90856 1.37982 1.25516 1.86142 1.21373 1.06619 0.94509 0.97503 1.22660 0.99742 0.99195 0.87282 1.70247 1.12879 1.05135 1.33803 1.25193 1.01650 1.01156 0.79114 1.43441 1.39242 1.23147 1.10139 0.73817 0.95392 0.90704 0.93221 0.93214 0.90704 0.95389 0.96252 0.96699 0.92726 0.91382 0.91383 0.77204 0.79968 0.76873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 8.05 37.16 0.30 -1.78 16 2 C -0.06 -1.10 0.54 -154.51 -0.08 -1.18 16 3 C -0.13 -2.08 8.05 37.16 0.30 -1.78 16 4 C 0.00 -0.04 3.11 -27.88 -0.09 -0.12 16 5 C -0.51 -13.35 8.20 -34.44 -0.28 -13.63 16 6 H 0.08 2.13 5.92 -52.49 -0.31 1.81 16 7 C 0.07 1.87 5.47 -17.82 -0.10 1.78 16 8 N -0.90 -26.70 13.96 55.43 0.77 -25.93 16 9 Si 0.87 21.09 27.47 -169.99 -4.67 16.42 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 13 C 0.13 1.98 4.56 -4.04 -0.02 1.96 16 14 N -0.72 -9.32 4.95 -61.59 -0.31 -9.63 16 15 C 0.59 8.35 7.79 -12.82 -0.10 8.25 16 16 O -0.53 -9.44 16.90 5.20 0.09 -9.35 16 17 C -0.08 -0.98 7.08 -82.14 -0.58 -1.56 16 18 C 0.06 0.78 11.66 -17.47 -0.20 0.58 16 19 N -0.50 -5.71 11.20 -14.43 -0.16 -5.88 16 20 C 0.21 1.65 13.01 -90.58 -1.18 0.47 16 21 N -0.55 -4.34 6.07 -10.79 -0.07 -4.40 16 22 H 0.42 2.02 8.32 -40.82 -0.34 1.69 16 23 H 0.03 0.35 6.86 -51.93 -0.36 -0.01 16 24 H 0.07 1.37 6.62 -51.93 -0.34 1.03 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.07 1.37 6.62 -51.93 -0.34 1.03 16 28 H 0.03 0.35 6.86 -51.93 -0.36 -0.01 16 29 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 30 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.07 1.14 8.14 -51.92 -0.42 0.71 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.39 4.09 5.41 -40.82 -0.22 3.87 16 35 H 0.18 2.06 8.06 -52.49 -0.42 1.64 16 36 H 0.21 0.67 8.06 -52.49 -0.42 0.25 16 LS Contribution 297.19 15.07 4.48 4.48 Total: -1.00 -32.75 297.19 -6.64 -39.38 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -4.74 Total: 1.92 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -2.03 Total: -7.01 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: 0.24 Total: -45.84 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.35 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.75 -6.64 -39.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359760630.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.775 kcal (2) G-P(sol) polarization free energy of solvation -32.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds