Wall clock time and date at job start Sun Mar 29 2020 23:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30503 * 125.64757 * 2 1 4 4 C 1.34132 * 109.25579 * 180.29064 * 3 2 1 5 5 C 1.34669 * 108.01768 * 359.73289 * 4 3 2 6 6 N 1.35042 * 125.65478 * 179.83106 * 2 1 3 7 7 C 1.46500 * 126.39313 * 359.97438 * 6 2 1 8 8 C 1.52997 * 109.47473 * 84.71557 * 7 6 2 9 9 N 1.46505 * 109.47212 * 179.97438 * 8 7 6 10 10 C 1.34771 * 119.99622 * 179.97438 * 9 8 7 11 11 O 1.21280 * 120.00597 * 0.02562 * 10 9 8 12 12 C 1.50701 * 119.99622 * 179.97438 * 10 9 8 13 13 C 1.52997 * 109.47212 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.47466 * 180.02562 * 13 12 10 15 15 H 1.08006 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00428 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99996 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00227 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46873 * 60.00019 * 18 16 14 20 20 H 1.48503 * 109.47134 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.46938 * 300.00027 * 18 16 14 22 22 H 1.09000 * 109.46880 * 270.17047 * 1 2 3 23 23 H 1.08998 * 109.47353 * 30.17154 * 1 2 3 24 24 H 1.08999 * 109.47119 * 150.17007 * 1 2 3 25 25 H 1.07998 * 125.98893 * 179.72468 * 4 3 2 26 26 H 1.07997 * 126.59117 * 179.97438 * 5 4 3 27 27 H 1.09002 * 109.47129 * 324.71300 * 7 6 2 28 28 H 1.08998 * 109.46845 * 204.72107 * 7 6 2 29 29 H 1.09002 * 109.47153 * 59.99757 * 8 7 6 30 30 H 1.09001 * 109.46832 * 299.99948 * 8 7 6 31 31 H 0.96996 * 119.99606 * 0.02562 * 9 8 7 32 32 H 1.09001 * 109.47380 * 300.00190 * 12 10 9 33 33 H 1.09002 * 109.47060 * 60.00278 * 12 10 9 34 34 H 1.09001 * 109.47289 * 299.99918 * 13 12 10 35 35 H 1.09002 * 109.47153 * 60.00002 * 13 12 10 36 36 H 0.96993 * 120.00405 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6820 -0.0064 5 6 3.5926 -0.6642 -0.0046 6 7 2.2941 -1.0973 0.0032 7 6 1.8426 -2.4909 0.0079 8 6 1.5585 -2.9398 -1.4269 9 7 1.1075 -4.3337 -1.4223 10 6 0.7967 -4.9452 -2.5824 11 8 0.8908 -4.3419 -3.6302 12 6 0.3334 -6.3793 -2.5776 13 6 0.0492 -6.8281 -4.0124 14 6 -0.4148 -8.2619 -4.0077 15 1 -0.4981 -8.7994 -3.0746 16 6 -0.7318 -8.8879 -5.1945 17 7 -0.6298 -8.2335 -6.3308 18 14 -1.3062 -10.6654 -5.1887 19 1 -2.5456 -10.7824 -4.3791 20 1 -1.5822 -11.1010 -6.5813 21 1 -0.2480 -11.5256 -4.6009 22 1 -0.3633 0.0031 1.0277 23 1 -0.3634 0.8884 -0.5165 24 1 -0.3633 -0.8915 -0.5112 25 1 4.4097 1.3412 -0.0122 26 1 4.4776 -1.2831 -0.0089 27 1 0.9328 -2.5761 0.6021 28 1 2.6188 -3.1229 0.4394 29 1 2.4683 -2.8547 -2.0212 30 1 0.7822 -2.3078 -1.8583 31 1 1.0319 -4.8162 -0.5842 32 1 1.1105 -7.0108 -2.1469 33 1 -0.5759 -6.4653 -1.9828 34 1 -0.7277 -6.1967 -4.4435 35 1 0.9587 -6.7421 -4.6069 36 1 -0.8525 -8.6740 -7.1658 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360138971.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:27:42 Heat of formation + Delta-G solvation = 8.565789 kcal Electronic energy + Delta-G solvation = -17441.868997 eV Core-core repulsion = 14540.678607 eV Total energy + Delta-G solvation = -2901.190391 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.32588 -39.30599 -35.93047 -33.52044 -33.48810 -31.96280 -31.11365 -28.99463 -27.06309 -25.76522 -23.62015 -21.61036 -21.57040 -20.27511 -19.54297 -17.38604 -16.89979 -16.23594 -15.82141 -15.57839 -15.14627 -14.76348 -14.45273 -14.17405 -13.75620 -13.32233 -13.22624 -13.05357 -12.58421 -12.54353 -12.36777 -12.20322 -11.76145 -11.23076 -10.94734 -10.66216 -10.18090 -10.02194 -9.90573 -9.74329 -9.28806 -9.11165 -9.02733 -8.55774 -8.36104 -6.00010 -4.05071 1.78110 2.35936 2.95329 3.11011 3.31373 3.36100 3.37511 3.48180 4.21056 4.27278 4.35545 4.43788 4.58529 4.76407 5.04541 5.17692 5.26042 5.34809 5.35073 5.40172 5.52304 5.64048 5.75012 6.05760 6.13396 6.14333 6.44412 6.55096 6.80261 6.93247 7.66762 7.69804 7.79827 7.89795 8.01997 8.32814 8.62705 9.03068 9.58754 11.10875 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.058914 B = 0.003122 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.153039 B = 8966.796367 C = 8977.356852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.208 3.792 3 N -0.493 5.493 4 C -0.029 4.029 5 C -0.057 4.057 6 N -0.453 5.453 7 C 0.095 3.905 8 C 0.106 3.894 9 N -0.744 5.744 10 C 0.511 3.489 11 O -0.529 6.529 12 C -0.128 4.128 13 C 0.037 3.963 14 C -0.530 4.530 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.889 5.889 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 H 0.080 0.920 23 H 0.091 0.909 24 H 0.075 0.925 25 H 0.170 0.830 26 H 0.175 0.825 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.399 0.601 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.024 0.976 35 H 0.023 0.977 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.301 12.192 16.875 21.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.054 4.054 3 N -0.213 5.213 4 C -0.176 4.176 5 C -0.189 4.189 6 N -0.137 5.137 7 C -0.029 4.029 8 C -0.020 4.020 9 N -0.400 5.400 10 C 0.300 3.700 11 O -0.404 6.404 12 C -0.168 4.168 13 C -0.001 4.001 14 C -0.568 4.568 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.722 3.278 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 H 0.098 0.902 23 H 0.110 0.890 24 H 0.094 0.906 25 H 0.187 0.813 26 H 0.192 0.808 27 H 0.117 0.883 28 H 0.118 0.882 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.233 0.767 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.025 13.285 15.884 21.308 hybrid contribution 0.182 -2.059 0.351 2.097 sum 5.206 11.226 16.235 20.413 Atomic orbital electron populations 1.20241 0.84903 1.04427 1.03494 1.23369 0.95793 0.81274 1.04953 1.70262 1.02336 1.28251 1.20410 1.22292 0.94797 0.92788 1.07741 1.22741 0.86971 0.96973 1.12207 1.45262 1.06683 1.06890 1.54867 1.22009 1.02614 0.79961 0.98316 1.21489 1.01271 0.84325 0.94878 1.46070 1.71251 1.12402 1.10319 1.21647 0.75716 0.90268 0.82404 1.90697 1.51402 1.67006 1.31247 1.21879 1.01200 0.88984 1.04780 1.18905 0.97994 0.95524 0.87682 1.21169 1.45535 0.97202 0.92879 0.92627 1.25031 0.95635 0.98073 0.95624 1.69983 1.48217 1.36820 0.97758 0.86639 0.79183 0.84985 0.77042 1.20230 1.21251 1.20239 0.90156 0.89008 0.90586 0.81301 0.80810 0.88263 0.88164 0.91066 0.91037 0.76739 0.90091 0.90059 0.95795 0.95817 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.04 36.00 0.36 -0.22 16 2 C 0.21 2.32 7.90 -155.41 -1.23 1.09 16 3 N -0.49 -6.47 11.25 -10.82 -0.12 -6.59 16 4 C -0.03 -0.31 11.87 -17.81 -0.21 -0.53 16 5 C -0.06 -0.54 11.58 -16.56 -0.19 -0.73 16 6 N -0.45 -4.40 2.75 -113.91 -0.31 -4.71 16 7 C 0.09 0.69 5.79 -4.04 -0.02 0.67 16 8 C 0.11 1.16 6.00 -4.04 -0.02 1.13 16 9 N -0.74 -8.93 5.56 -60.29 -0.33 -9.27 16 10 C 0.51 9.21 7.83 -10.99 -0.09 9.13 16 11 O -0.53 -12.16 15.98 5.56 0.09 -12.08 16 12 C -0.13 -2.46 5.64 -27.88 -0.16 -2.62 16 13 C 0.04 0.96 4.26 -27.89 -0.12 0.84 16 14 C -0.53 -14.75 9.11 -34.44 -0.31 -15.06 16 15 H 0.06 1.45 7.74 -52.48 -0.41 1.04 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -27.18 13.29 55.43 0.74 -26.45 16 18 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.08 0.55 7.34 -51.93 -0.38 0.17 16 25 H 0.17 1.43 8.06 -52.49 -0.42 1.01 16 26 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 27 H 0.10 0.55 7.94 -51.93 -0.41 0.13 16 28 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.89 7.64 -51.93 -0.40 0.50 16 31 H 0.40 3.30 8.47 -40.82 -0.35 2.96 16 32 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 313.75 15.07 4.73 4.73 Total: -1.00 -36.40 313.75 -7.63 -44.03 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -5.30 Total: -1.29 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -2.09 Total: -4.72 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: -0.03 Total: -47.01 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.09 Total: -12.08 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -36.40 -7.63 -44.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360138971.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.594 kcal (2) G-P(sol) polarization free energy of solvation -36.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds