Wall clock time and date at job start Sun Mar 29 2020 23:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47070 * 2 1 4 4 N 1.31133 * 126.55251 * 90.00448 * 3 2 1 5 5 C 1.34497 * 105.61457 * 179.97438 * 4 3 2 6 6 C 1.50701 * 126.28188 * 179.73082 * 5 4 3 7 7 H 1.08998 * 109.59224 * 345.00490 * 6 5 4 8 8 C 1.53198 * 109.58042 * 105.28774 * 6 5 4 9 9 C 1.53046 * 109.31201 * 174.42159 * 8 6 5 10 10 C 1.53047 * 109.53645 * 298.63653 * 9 8 6 11 11 C 1.53190 * 109.31186 * 61.36152 * 10 9 8 12 12 N 1.46923 * 109.58609 * 224.71634 * 6 5 4 13 13 C 1.36939 * 120.63198 * 6.60769 * 12 6 5 14 14 H 1.08003 * 119.99743 * 321.97567 * 13 12 6 15 15 C 1.38814 * 119.99787 * 141.97566 * 13 12 6 16 16 N 1.31618 * 119.99567 * 168.56976 * 15 13 12 17 17 Si 1.86794 * 120.00103 * 348.56608 * 15 13 12 18 18 H 1.48507 * 109.46992 * 86.88533 * 17 15 13 19 19 H 1.48502 * 109.47191 * 206.88159 * 17 15 13 20 20 H 1.48495 * 109.47462 * 326.88528 * 17 15 13 21 21 N 1.29938 * 107.42710 * 359.97438 * 5 4 3 22 22 O 1.21298 * 110.25215 * 0.02562 * 21 5 4 23 23 H 1.08994 * 109.47190 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46698 * 300.00168 * 1 2 3 25 25 H 1.09001 * 109.47405 * 59.99496 * 1 2 3 26 26 H 1.09006 * 109.47085 * 240.00197 * 2 1 3 27 27 H 1.08994 * 109.47175 * 120.00212 * 2 1 3 28 28 H 1.09003 * 109.49895 * 294.36804 * 8 6 5 29 29 H 1.08992 * 109.50026 * 54.43687 * 8 6 5 30 30 H 1.09002 * 109.45820 * 58.64978 * 9 8 6 31 31 H 1.08995 * 109.46148 * 178.61463 * 9 8 6 32 32 H 1.09001 * 109.49804 * 181.31795 * 10 9 8 33 33 H 1.09001 * 109.49182 * 301.38206 * 10 9 8 34 34 H 1.08997 * 109.58474 * 65.15797 * 11 10 9 35 35 H 1.09005 * 109.58164 * 185.44004 * 11 10 9 36 36 H 0.96998 * 119.99755 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2927 2.1571 1.0534 5 6 2.7119 3.3412 0.5728 6 6 3.1292 4.5376 1.3887 7 1 2.7978 4.4107 2.4193 8 6 4.6544 4.6767 1.3530 9 6 5.0616 5.9687 2.0652 10 6 4.4500 7.1685 1.3380 11 6 2.9225 7.0575 1.3734 12 7 2.5273 5.7531 0.8239 13 6 1.6185 5.6720 -0.1973 14 1 1.7498 4.9395 -0.9800 15 6 0.5287 6.5313 -0.2263 16 7 -0.2169 6.6120 -1.3079 17 14 0.1204 7.5728 1.2696 18 1 0.8907 8.8413 1.2147 19 1 -1.3332 7.8765 1.2795 20 1 0.4791 6.8289 2.5036 21 7 2.6861 3.2660 -0.7242 22 8 2.2985 2.1710 -1.0736 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 5.1094 3.8243 1.8577 29 1 4.9927 4.7094 0.3175 30 1 4.7015 5.9454 3.0937 31 1 6.1479 6.0578 2.0628 32 1 4.7594 8.0897 1.8318 33 1 4.7906 7.1786 0.3026 34 1 2.5741 7.1387 2.4030 35 1 2.4842 7.8565 0.7752 36 1 -0.9787 7.2121 -1.3281 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375773884.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:20 Heat of formation + Delta-G solvation = 62.400886 kcal Electronic energy + Delta-G solvation = -19322.817608 eV Core-core repulsion = 16423.961682 eV Total energy + Delta-G solvation = -2898.855926 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -46.48831 -39.74580 -36.81614 -35.47199 -35.02336 -32.89258 -32.42996 -31.22813 -27.44288 -25.76110 -25.45008 -24.31148 -23.57152 -21.94115 -20.80531 -19.33272 -18.78167 -17.93965 -17.39965 -16.40427 -15.72505 -15.68006 -15.34964 -15.14743 -14.98442 -14.79988 -14.31841 -13.89154 -13.66102 -13.42173 -13.26711 -12.77156 -12.69913 -12.56785 -12.35569 -12.22098 -12.04445 -11.97871 -11.76677 -11.65167 -11.49592 -11.35417 -10.73907 -10.49645 -8.84465 -8.17556 -5.66792 0.38887 1.23733 1.30651 1.34785 1.43503 2.09893 2.38006 2.67643 3.08560 3.14651 3.44772 3.89214 4.01090 4.02881 4.20771 4.24020 4.25822 4.33158 4.41381 4.59302 4.64455 4.78783 4.89236 4.92675 4.97954 5.00427 5.05068 5.13821 5.16737 5.20464 5.23920 5.34444 5.49821 5.92262 6.27514 6.86734 7.41075 7.54261 7.96390 9.00147 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.019519 B = 0.009387 C = 0.007115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.147311 B = 2982.130227 C = 3934.597390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.020 4.020 3 C 0.166 3.834 4 N -0.501 5.501 5 C 0.173 3.827 6 C 0.254 3.746 7 H 0.063 0.937 8 C -0.116 4.116 9 C -0.101 4.101 10 C -0.130 4.130 11 C 0.120 3.880 12 N -0.616 5.616 13 C -0.263 4.263 14 H 0.075 0.925 15 C -0.031 4.031 16 N -0.961 5.961 17 Si 0.950 3.050 18 H -0.265 1.265 19 H -0.311 1.311 20 H -0.263 1.263 21 N -0.377 5.377 22 O 0.064 5.936 23 H 0.111 0.889 24 H 0.043 0.957 25 H 0.046 0.954 26 H 0.131 0.869 27 H 0.129 0.871 28 H 0.083 0.917 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.049 0.951 34 H 0.037 0.963 35 H 0.050 0.950 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.988 -10.994 7.238 15.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.058 4.058 3 C -0.055 4.055 4 N -0.235 5.235 5 C -0.100 4.100 6 C 0.147 3.853 7 H 0.081 0.919 8 C -0.156 4.156 9 C -0.139 4.139 10 C -0.169 4.169 11 C -0.003 4.003 12 N -0.343 5.343 13 C -0.393 4.393 14 H 0.092 0.908 15 C -0.225 4.225 16 N -0.606 5.606 17 Si 0.778 3.222 18 H -0.190 1.190 19 H -0.240 1.240 20 H -0.188 1.188 21 N -0.084 5.084 22 O 0.005 5.995 23 H 0.129 0.871 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.149 0.851 27 H 0.147 0.853 28 H 0.101 0.899 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.138 -10.166 7.091 14.828 hybrid contribution -0.990 0.788 -0.015 1.265 sum 7.148 -9.378 7.076 13.752 Atomic orbital electron populations 1.21802 0.92659 1.04658 1.01672 1.20508 0.96924 0.80393 1.08020 1.29901 0.95785 0.99686 0.80083 1.71722 1.19035 1.02641 1.30079 1.25785 1.00277 0.95724 0.88190 1.19018 0.93965 0.79663 0.92628 0.91902 1.21909 0.92882 0.99896 1.00878 1.21400 1.01239 0.92267 0.98979 1.21952 0.94653 0.99554 1.00732 1.21513 0.95878 0.86430 0.96519 1.44366 1.48600 1.00543 1.40766 1.19401 1.00282 1.19182 1.00396 0.90761 1.26220 0.95808 1.01110 0.99395 1.69922 1.20192 1.41209 1.29321 0.85850 0.75389 0.79508 0.81457 1.19042 1.24022 1.18767 1.74762 1.18207 0.98664 1.16810 1.85268 1.60004 1.17425 1.36779 0.87058 0.93809 0.93431 0.85136 0.85299 0.89893 0.93476 0.90780 0.89157 0.89243 0.93196 0.94492 0.93161 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.89 71.98 0.71 -2.17 16 2 C -0.02 -0.38 6.56 29.85 0.20 -0.18 16 3 C 0.17 5.53 7.77 88.38 0.69 6.22 16 4 N -0.50 -19.82 11.55 -303.22 -3.50 -23.32 16 5 C 0.17 7.81 6.22 138.46 0.86 8.67 16 6 C 0.25 10.92 3.43 44.23 0.15 11.07 16 7 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 8 C -0.12 -3.94 5.35 30.68 0.16 -3.78 16 9 C -0.10 -2.85 5.88 30.63 0.18 -2.67 16 10 C -0.13 -4.30 6.08 30.67 0.19 -4.12 16 11 C 0.12 5.18 4.19 86.35 0.36 5.55 16 12 N -0.62 -30.73 2.64 -679.28 -1.80 -32.52 16 13 C -0.26 -15.79 9.00 84.03 0.76 -15.03 16 14 H 0.08 4.91 5.21 -2.91 -0.02 4.90 16 15 C -0.03 -1.89 5.33 84.86 0.45 -1.43 16 16 N -0.96 -63.32 13.97 21.65 0.30 -63.01 16 17 Si 0.95 48.57 24.36 68.60 1.67 50.25 16 18 H -0.26 -12.52 6.60 99.48 0.66 -11.87 16 19 H -0.31 -16.18 7.11 99.48 0.71 -15.47 16 20 H -0.26 -12.94 6.71 99.48 0.67 -12.27 16 21 N -0.38 -18.11 9.31 -60.34 -0.56 -18.67 16 22 O 0.06 2.62 11.31 74.80 0.85 3.46 16 23 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 25 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.13 1.63 8.14 -2.38 -0.02 1.61 16 27 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.09 2.37 8.14 -2.39 -0.02 2.36 16 33 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 34 H 0.04 1.51 6.90 -2.39 -0.02 1.50 16 35 H 0.05 2.38 5.19 -2.38 -0.01 2.37 16 36 H 0.26 16.29 8.31 -92.71 -0.77 15.52 16 Total: -1.00 -78.16 286.59 2.65 -75.51 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: 0.98 Total: 6.17 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 4.71 Total: 2.14 kcal Atomic # 7 Polarization: -131.97 SS G_CDS: -5.56 Total: -137.53 kcal Atomic # 8 Polarization: 2.62 SS G_CDS: 0.85 Total: 3.46 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 1.67 Total: 50.25 kcal Total: -78.16 2.65 -75.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375773884.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.907 kcal (2) G-P(sol) polarization free energy of solvation -78.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds