Wall clock time and date at job start Sun Mar 29 2020 23:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30503 * 125.64757 * 2 1 4 4 C 1.34132 * 109.25579 * 180.29064 * 3 2 1 5 5 C 1.34669 * 108.01768 * 359.73289 * 4 3 2 6 6 N 1.35042 * 125.65478 * 179.83106 * 2 1 3 7 7 C 1.46500 * 126.39313 * 359.97438 * 6 2 1 8 8 C 1.52997 * 109.47473 * 84.71557 * 7 6 2 9 9 N 1.46505 * 109.47212 * 179.97438 * 8 7 6 10 10 C 1.34771 * 119.99622 * 179.97438 * 9 8 7 11 11 O 1.21280 * 120.00597 * 0.02562 * 10 9 8 12 12 C 1.50701 * 119.99622 * 179.97438 * 10 9 8 13 13 C 1.52997 * 109.47212 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.47466 * 180.02562 * 13 12 10 15 15 H 1.08006 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00428 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99996 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00227 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46873 * 60.00019 * 18 16 14 20 20 H 1.48503 * 109.47134 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.46938 * 300.00027 * 18 16 14 22 22 H 1.09000 * 109.46880 * 270.17047 * 1 2 3 23 23 H 1.08998 * 109.47353 * 30.17154 * 1 2 3 24 24 H 1.08999 * 109.47119 * 150.17007 * 1 2 3 25 25 H 1.07998 * 125.98893 * 179.72468 * 4 3 2 26 26 H 1.07997 * 126.59117 * 179.97438 * 5 4 3 27 27 H 1.09002 * 109.47129 * 324.71300 * 7 6 2 28 28 H 1.08998 * 109.46845 * 204.72107 * 7 6 2 29 29 H 1.09002 * 109.47153 * 59.99757 * 8 7 6 30 30 H 1.09001 * 109.46832 * 299.99948 * 8 7 6 31 31 H 0.96996 * 119.99606 * 0.02562 * 9 8 7 32 32 H 1.09001 * 109.47380 * 300.00190 * 12 10 9 33 33 H 1.09002 * 109.47060 * 60.00278 * 12 10 9 34 34 H 1.09001 * 109.47289 * 299.99918 * 13 12 10 35 35 H 1.09002 * 109.47153 * 60.00002 * 13 12 10 36 36 H 0.96993 * 120.00405 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6820 -0.0064 5 6 3.5926 -0.6642 -0.0046 6 7 2.2941 -1.0973 0.0032 7 6 1.8426 -2.4909 0.0079 8 6 1.5585 -2.9398 -1.4269 9 7 1.1075 -4.3337 -1.4223 10 6 0.7967 -4.9452 -2.5824 11 8 0.8908 -4.3419 -3.6302 12 6 0.3334 -6.3793 -2.5776 13 6 0.0492 -6.8281 -4.0124 14 6 -0.4148 -8.2619 -4.0077 15 1 -0.4981 -8.7994 -3.0746 16 6 -0.7318 -8.8879 -5.1945 17 7 -0.6298 -8.2335 -6.3308 18 14 -1.3062 -10.6654 -5.1887 19 1 -2.5456 -10.7824 -4.3791 20 1 -1.5822 -11.1010 -6.5813 21 1 -0.2480 -11.5256 -4.6009 22 1 -0.3633 0.0031 1.0277 23 1 -0.3634 0.8884 -0.5165 24 1 -0.3633 -0.8915 -0.5112 25 1 4.4097 1.3412 -0.0122 26 1 4.4776 -1.2831 -0.0089 27 1 0.9328 -2.5761 0.6021 28 1 2.6188 -3.1229 0.4394 29 1 2.4683 -2.8547 -2.0212 30 1 0.7822 -2.3078 -1.8583 31 1 1.0319 -4.8162 -0.5842 32 1 1.1105 -7.0108 -2.1469 33 1 -0.5759 -6.4653 -1.9828 34 1 -0.7277 -6.1967 -4.4435 35 1 0.9587 -6.7421 -4.6069 36 1 -0.8525 -8.6740 -7.1658 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360138971.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:27:41 Heat of formation + Delta-G solvation = -17.337455 kcal Electronic energy + Delta-G solvation = -17442.992246 eV Core-core repulsion = 14540.678607 eV Total energy + Delta-G solvation = -2902.313640 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.07564 -40.71985 -36.96390 -35.55446 -34.53180 -32.99340 -32.64314 -30.06099 -27.87711 -27.46011 -24.76178 -23.24302 -22.35920 -21.47858 -20.54716 -18.85703 -18.04475 -17.52029 -17.05076 -16.88535 -16.43516 -16.06694 -15.84083 -15.06531 -14.81754 -14.57466 -14.17005 -14.04475 -13.91076 -13.80305 -13.25785 -13.21952 -13.08347 -12.80158 -12.66390 -12.51010 -11.89838 -11.63967 -11.32305 -11.01280 -10.88179 -10.62101 -10.55989 -10.19946 -9.30723 -8.17588 -6.31811 1.02067 1.42955 1.47218 1.54880 1.60664 1.67467 2.15266 2.36828 2.48471 3.15621 3.58476 3.60518 3.64791 3.90847 4.06777 4.20116 4.33011 4.46518 4.51675 4.57853 4.65373 4.68826 4.72984 4.86435 5.04591 5.09960 5.32239 5.33212 5.51029 5.63877 5.82230 5.86150 6.17624 6.21736 6.55635 6.87312 7.12538 7.30962 7.38893 8.94885 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.058914 B = 0.003122 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.153039 B = 8966.796367 C = 8977.356852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.193 3.807 3 N -0.535 5.535 4 C -0.057 4.057 5 C -0.052 4.052 6 N -0.455 5.455 7 C 0.104 3.896 8 C 0.109 3.891 9 N -0.712 5.712 10 C 0.513 3.487 11 O -0.591 6.591 12 C -0.117 4.117 13 C 0.039 3.961 14 C -0.543 4.543 15 H 0.079 0.921 16 C -0.008 4.008 17 N -0.939 5.939 18 Si 0.974 3.026 19 H -0.261 1.261 20 H -0.290 1.290 21 H -0.262 1.262 22 H 0.099 0.901 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.183 0.817 26 H 0.204 0.796 27 H 0.126 0.874 28 H 0.130 0.870 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.423 0.577 32 H 0.109 0.891 33 H 0.110 0.890 34 H -0.019 1.019 35 H -0.020 1.020 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.251 10.436 19.821 23.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.069 4.069 3 N -0.255 5.255 4 C -0.203 4.203 5 C -0.184 4.184 6 N -0.139 5.139 7 C -0.019 4.019 8 C -0.016 4.016 9 N -0.367 5.367 10 C 0.301 3.699 11 O -0.470 6.470 12 C -0.157 4.157 13 C 0.002 3.998 14 C -0.581 4.581 15 H 0.097 0.903 16 C -0.206 4.206 17 N -0.579 5.579 18 Si 0.797 3.203 19 H -0.186 1.186 20 H -0.216 1.216 21 H -0.186 1.186 22 H 0.117 0.883 23 H 0.105 0.895 24 H 0.102 0.898 25 H 0.200 0.800 26 H 0.221 0.779 27 H 0.145 0.855 28 H 0.148 0.852 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.262 0.738 32 H 0.127 0.873 33 H 0.128 0.872 34 H -0.001 1.001 35 H -0.001 1.001 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.985 11.524 18.929 22.715 hybrid contribution 0.236 -1.438 -0.556 1.560 sum 5.222 10.086 18.373 21.600 Atomic orbital electron populations 1.20331 0.83271 1.04558 1.04743 1.23872 0.96914 0.81468 1.04693 1.70216 1.03574 1.29870 1.21868 1.22703 0.94754 0.94109 1.08756 1.23234 0.87821 0.96879 1.10503 1.45401 1.06607 1.07439 1.54412 1.22099 1.05006 0.79041 0.95747 1.21481 0.99740 0.82996 0.97400 1.45592 1.68782 1.12836 1.09524 1.21402 0.75492 0.89929 0.83041 1.90688 1.54356 1.68109 1.33842 1.21638 1.03568 0.90225 1.00272 1.18708 0.94534 0.94957 0.91629 1.21709 1.44684 0.97890 0.93803 0.90330 1.26154 0.95742 1.03494 0.95170 1.70173 1.49821 1.39265 0.98665 0.85377 0.79353 0.78491 0.77051 1.18602 1.21583 1.18626 0.88256 0.89538 0.89793 0.80007 0.77909 0.85549 0.85197 0.92992 0.92710 0.73844 0.87309 0.87207 1.00052 1.00120 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.05 10.04 71.24 0.72 -0.33 16 2 C 0.19 4.09 7.90 138.13 1.09 5.18 16 3 N -0.54 -13.96 11.25 -188.13 -2.12 -16.07 16 4 C -0.06 -1.22 11.87 83.52 0.99 -0.23 16 5 C -0.05 -0.90 11.58 83.09 0.96 0.07 16 6 N -0.46 -7.84 2.75 -514.30 -1.41 -9.26 16 7 C 0.10 1.14 5.79 86.38 0.50 1.64 16 8 C 0.11 2.18 6.00 86.38 0.52 2.70 16 9 N -0.71 -15.15 5.56 -463.06 -2.57 -17.72 16 10 C 0.51 18.10 7.83 87.66 0.69 18.79 16 11 O -0.59 -28.09 15.98 -3.03 -0.05 -28.14 16 12 C -0.12 -4.31 5.64 29.85 0.17 -4.15 16 13 C 0.04 2.13 4.26 29.85 0.13 2.26 16 14 C -0.54 -30.09 9.11 25.60 0.23 -29.85 16 15 H 0.08 3.90 7.74 -2.91 -0.02 3.87 16 16 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 17 N -0.94 -59.19 13.29 21.45 0.28 -58.90 16 18 Si 0.97 43.43 29.54 68.60 2.03 45.46 16 19 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 20 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 22 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.08 1.08 7.34 -2.39 -0.02 1.06 16 25 H 0.18 3.05 8.06 -2.91 -0.02 3.02 16 26 H 0.20 2.08 8.06 -2.91 -0.02 2.06 16 27 H 0.13 0.79 7.94 -2.39 -0.02 0.77 16 28 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.05 1.32 7.64 -2.39 -0.02 1.31 16 31 H 0.42 5.06 8.47 -92.71 -0.79 4.28 16 32 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 33 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 34 H -0.02 -1.17 8.10 -2.39 -0.02 -1.19 16 35 H -0.02 -1.21 8.10 -2.39 -0.02 -1.23 16 36 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -84.35 313.75 2.90 -81.45 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 0.29 Total: 7.12 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 6.46 Total: -3.93 kcal Atomic # 7 Polarization: -96.14 SS G_CDS: -5.82 Total: -101.96 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.05 Total: -28.14 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -84.35 2.90 -81.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360138971.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.111 kcal (2) G-P(sol) polarization free energy of solvation -84.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds