Wall clock time and date at job start Sun Mar 29 2020 23:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30837 * 125.90266 * 2 1 4 4 N 1.40085 * 108.20612 * 180.26367 * 3 2 1 5 5 H 0.96995 * 126.03309 * 179.74290 * 4 3 2 6 6 C 1.34945 * 107.92727 * 359.71067 * 4 3 2 7 7 C 1.50693 * 126.12781 * 180.02562 * 6 4 3 8 8 C 1.35325 * 107.74640 * 0.02562 * 6 4 3 9 9 C 1.50689 * 126.04008 * 179.97438 * 8 6 4 10 10 H 1.09003 * 109.68131 * 353.36430 * 9 8 6 11 11 C 1.53294 * 109.71273 * 113.90580 * 9 8 6 12 12 O 1.42967 * 109.22654 * 172.04549 * 11 9 8 13 13 C 1.42961 * 114.16150 * 297.41869 * 12 11 9 14 14 C 1.53293 * 109.22691 * 62.57839 * 13 12 11 15 15 N 1.47152 * 108.38491 * 307.69526 * 14 13 12 16 16 C 1.36934 * 120.98779 * 230.51107 * 15 14 13 17 17 H 1.07993 * 120.00096 * 210.49936 * 16 15 14 18 18 C 1.38819 * 119.99529 * 30.49769 * 16 15 14 19 19 N 1.31614 * 119.99782 * 18.00163 * 18 16 15 20 20 Si 1.86797 * 119.99710 * 197.99745 * 18 16 15 21 21 H 1.48503 * 109.46977 * 90.00519 * 20 18 16 22 22 H 1.48506 * 109.46844 * 210.00307 * 20 18 16 23 23 H 1.48499 * 109.47409 * 329.99864 * 20 18 16 24 24 H 1.09007 * 109.47095 * 275.90247 * 1 2 3 25 25 H 1.09005 * 109.47595 * 35.90527 * 1 2 3 26 26 H 1.09003 * 109.47368 * 155.90442 * 1 2 3 27 27 H 1.09002 * 109.47171 * 269.98086 * 7 6 4 28 28 H 1.08996 * 109.47462 * 29.98289 * 7 6 4 29 29 H 1.09000 * 109.47198 * 149.98193 * 7 6 4 30 30 H 1.09007 * 109.50865 * 291.96617 * 11 9 8 31 31 H 1.08997 * 109.51648 * 52.11438 * 11 9 8 32 32 H 1.09008 * 109.51032 * 302.64938 * 13 12 11 33 33 H 1.09000 * 109.51175 * 182.50294 * 13 12 11 34 34 H 1.08998 * 109.68460 * 187.97511 * 14 13 12 35 35 H 1.08993 * 109.68027 * 67.41924 * 14 13 12 36 36 H 0.97004 * 119.99850 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 -0.0061 5 1 4.3907 1.2078 -0.0110 6 6 3.6142 -0.7155 -0.0033 7 6 4.8349 -1.5990 -0.0073 8 6 2.3270 -1.1331 0.0038 9 6 1.8598 -2.5658 0.0085 10 1 2.7146 -3.2311 -0.1132 11 6 1.1501 -2.8738 1.3319 12 8 0.5508 -4.1695 1.2542 13 6 -0.4605 -4.2873 0.2507 14 6 0.1667 -4.0517 -1.1281 15 7 0.9051 -2.7793 -1.0908 16 6 0.7101 -1.8226 -2.0508 17 1 1.5192 -1.1635 -2.3286 18 6 -0.5278 -1.7000 -2.6670 19 7 -1.5953 -2.2326 -2.1110 20 14 -0.6784 -0.7790 -4.2852 21 1 -0.4883 -1.7259 -5.4132 22 1 -2.0254 -0.1609 -4.3794 23 1 0.3586 0.2820 -4.3493 24 1 -0.3634 0.1057 1.0223 25 1 -0.3634 0.8324 -0.6027 26 1 -0.3634 -0.9381 -0.4196 27 1 5.1241 -1.8145 -1.0359 28 1 5.6536 -1.0900 0.5012 29 1 4.6100 -2.5318 0.5099 30 1 1.8745 -2.8559 2.1462 31 1 0.3783 -2.1260 1.5138 32 1 -1.2383 -3.5446 0.4287 33 1 -0.8949 -5.2863 0.2871 34 1 -0.6170 -3.9991 -1.8838 35 1 0.8510 -4.8665 -1.3642 36 1 -2.4602 -2.1472 -2.5418 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374294964.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:49 Heat of formation + Delta-G solvation = 36.964619 kcal Electronic energy + Delta-G solvation = -20011.511890 eV Core-core repulsion = 17111.552965 eV Total energy + Delta-G solvation = -2899.958925 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 2.73 seconds Orbital eigenvalues (eV) -42.25854 -39.73202 -36.42723 -34.09186 -34.04527 -32.44336 -30.72923 -29.04061 -28.22644 -27.52459 -25.00441 -24.42819 -21.58086 -20.92080 -20.20593 -18.70405 -17.84007 -17.02726 -16.56211 -16.30737 -15.84867 -15.52488 -15.34878 -15.09088 -14.48617 -14.26053 -14.02322 -13.52319 -13.46036 -13.18248 -13.07339 -12.85956 -12.73995 -12.58551 -12.34899 -12.15673 -12.05026 -11.67364 -11.43257 -10.98888 -10.78098 -10.15602 -9.95427 -9.19792 -8.39653 -7.76691 -5.22141 1.03714 1.44309 1.49328 1.53419 1.90125 2.14970 2.55895 3.17017 3.36179 3.66176 3.92607 4.00907 4.33228 4.39944 4.49998 4.61749 4.74266 4.74909 4.79715 4.80400 4.86782 4.89802 4.94662 5.08572 5.16665 5.27110 5.38806 5.55722 5.64124 5.68210 5.77003 6.06468 6.45466 6.54036 6.64710 6.94201 7.24172 7.89780 8.45545 9.24805 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.017174 B = 0.012518 C = 0.008835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.971086 B = 2236.311656 C = 3168.600051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.114 3.886 3 N -0.348 5.348 4 N -0.475 5.475 5 H 0.447 0.553 6 C 0.093 3.907 7 C -0.084 4.084 8 C -0.234 4.234 9 C 0.214 3.786 10 H 0.049 0.951 11 C 0.058 3.942 12 O -0.402 6.402 13 C 0.061 3.939 14 C 0.121 3.879 15 N -0.597 5.597 16 C -0.211 4.211 17 H 0.045 0.955 18 C -0.030 4.030 19 N -0.911 5.911 20 Si 0.933 3.067 21 H -0.288 1.288 22 H -0.294 1.294 23 H -0.290 1.290 24 H 0.056 0.944 25 H 0.041 0.959 26 H 0.128 0.872 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.032 0.968 32 H 0.036 0.964 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.014 0.986 36 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.644 -0.617 5.576 11.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.051 4.051 3 N -0.173 5.173 4 N -0.185 5.185 5 H 0.293 0.707 6 C -0.037 4.037 7 C -0.143 4.143 8 C -0.245 4.245 9 C 0.107 3.893 10 H 0.067 0.933 11 C -0.020 4.020 12 O -0.321 6.321 13 C -0.016 4.016 14 C -0.005 4.005 15 N -0.322 5.322 16 C -0.342 4.342 17 H 0.062 0.938 18 C -0.226 4.226 19 N -0.558 5.558 20 Si 0.764 3.236 21 H -0.216 1.216 22 H -0.220 1.220 23 H -0.216 1.216 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.146 0.854 27 H 0.102 0.898 28 H 0.117 0.883 29 H 0.109 0.891 30 H 0.119 0.881 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.116 0.884 34 H 0.106 0.894 35 H 0.032 0.968 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 9.563 0.520 5.633 11.111 hybrid contribution -0.296 0.496 -1.323 1.444 sum 9.267 1.016 4.309 10.270 Atomic orbital electron populations 1.20653 0.87432 1.06251 1.00288 1.22146 0.96951 0.90312 0.95722 1.77131 0.87833 1.23091 1.29226 1.45985 1.06781 1.04924 1.60768 0.70683 1.21322 0.97352 0.85235 0.99796 1.20551 0.91580 0.97997 1.04124 1.19664 0.91799 0.95724 1.17356 1.19539 0.91835 0.89768 0.88121 0.93298 1.23045 0.96626 0.84294 0.98058 1.87744 1.55061 1.32322 1.57018 1.22868 0.89404 1.00870 0.88467 1.21585 0.95799 0.85656 0.97434 1.44406 1.47015 1.14663 1.26119 1.18750 0.93301 1.10757 1.11383 0.93756 1.25250 0.95106 1.01037 1.01198 1.69972 0.97938 1.49550 1.38313 0.85790 0.76269 0.78553 0.82942 1.21568 1.22026 1.21587 0.92568 0.93962 0.85405 0.89823 0.88262 0.89067 0.88057 0.94936 0.94581 0.88420 0.89393 0.96836 0.93952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.97 8.38 71.23 0.60 -3.37 16 2 C 0.11 4.92 6.01 43.10 0.26 5.18 16 3 N -0.35 -14.08 12.70 -47.38 -0.60 -14.68 16 4 N -0.47 -14.76 7.36 -48.00 -0.35 -15.11 16 5 H 0.45 9.97 8.96 -213.34 -1.91 8.06 16 6 C 0.09 2.90 7.21 41.41 0.30 3.20 16 7 C -0.08 -1.74 10.02 71.23 0.71 -1.02 16 8 C -0.23 -9.16 3.81 -20.14 -0.08 -9.24 16 9 C 0.21 8.62 3.19 44.21 0.14 8.76 16 10 H 0.05 1.88 6.92 -2.39 -0.02 1.86 16 11 C 0.06 2.22 6.25 72.08 0.45 2.67 16 12 O -0.40 -16.10 10.74 -148.98 -1.60 -17.71 16 13 C 0.06 2.52 6.98 72.08 0.50 3.03 16 14 C 0.12 5.47 6.01 86.35 0.52 5.99 16 15 N -0.60 -28.06 2.44 -677.89 -1.65 -29.71 16 16 C -0.21 -10.86 5.74 84.04 0.48 -10.38 16 17 H 0.04 2.45 6.84 -2.91 -0.02 2.43 16 18 C -0.03 -1.54 4.19 84.86 0.36 -1.19 16 19 N -0.91 -48.27 10.55 21.65 0.23 -48.04 16 20 Si 0.93 44.37 29.59 68.60 2.03 46.40 16 21 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 22 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 23 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 24 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 25 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 26 H 0.13 6.42 3.83 -2.39 -0.01 6.41 16 27 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.09 1.82 7.26 -2.39 -0.02 1.80 16 30 H 0.10 3.26 8.14 -2.38 -0.02 3.24 16 31 H 0.03 1.35 6.91 -2.39 -0.02 1.34 16 32 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.10 3.45 8.14 -2.39 -0.02 3.44 16 34 H 0.09 4.43 5.49 -2.39 -0.01 4.42 16 35 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.25 13.14 8.31 -92.71 -0.77 12.37 16 Total: -1.00 -61.51 282.17 1.48 -60.03 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -0.81 Total: 15.21 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 4.24 Total: 3.61 kcal Atomic # 7 Polarization: -105.16 SS G_CDS: -2.38 Total: -107.54 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -1.60 Total: -17.71 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -61.51 1.48 -60.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374294964.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.993 kcal (2) G-P(sol) polarization free energy of solvation -61.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.73 seconds