Wall clock time and date at job start Sun Mar 29 2020 23:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47070 * 2 1 4 4 N 1.31133 * 126.55251 * 90.00448 * 3 2 1 5 5 C 1.34497 * 105.61457 * 179.97438 * 4 3 2 6 6 C 1.50701 * 126.28188 * 179.73082 * 5 4 3 7 7 H 1.08998 * 109.59224 * 345.00490 * 6 5 4 8 8 C 1.53198 * 109.58042 * 105.28774 * 6 5 4 9 9 C 1.53046 * 109.31201 * 174.42159 * 8 6 5 10 10 C 1.53047 * 109.53645 * 298.63653 * 9 8 6 11 11 C 1.53190 * 109.31186 * 61.36152 * 10 9 8 12 12 N 1.46923 * 109.58609 * 224.71634 * 6 5 4 13 13 C 1.36939 * 120.63198 * 6.60769 * 12 6 5 14 14 H 1.08003 * 119.99743 * 321.97567 * 13 12 6 15 15 C 1.38814 * 119.99787 * 141.97566 * 13 12 6 16 16 N 1.31618 * 119.99567 * 168.56976 * 15 13 12 17 17 Si 1.86794 * 120.00103 * 348.56608 * 15 13 12 18 18 H 1.48507 * 109.46992 * 86.88533 * 17 15 13 19 19 H 1.48502 * 109.47191 * 206.88159 * 17 15 13 20 20 H 1.48495 * 109.47462 * 326.88528 * 17 15 13 21 21 N 1.29938 * 107.42710 * 359.97438 * 5 4 3 22 22 O 1.21298 * 110.25215 * 0.02562 * 21 5 4 23 23 H 1.08994 * 109.47190 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46698 * 300.00168 * 1 2 3 25 25 H 1.09001 * 109.47405 * 59.99496 * 1 2 3 26 26 H 1.09006 * 109.47085 * 240.00197 * 2 1 3 27 27 H 1.08994 * 109.47175 * 120.00212 * 2 1 3 28 28 H 1.09003 * 109.49895 * 294.36804 * 8 6 5 29 29 H 1.08992 * 109.50026 * 54.43687 * 8 6 5 30 30 H 1.09002 * 109.45820 * 58.64978 * 9 8 6 31 31 H 1.08995 * 109.46148 * 178.61463 * 9 8 6 32 32 H 1.09001 * 109.49804 * 181.31795 * 10 9 8 33 33 H 1.09001 * 109.49182 * 301.38206 * 10 9 8 34 34 H 1.08997 * 109.58474 * 65.15797 * 11 10 9 35 35 H 1.09005 * 109.58164 * 185.44004 * 11 10 9 36 36 H 0.96998 * 119.99755 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2927 2.1571 1.0534 5 6 2.7119 3.3412 0.5728 6 6 3.1292 4.5376 1.3887 7 1 2.7978 4.4107 2.4193 8 6 4.6544 4.6767 1.3530 9 6 5.0616 5.9687 2.0652 10 6 4.4500 7.1685 1.3380 11 6 2.9225 7.0575 1.3734 12 7 2.5273 5.7531 0.8239 13 6 1.6185 5.6720 -0.1973 14 1 1.7498 4.9395 -0.9800 15 6 0.5287 6.5313 -0.2263 16 7 -0.2169 6.6120 -1.3079 17 14 0.1204 7.5728 1.2696 18 1 0.8907 8.8413 1.2147 19 1 -1.3332 7.8765 1.2795 20 1 0.4791 6.8289 2.5036 21 7 2.6861 3.2660 -0.7242 22 8 2.2985 2.1710 -1.0736 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 5.1094 3.8243 1.8577 29 1 4.9927 4.7094 0.3175 30 1 4.7015 5.9454 3.0937 31 1 6.1479 6.0578 2.0628 32 1 4.7594 8.0897 1.8318 33 1 4.7906 7.1786 0.3026 34 1 2.5741 7.1387 2.4030 35 1 2.4842 7.8565 0.7752 36 1 -0.9787 7.2121 -1.3281 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375773884.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:21 Heat of formation + Delta-G solvation = 87.605483 kcal Electronic energy + Delta-G solvation = -19321.724654 eV Core-core repulsion = 16423.961682 eV Total energy + Delta-G solvation = -2897.762972 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.89603 -38.08395 -35.35021 -34.21306 -33.09678 -31.24512 -30.68710 -29.70390 -25.58128 -24.55976 -23.82115 -22.56090 -22.05257 -20.54348 -19.15482 -17.59826 -17.13989 -16.15670 -15.54549 -14.99461 -14.35166 -14.02372 -13.85800 -13.71738 -13.44693 -13.09417 -12.81891 -12.39704 -12.11631 -11.96874 -11.64212 -11.43585 -11.11365 -11.07605 -10.89586 -10.61546 -10.51593 -10.43314 -10.27169 -9.99199 -9.78042 -9.54468 -8.81422 -8.58861 -6.84156 -5.90834 -3.43003 1.84656 2.91589 3.31614 3.38556 3.46711 3.50549 4.13191 4.53150 4.77925 4.93475 5.12271 5.14445 5.30037 5.33356 5.38657 5.42216 5.55971 5.70710 5.76683 5.88955 5.91768 6.01524 6.12858 6.18826 6.26765 6.36007 6.39474 6.44514 6.54122 6.62606 6.70713 6.72865 6.96085 8.06088 8.44713 8.86924 9.06393 9.71849 10.09645 11.23288 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.019519 B = 0.009387 C = 0.007115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.147311 B = 2982.130227 C = 3934.597390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.021 4.021 3 C 0.149 3.851 4 N -0.481 5.481 5 C 0.190 3.810 6 C 0.263 3.737 7 H 0.060 0.940 8 C -0.125 4.125 9 C -0.107 4.107 10 C -0.137 4.137 11 C 0.130 3.870 12 N -0.601 5.601 13 C -0.276 4.276 14 H 0.106 0.894 15 C 0.033 3.967 16 N -0.909 5.909 17 Si 0.887 3.113 18 H -0.285 1.285 19 H -0.303 1.303 20 H -0.270 1.270 21 N -0.336 5.336 22 O 0.073 5.927 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.095 0.905 27 H 0.102 0.898 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.026 0.974 35 H 0.074 0.926 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.465 -9.994 5.061 12.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.061 4.061 3 C -0.072 4.072 4 N -0.215 5.215 5 C -0.083 4.083 6 C 0.155 3.845 7 H 0.078 0.922 8 C -0.166 4.166 9 C -0.145 4.145 10 C -0.176 4.176 11 C 0.005 3.995 12 N -0.327 5.327 13 C -0.404 4.404 14 H 0.123 0.877 15 C -0.167 4.167 16 N -0.552 5.552 17 Si 0.717 3.283 18 H -0.212 1.212 19 H -0.231 1.231 20 H -0.195 1.195 21 N -0.040 5.040 22 O 0.013 5.987 23 H 0.089 0.911 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.114 0.886 27 H 0.120 0.880 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.044 0.956 35 H 0.092 0.908 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.572 -9.152 4.879 12.278 hybrid contribution -0.534 0.660 0.705 1.104 sum 6.037 -8.491 5.583 11.821 Atomic orbital electron populations 1.21788 0.92987 1.02651 1.03596 1.20010 0.96978 0.84078 1.04985 1.28576 0.98755 0.98307 0.81597 1.71716 1.17670 1.02929 1.29173 1.25483 0.99986 0.94671 0.88115 1.18736 0.91670 0.81059 0.93041 0.92236 1.21981 0.95875 0.97406 1.01294 1.21376 0.99250 0.94858 0.99027 1.22033 0.98147 0.96776 1.00684 1.21400 0.92689 0.88484 0.96935 1.44230 1.48858 0.98331 1.41269 1.19428 0.99802 1.20955 1.00265 0.87699 1.25535 0.95528 0.98890 0.96746 1.69772 1.19064 1.39227 1.27117 0.86879 0.76182 0.80269 0.84987 1.21172 1.23113 1.19534 1.74797 1.16304 0.96990 1.15940 1.85334 1.59731 1.17758 1.35924 0.91054 0.91705 0.91680 0.88633 0.87973 0.92361 0.91525 0.92365 0.92617 0.92654 0.91683 0.95591 0.90758 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.89 37.16 0.37 -1.24 16 2 C -0.02 -0.23 6.56 -27.88 -0.18 -0.41 16 3 C 0.15 2.53 7.77 -13.05 -0.10 2.43 16 4 N -0.48 -9.58 11.55 -9.87 -0.11 -9.69 16 5 C 0.19 4.25 6.22 -156.38 -0.97 3.28 16 6 C 0.26 5.72 3.43 -68.75 -0.24 5.48 16 7 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 8 C -0.13 -2.26 5.35 -26.61 -0.14 -2.40 16 9 C -0.11 -1.72 5.88 -26.68 -0.16 -1.87 16 10 C -0.14 -2.46 6.08 -26.61 -0.16 -2.62 16 11 C 0.13 2.88 4.19 -3.69 -0.02 2.87 16 12 N -0.60 -14.98 2.64 -166.06 -0.44 -15.41 16 13 C -0.28 -8.04 9.00 -15.06 -0.14 -8.18 16 14 H 0.11 3.30 5.21 -52.48 -0.27 3.02 16 15 C 0.03 0.98 5.33 -17.43 -0.09 0.88 16 16 N -0.91 -28.77 13.97 55.49 0.78 -28.00 16 17 Si 0.89 23.10 24.36 -169.99 -4.14 18.96 16 18 H -0.28 -7.06 6.60 56.52 0.37 -6.69 16 19 H -0.30 -8.01 7.11 56.52 0.40 -7.61 16 20 H -0.27 -6.94 6.71 56.52 0.38 -6.57 16 21 N -0.34 -7.80 9.31 30.90 0.29 -7.51 16 22 O 0.07 1.46 11.31 18.09 0.20 1.66 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.03 0.57 6.90 -51.93 -0.36 0.21 16 35 H 0.07 1.79 5.19 -51.93 -0.27 1.52 16 36 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 LS Contribution 286.59 15.07 4.32 4.32 Total: -1.00 -34.03 286.59 -6.10 -40.13 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -5.16 Total: -2.67 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -1.83 Total: -1.78 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: 0.51 Total: -60.61 kcal Atomic # 8 Polarization: 1.46 SS G_CDS: 0.20 Total: 1.66 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -4.14 Total: 18.96 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -34.03 -6.10 -40.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375773884.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.734 kcal (2) G-P(sol) polarization free energy of solvation -34.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds