Wall clock time and date at job start Sun Mar 29 2020 23:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31134 * 126.55193 * 2 1 4 4 C 1.34498 * 105.61040 * 180.12211 * 3 2 1 5 5 C 1.50697 * 126.28062 * 179.90206 * 4 3 2 6 6 H 1.08998 * 109.46444 * 14.69941 * 5 4 3 7 7 C 1.53038 * 109.46500 * 254.71405 * 5 4 3 8 8 C 1.53124 * 109.27833 * 180.80700 * 7 5 4 9 9 C 1.53121 * 109.15763 * 57.65791 * 8 7 5 10 10 C 1.53034 * 109.30956 * 302.32363 * 9 8 7 11 11 N 1.46849 * 109.45896 * 134.66615 * 5 4 3 12 12 C 1.46900 * 110.99969 * 305.85388 * 11 5 4 13 13 C 1.50703 * 109.47105 * 295.27194 * 12 11 5 14 14 H 1.07996 * 119.99864 * 5.15161 * 13 12 11 15 15 C 1.37881 * 119.99767 * 185.15693 * 13 12 11 16 16 N 1.31512 * 120.00287 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99792 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46874 * 89.99481 * 17 15 13 19 19 H 1.48491 * 109.46748 * 209.99381 * 17 15 13 20 20 H 1.48496 * 109.47107 * 329.99744 * 17 15 13 21 21 N 1.29944 * 107.42507 * 359.64737 * 4 3 2 22 22 O 1.21297 * 110.25364 * 0.22354 * 21 4 3 23 23 H 1.09000 * 109.47105 * 180.24478 * 1 2 3 24 24 H 1.09000 * 109.46663 * 300.24626 * 1 2 3 25 25 H 1.09006 * 109.47066 * 60.24635 * 1 2 3 26 26 H 1.09002 * 109.49794 * 60.87102 * 7 5 4 27 27 H 1.08995 * 109.50788 * 300.75133 * 7 5 4 28 28 H 1.08999 * 109.52325 * 297.75122 * 8 7 5 29 29 H 1.08998 * 109.52263 * 177.55862 * 8 7 5 30 30 H 1.08999 * 109.50283 * 62.28967 * 9 8 7 31 31 H 1.09003 * 109.50351 * 182.36013 * 9 8 7 32 32 H 1.09005 * 109.45784 * 179.21331 * 10 9 8 33 33 H 1.08998 * 109.46718 * 299.18103 * 10 9 8 34 34 H 1.09002 * 109.47462 * 55.26982 * 12 11 5 35 35 H 1.09001 * 109.47133 * 175.26654 * 12 11 5 36 36 H 0.96996 * 120.00243 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2880 1.0534 0.0000 4 6 3.5441 0.5727 -0.0028 5 6 4.8112 1.3886 -0.0060 6 1 4.5790 2.4211 0.2550 7 6 5.4427 1.3444 -1.3993 8 6 6.7399 2.1579 -1.3924 9 6 7.6827 1.5913 -0.3272 10 6 6.9872 1.6285 1.0355 11 7 5.7517 0.8354 0.9768 12 6 5.1282 0.7339 2.3030 13 6 4.8044 2.1146 2.8129 14 1 4.9613 2.9748 2.1791 15 6 4.3081 2.2795 4.0886 16 7 4.1167 1.2319 4.8603 17 14 3.9074 3.9910 4.7209 18 1 2.4962 4.3207 4.3966 19 1 4.0998 4.0324 6.1928 20 1 4.8076 4.9802 4.0759 21 7 3.4645 -0.7243 0.0034 22 8 2.3029 -1.0736 0.0050 23 1 -0.3633 -1.0277 0.0044 24 1 -0.3633 0.5177 0.8878 25 1 -0.3633 0.5100 -0.8922 26 1 4.7504 1.7694 -2.1261 27 1 5.6626 0.3109 -1.6666 28 1 6.5154 3.1996 -1.1634 29 1 7.2154 2.0934 -2.3711 30 1 7.9379 0.5617 -0.5776 31 1 8.5912 2.1923 -0.2885 32 1 7.6511 1.2127 1.7935 33 1 6.7446 2.6598 1.2916 34 1 4.2111 0.1494 2.2296 35 1 5.8168 0.2443 2.9917 36 1 3.7672 1.3479 5.7577 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368756269.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:30:10 Heat of formation + Delta-G solvation = 37.575178 kcal Electronic energy + Delta-G solvation = -19314.515204 eV Core-core repulsion = 16414.582755 eV Total energy + Delta-G solvation = -2899.932449 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.50223 -40.20824 -36.72819 -35.57089 -34.54626 -33.67611 -31.72278 -29.57544 -28.85433 -26.25247 -25.31358 -24.06231 -23.30834 -21.99489 -20.52213 -19.09927 -18.69652 -18.18874 -17.11620 -16.34001 -16.08785 -15.54917 -15.43935 -15.00577 -14.72783 -14.37278 -14.14545 -14.04995 -13.55996 -13.47072 -13.11132 -12.98074 -12.85954 -12.57742 -12.47587 -12.20878 -12.15153 -11.94508 -11.91818 -11.57453 -11.49335 -11.24254 -10.73021 -10.57343 -9.15404 -8.22483 -6.42745 0.33573 1.30615 1.31721 1.32953 1.42343 2.09221 2.31256 2.67632 3.01464 3.10759 3.42887 3.86129 3.97504 4.07294 4.24587 4.32523 4.42987 4.59830 4.65353 4.70255 4.73048 4.83084 4.87894 4.96720 5.07123 5.09270 5.15752 5.17385 5.18837 5.24277 5.28487 5.47055 5.64745 5.93190 6.13452 6.37422 6.75365 7.28598 7.36165 8.80733 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.014059 B = 0.010883 C = 0.007113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.138024 B = 2572.259818 C = 3935.345034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.171 3.829 3 N -0.512 5.512 4 C 0.187 3.813 5 C 0.181 3.819 6 H 0.048 0.952 7 C -0.099 4.099 8 C -0.110 4.110 9 C -0.110 4.110 10 C 0.063 3.937 11 N -0.534 5.534 12 C 0.208 3.792 13 C -0.553 4.553 14 H 0.056 0.944 15 C 0.012 3.988 16 N -0.927 5.927 17 Si 0.958 3.042 18 H -0.275 1.275 19 H -0.277 1.277 20 H -0.264 1.264 21 N -0.392 5.392 22 O 0.068 5.932 23 H 0.124 0.876 24 H 0.104 0.896 25 H 0.126 0.874 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.026 0.974 34 H -0.009 1.009 35 H 0.002 0.998 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.253 0.395 -13.095 13.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.049 4.049 3 N -0.247 5.247 4 C -0.086 4.086 5 C 0.070 3.930 6 H 0.066 0.934 7 C -0.138 4.138 8 C -0.147 4.147 9 C -0.147 4.147 10 C -0.064 4.064 11 N -0.259 5.259 12 C 0.082 3.918 13 C -0.591 4.591 14 H 0.074 0.926 15 C -0.187 4.187 16 N -0.567 5.567 17 Si 0.782 3.218 18 H -0.201 1.201 19 H -0.203 1.203 20 H -0.188 1.188 21 N -0.100 5.100 22 O 0.009 5.991 23 H 0.142 0.858 24 H 0.123 0.877 25 H 0.144 0.856 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.116 0.884 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.078 0.922 33 H 0.044 0.956 34 H 0.009 0.991 35 H 0.020 0.980 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.379 -0.229 -13.070 13.287 hybrid contribution -0.700 1.287 1.480 2.083 sum -3.079 1.059 -11.590 12.039 Atomic orbital electron populations 1.20702 0.76219 1.07618 1.06616 1.29931 1.00686 0.79928 0.94383 1.71798 1.00678 1.30455 1.21766 1.25689 0.95252 0.88224 0.99464 1.19751 0.84808 0.93211 0.95224 0.93450 1.21615 0.98060 1.01668 0.92459 1.21551 0.94164 0.98706 1.00317 1.21630 0.98282 1.02114 0.92691 1.21997 0.90479 0.95411 0.98553 1.62401 1.05446 1.50373 1.07630 1.19303 0.92457 0.94848 0.85222 1.21860 1.43746 0.93975 0.99554 0.92635 1.25837 0.94979 1.00886 0.97000 1.70082 1.45820 1.31491 1.09267 0.85554 0.78790 0.79778 0.77642 1.20050 1.20260 1.18796 1.74572 0.97549 1.16173 1.21723 1.85221 1.11475 1.36360 1.66046 0.85766 0.87745 0.85587 0.90609 0.91525 0.91952 0.88444 0.91320 0.89155 0.92227 0.95608 0.99143 0.97979 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.96 10.51 71.24 0.75 -0.21 16 2 C 0.17 5.65 8.51 88.38 0.75 6.40 16 3 N -0.51 -21.25 11.55 -303.20 -3.50 -24.76 16 4 C 0.19 8.30 5.35 138.46 0.74 9.04 16 5 C 0.18 7.71 2.04 44.19 0.09 7.80 16 6 H 0.05 2.24 6.85 -2.39 -0.02 2.22 16 7 C -0.10 -3.22 5.36 30.65 0.16 -3.06 16 8 C -0.11 -2.92 6.00 30.68 0.18 -2.73 16 9 C -0.11 -3.18 6.09 30.65 0.19 -3.00 16 10 C 0.06 2.55 5.04 86.31 0.44 2.98 16 11 N -0.53 -24.89 4.68 -879.83 -4.12 -29.01 16 12 C 0.21 11.86 4.85 85.56 0.41 12.27 16 13 C -0.55 -32.13 7.72 25.60 0.20 -31.94 16 14 H 0.06 3.18 5.86 -2.91 -0.02 3.17 16 15 C 0.01 0.72 5.46 84.66 0.46 1.19 16 16 N -0.93 -57.38 13.29 21.45 0.28 -57.10 16 17 Si 0.96 45.37 29.54 68.60 2.03 47.40 16 18 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 19 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 20 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 21 N -0.39 -17.26 11.75 -60.33 -0.71 -17.97 16 22 O 0.07 2.54 11.31 74.85 0.85 3.39 16 23 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.13 1.59 8.14 -2.38 -0.02 1.57 16 26 H 0.08 2.21 8.14 -2.39 -0.02 2.20 16 27 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.06 2.47 8.12 -2.38 -0.02 2.45 16 33 H 0.03 1.11 6.74 -2.39 -0.02 1.09 16 34 H -0.01 -0.60 6.44 -2.39 -0.02 -0.61 16 35 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 36 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -75.01 294.09 0.27 -74.74 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: 1.07 Total: 4.57 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: 4.38 Total: -1.25 kcal Atomic # 7 Polarization: -120.80 SS G_CDS: -8.05 Total: -128.84 kcal Atomic # 8 Polarization: 2.54 SS G_CDS: 0.85 Total: 3.39 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -75.01 0.27 -74.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368756269.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.311 kcal (2) G-P(sol) polarization free energy of solvation -75.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds