Wall clock time and date at job start Sun Mar 29 2020 23:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31134 * 126.55193 * 2 1 4 4 C 1.34498 * 105.61040 * 180.12211 * 3 2 1 5 5 C 1.50697 * 126.28062 * 179.90206 * 4 3 2 6 6 H 1.08998 * 109.46444 * 14.69941 * 5 4 3 7 7 C 1.53038 * 109.46500 * 254.71405 * 5 4 3 8 8 C 1.53124 * 109.27833 * 180.80700 * 7 5 4 9 9 C 1.53121 * 109.15763 * 57.65791 * 8 7 5 10 10 C 1.53034 * 109.30956 * 302.32363 * 9 8 7 11 11 N 1.46849 * 109.45896 * 134.66615 * 5 4 3 12 12 C 1.46900 * 110.99969 * 305.85388 * 11 5 4 13 13 C 1.50703 * 109.47105 * 295.27194 * 12 11 5 14 14 H 1.07996 * 119.99864 * 5.15161 * 13 12 11 15 15 C 1.37881 * 119.99767 * 185.15693 * 13 12 11 16 16 N 1.31512 * 120.00287 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99792 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46874 * 89.99481 * 17 15 13 19 19 H 1.48491 * 109.46748 * 209.99381 * 17 15 13 20 20 H 1.48496 * 109.47107 * 329.99744 * 17 15 13 21 21 N 1.29944 * 107.42507 * 359.64737 * 4 3 2 22 22 O 1.21297 * 110.25364 * 0.22354 * 21 4 3 23 23 H 1.09000 * 109.47105 * 180.24478 * 1 2 3 24 24 H 1.09000 * 109.46663 * 300.24626 * 1 2 3 25 25 H 1.09006 * 109.47066 * 60.24635 * 1 2 3 26 26 H 1.09002 * 109.49794 * 60.87102 * 7 5 4 27 27 H 1.08995 * 109.50788 * 300.75133 * 7 5 4 28 28 H 1.08999 * 109.52325 * 297.75122 * 8 7 5 29 29 H 1.08998 * 109.52263 * 177.55862 * 8 7 5 30 30 H 1.08999 * 109.50283 * 62.28967 * 9 8 7 31 31 H 1.09003 * 109.50351 * 182.36013 * 9 8 7 32 32 H 1.09005 * 109.45784 * 179.21331 * 10 9 8 33 33 H 1.08998 * 109.46718 * 299.18103 * 10 9 8 34 34 H 1.09002 * 109.47462 * 55.26982 * 12 11 5 35 35 H 1.09001 * 109.47133 * 175.26654 * 12 11 5 36 36 H 0.96996 * 120.00243 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2880 1.0534 0.0000 4 6 3.5441 0.5727 -0.0028 5 6 4.8112 1.3886 -0.0060 6 1 4.5790 2.4211 0.2550 7 6 5.4427 1.3444 -1.3993 8 6 6.7399 2.1579 -1.3924 9 6 7.6827 1.5913 -0.3272 10 6 6.9872 1.6285 1.0355 11 7 5.7517 0.8354 0.9768 12 6 5.1282 0.7339 2.3030 13 6 4.8044 2.1146 2.8129 14 1 4.9613 2.9748 2.1791 15 6 4.3081 2.2795 4.0886 16 7 4.1167 1.2319 4.8603 17 14 3.9074 3.9910 4.7209 18 1 2.4962 4.3207 4.3966 19 1 4.0998 4.0324 6.1928 20 1 4.8076 4.9802 4.0759 21 7 3.4645 -0.7243 0.0034 22 8 2.3029 -1.0736 0.0050 23 1 -0.3633 -1.0277 0.0044 24 1 -0.3633 0.5177 0.8878 25 1 -0.3633 0.5100 -0.8922 26 1 4.7504 1.7694 -2.1261 27 1 5.6626 0.3109 -1.6666 28 1 6.5154 3.1996 -1.1634 29 1 7.2154 2.0934 -2.3711 30 1 7.9379 0.5617 -0.5776 31 1 8.5912 2.1923 -0.2885 32 1 7.6511 1.2127 1.7935 33 1 6.7446 2.6598 1.2916 34 1 4.2111 0.1494 2.2296 35 1 5.8168 0.2443 2.9917 36 1 3.7672 1.3479 5.7577 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368756269.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:30:11 Heat of formation + Delta-G solvation = 62.867077 kcal Electronic energy + Delta-G solvation = -19313.418465 eV Core-core repulsion = 16414.582755 eV Total energy + Delta-G solvation = -2898.835710 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.97531 -38.59033 -35.22991 -33.70333 -33.13886 -31.77275 -30.29032 -28.38628 -26.84337 -24.52403 -23.62917 -22.59573 -21.52395 -20.57688 -18.92478 -17.56438 -17.01666 -16.23222 -15.34883 -14.66299 -14.40914 -14.04473 -13.99389 -13.46477 -13.26821 -13.09910 -12.98190 -12.56242 -12.03352 -11.79115 -11.61612 -11.16456 -11.08022 -10.95527 -10.66547 -10.59462 -10.44000 -10.39162 -10.14698 -10.06472 -9.79825 -9.61444 -9.10986 -8.43030 -7.25159 -6.03305 -4.12609 1.75093 2.88159 3.27230 3.33403 3.35396 3.36315 4.09258 4.40140 4.67938 4.90865 5.23455 5.27362 5.31911 5.38653 5.39993 5.43474 5.55505 5.75049 5.85979 5.96225 6.05265 6.19253 6.27992 6.29064 6.35089 6.40703 6.52752 6.67026 6.71279 6.85810 7.20647 7.49912 7.87625 7.97359 8.18077 8.25488 8.84071 8.96065 9.54075 11.02010 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.014059 B = 0.010883 C = 0.007113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.138024 B = 2572.259818 C = 3935.345034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.156 3.844 3 N -0.474 5.474 4 C 0.207 3.793 5 C 0.181 3.819 6 H 0.073 0.927 7 C -0.108 4.108 8 C -0.115 4.115 9 C -0.120 4.120 10 C 0.067 3.933 11 N -0.531 5.531 12 C 0.188 3.812 13 C -0.547 4.547 14 H 0.056 0.944 15 C 0.067 3.933 16 N -0.890 5.890 17 Si 0.888 3.112 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.274 1.274 21 N -0.365 5.365 22 O 0.068 5.932 23 H 0.091 0.909 24 H 0.099 0.901 25 H 0.096 0.904 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.042 0.958 34 H 0.023 0.977 35 H 0.037 0.963 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.788 -0.790 -11.576 11.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.065 4.065 3 N -0.209 5.209 4 C -0.067 4.067 5 C 0.070 3.930 6 H 0.090 0.910 7 C -0.147 4.147 8 C -0.152 4.152 9 C -0.158 4.158 10 C -0.061 4.061 11 N -0.256 5.256 12 C 0.063 3.937 13 C -0.586 4.586 14 H 0.075 0.925 15 C -0.136 4.136 16 N -0.529 5.529 17 Si 0.716 3.284 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.199 1.199 21 N -0.072 5.072 22 O 0.009 5.991 23 H 0.110 0.890 24 H 0.117 0.883 25 H 0.115 0.885 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.041 0.959 35 H 0.055 0.945 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.917 -1.421 -11.529 11.774 hybrid contribution -0.758 1.724 1.009 2.137 sum -2.675 0.303 -10.520 10.859 Atomic orbital electron populations 1.20245 0.81029 1.04888 1.05129 1.28655 0.98691 0.81379 0.97822 1.71810 1.00595 1.28886 1.19567 1.25464 0.94474 0.87864 0.98853 1.19651 0.84787 0.94956 0.93587 0.90959 1.21627 0.96737 1.01174 0.95116 1.21520 0.95577 0.99310 0.98828 1.21674 0.97496 1.01066 0.95517 1.21879 0.91538 0.97133 0.95597 1.62478 1.04465 1.49049 1.09642 1.19763 0.94591 0.96023 0.83320 1.21683 1.43966 0.93676 0.99320 0.92540 1.24938 0.95229 0.96663 0.96760 1.69951 1.44994 1.29117 1.08821 0.86645 0.78881 0.84854 0.78011 1.20578 1.21119 1.19856 1.74627 0.96042 1.16033 1.20521 1.85279 1.11932 1.35909 1.65983 0.89037 0.88282 0.88524 0.92184 0.91196 0.92150 0.92167 0.91651 0.92187 0.91086 0.93959 0.95869 0.94523 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.56 10.51 36.01 0.38 -0.18 16 2 C 0.16 2.62 8.51 -13.05 -0.11 2.51 16 3 N -0.47 -9.74 11.55 -9.87 -0.11 -9.86 16 4 C 0.21 4.48 5.35 -156.37 -0.84 3.65 16 5 C 0.18 3.79 2.04 -68.87 -0.14 3.65 16 6 H 0.07 1.65 6.85 -51.93 -0.36 1.30 16 7 C -0.11 -1.81 5.36 -26.65 -0.14 -1.96 16 8 C -0.11 -1.68 6.00 -26.60 -0.16 -1.84 16 9 C -0.12 -1.86 6.09 -26.65 -0.16 -2.02 16 10 C 0.07 1.32 5.04 -3.79 -0.02 1.30 16 11 N -0.53 -11.99 4.68 -229.44 -1.07 -13.07 16 12 C 0.19 5.10 4.85 -4.97 -0.02 5.08 16 13 C -0.55 -15.44 7.72 -34.44 -0.27 -15.70 16 14 H 0.06 1.58 5.86 -52.49 -0.31 1.27 16 15 C 0.07 1.92 5.46 -17.82 -0.10 1.83 16 16 N -0.89 -26.84 13.29 55.43 0.74 -26.11 16 17 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 N -0.37 -7.85 11.75 30.90 0.36 -7.49 16 22 O 0.07 1.27 11.31 18.11 0.20 1.47 16 23 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 25 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.42 8.12 -51.93 -0.42 1.00 16 33 H 0.04 0.89 6.74 -51.93 -0.35 0.54 16 34 H 0.02 0.69 6.44 -51.93 -0.33 0.36 16 35 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 LS Contribution 294.09 15.07 4.43 4.43 Total: -1.00 -32.98 294.09 -7.19 -40.16 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -5.13 Total: -2.78 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -1.58 Total: -3.68 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: -0.09 Total: -56.52 kcal Atomic # 8 Polarization: 1.27 SS G_CDS: 0.20 Total: 1.47 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.98 -7.19 -40.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368756269.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.029 kcal (2) G-P(sol) polarization free energy of solvation -32.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds