Wall clock time and date at job start Mon Mar 30 2020 00:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47415 * 2 1 4 4 C 1.52996 * 109.46972 * 239.99860 * 2 1 3 5 5 C 1.50703 * 109.47130 * 60.00278 * 4 2 1 6 6 H 1.07994 * 120.00100 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99709 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99896 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99699 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47454 * 60.00119 * 9 7 5 11 11 H 1.48496 * 109.47302 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46926 * 299.99910 * 9 7 5 13 13 C 1.52997 * 109.46817 * 120.00127 * 2 1 3 14 14 N 1.46506 * 109.47289 * 299.99814 * 13 2 1 15 15 C 1.34774 * 120.00072 * 180.02562 * 14 13 2 16 16 O 1.21571 * 120.00410 * 0.02562 * 15 14 13 17 17 C 1.47706 * 119.99728 * 180.02562 * 15 14 13 18 18 C 1.41504 * 126.51714 * 179.71446 * 17 15 14 19 19 C 1.35366 * 105.50294 * 179.90221 * 18 17 15 20 20 N 1.35037 * 107.22951 * 0.35431 * 19 18 17 21 21 H 0.96997 * 124.88284 * 179.76189 * 20 19 18 22 22 N 1.28464 * 110.22937 * 359.76676 * 20 19 18 23 23 H 1.09002 * 109.47070 * 300.00053 * 1 2 3 24 24 H 1.09000 * 109.46986 * 59.99882 * 1 2 3 25 25 H 1.08996 * 109.47407 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47624 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47140 * 300.00024 * 3 2 1 28 28 H 1.09002 * 109.46777 * 59.99451 * 3 2 1 29 29 H 1.09001 * 109.46997 * 180.02562 * 4 2 1 30 30 H 1.09004 * 109.47298 * 300.00176 * 4 2 1 31 31 H 0.97007 * 119.99539 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47289 * 179.97438 * 13 2 1 33 33 H 1.09004 * 109.47261 * 59.99941 * 13 2 1 34 34 H 0.97001 * 119.99251 * 0.02562 * 14 13 2 35 35 H 1.08004 * 127.24969 * 0.02562 * 18 17 15 36 36 H 1.08001 * 126.38550 * 180.15427 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9172 0.8675 -2.3806 7 6 1.8712 -0.4817 -3.7320 8 7 2.6272 -1.5510 -3.8525 9 14 1.2492 0.3993 -5.2572 10 1 1.7443 1.7994 -5.2568 11 1 1.7440 -0.3008 -6.4697 12 1 -0.2358 0.3994 -5.2577 13 6 2.0399 -0.7213 1.2492 14 7 1.5516 -0.0307 2.4455 15 6 1.8776 -0.4909 3.6695 16 8 2.5772 -1.4788 3.7812 17 6 1.3847 0.2051 4.8755 18 6 1.6358 -0.1591 6.2196 19 6 0.9889 0.7625 6.9711 20 7 0.3828 1.6182 6.1204 21 1 -0.1563 2.3786 6.3888 22 7 0.6227 1.2803 4.9044 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1301 1.4425 0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 -0.7217 -1.2490 30 1 1.6766 -1.7490 -1.2492 31 1 2.8616 -1.8824 -4.7336 32 1 3.1299 -0.7217 1.2491 33 1 1.6766 -1.7490 1.2492 34 1 0.9937 0.7578 2.3564 35 1 2.2220 -0.9950 6.5719 36 1 0.9600 0.8035 8.0499 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359769544.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:08:15 Heat of formation + Delta-G solvation = 19.810102 kcal Electronic energy + Delta-G solvation = -18127.020113 eV Core-core repulsion = 15226.317312 eV Total energy + Delta-G solvation = -2900.702801 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.75790 -39.25256 -36.98667 -33.57871 -32.24405 -31.75923 -30.82071 -27.13826 -26.44366 -26.41665 -23.91771 -22.45631 -21.76353 -19.90726 -18.83319 -18.11224 -16.79550 -16.27088 -15.86086 -15.31411 -14.69402 -14.47637 -14.03085 -13.82470 -13.43503 -13.17446 -13.03065 -12.66626 -12.08361 -12.01486 -11.12886 -11.10311 -10.95672 -10.83722 -10.57790 -10.35356 -10.22394 -9.99933 -9.82017 -9.59161 -9.39070 -9.13640 -8.89399 -8.64372 -8.32055 -5.96326 -3.97387 1.52509 2.00166 2.67832 3.34758 3.39922 3.41020 3.50506 3.56053 4.41997 4.48661 4.64941 5.14732 5.39140 5.46303 5.56312 5.62241 5.68562 5.82265 6.18588 6.25321 6.29925 6.35067 6.46067 6.62168 6.69236 6.74770 6.83398 7.11790 7.12985 7.18015 7.57523 7.68315 7.81140 7.90133 8.02711 8.43288 8.47597 9.07196 9.65396 11.15167 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.050364 B = 0.004130 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.815417 B = 6778.684868 C = 7138.134728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.072 4.072 3 C -0.128 4.128 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.127 3.873 14 N -0.706 5.706 15 C 0.594 3.406 16 O -0.538 6.538 17 C -0.007 4.007 18 C -0.181 4.181 19 C -0.019 4.019 20 N -0.386 5.386 21 H 0.445 0.555 22 N -0.261 5.261 23 H 0.030 0.970 24 H 0.067 0.933 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.067 0.933 28 H 0.030 0.970 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.260 0.740 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.405 0.595 35 H 0.163 0.837 36 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.000 7.054 20.086 21.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.001 4.001 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.004 3.996 14 N -0.358 5.358 15 C 0.377 3.623 16 O -0.413 6.413 17 C -0.168 4.168 18 C -0.209 4.209 19 C -0.164 4.164 20 N -0.100 5.100 21 H 0.289 0.711 22 N -0.097 5.097 23 H 0.049 0.951 24 H 0.086 0.914 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.049 0.951 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.241 0.759 35 H 0.180 0.820 36 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -4.914 6.932 19.286 21.075 hybrid contribution -0.457 0.647 -0.177 0.812 sum -5.371 7.579 19.109 21.247 Atomic orbital electron populations 1.21769 0.95262 1.01187 1.00309 1.20906 0.95525 0.95889 0.94964 1.21768 1.00537 0.95908 1.00310 1.19089 0.96375 0.95230 0.89417 1.21159 1.31184 1.12058 0.90540 0.92301 1.25009 0.95332 0.95093 0.99044 1.69958 1.36943 1.23031 1.23507 0.86711 0.79132 0.79766 0.82681 1.20342 1.21421 1.20347 1.21702 0.99080 0.96110 0.82716 1.46083 1.52449 1.31887 1.05337 1.16925 0.80226 0.83355 0.81758 1.90791 1.38301 1.25870 1.86386 1.22181 1.02822 0.96262 0.95561 1.21842 1.05369 1.02586 0.91085 1.22937 1.01216 0.94087 0.98117 1.43366 1.38933 1.24583 1.03086 0.71066 1.73572 1.17137 1.15480 1.03528 0.95115 0.91447 0.93343 0.93346 0.91442 0.95121 0.96290 0.96289 0.93007 0.91529 0.91535 0.75911 0.81954 0.79874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.05 37.16 0.30 -2.05 16 2 C -0.07 -1.43 0.54 -154.51 -0.08 -1.51 16 3 C -0.13 -2.35 8.05 37.16 0.30 -2.05 16 4 C 0.04 0.91 4.04 -27.88 -0.11 0.79 16 5 C -0.51 -13.74 7.65 -34.44 -0.26 -14.01 16 6 H 0.06 1.52 5.68 -52.49 -0.30 1.22 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 9 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.13 2.35 4.56 -4.04 -0.02 2.33 16 14 N -0.71 -11.55 4.96 -61.29 -0.30 -11.86 16 15 C 0.59 10.08 7.82 -12.39 -0.10 9.98 16 16 O -0.54 -10.74 16.93 5.30 0.09 -10.65 16 17 C -0.01 -0.09 7.13 -82.76 -0.59 -0.68 16 18 C -0.18 -2.01 10.81 -39.36 -0.43 -2.44 16 19 C -0.02 -0.14 12.02 -17.17 -0.21 -0.35 16 20 N -0.39 -3.01 6.83 30.47 0.21 -2.81 16 21 H 0.45 1.66 8.96 -190.45 -1.71 -0.05 16 22 N -0.26 -3.13 11.92 33.42 0.40 -2.74 16 23 H 0.03 0.48 6.86 -51.93 -0.36 0.12 16 24 H 0.07 1.31 6.62 -51.93 -0.34 0.97 16 25 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 1.31 6.62 -51.93 -0.34 0.97 16 28 H 0.03 0.48 6.86 -51.93 -0.36 0.12 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.40 6.05 5.89 -40.82 -0.24 5.81 16 35 H 0.16 1.67 8.06 -52.48 -0.42 1.25 16 36 H 0.18 0.54 8.06 -52.49 -0.42 0.12 16 LS Contribution 301.68 15.07 4.55 4.55 Total: -1.00 -33.19 301.68 -6.80 -39.99 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.16 Total: 1.57 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -1.30 Total: -8.51 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 1.04 Total: -43.32 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.19 -6.80 -39.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359769544.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.803 kcal (2) G-P(sol) polarization free energy of solvation -33.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds