Wall clock time and date at job start Sun Mar 29 2020 23:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47206 * 2 1 4 4 N 1.46506 * 109.46656 * 119.99642 * 2 1 3 5 5 C 1.34773 * 119.99969 * 299.72073 * 4 2 1 6 6 O 1.21281 * 120.00220 * 0.02562 * 5 4 2 7 7 C 1.50706 * 120.00080 * 180.02562 * 5 4 2 8 8 C 1.52992 * 109.47274 * 180.02562 * 7 5 4 9 9 C 1.50696 * 109.47278 * 180.02562 * 8 7 5 10 10 H 1.08004 * 119.99953 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00439 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00481 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 119.99745 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47209 * 90.00365 * 13 11 9 15 15 H 1.48501 * 109.47358 * 209.99857 * 13 11 9 16 16 H 1.48501 * 109.47275 * 330.00116 * 13 11 9 17 17 C 1.50696 * 109.47197 * 239.99434 * 2 1 3 18 18 N 1.30498 * 125.64847 * 239.69645 * 17 2 1 19 19 C 1.34137 * 109.25374 * 179.89704 * 18 17 2 20 20 C 1.34669 * 108.02092 * 0.36366 * 19 18 17 21 21 N 1.35044 * 125.64827 * 60.00378 * 17 2 1 22 22 H 0.96999 * 126.40093 * 359.97438 * 21 17 2 23 23 H 1.09005 * 109.47120 * 300.00628 * 1 2 3 24 24 H 1.09002 * 109.46792 * 60.00402 * 1 2 3 25 25 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47350 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.46917 * 299.99521 * 3 2 1 28 28 H 1.08995 * 109.47505 * 59.99814 * 3 2 1 29 29 H 0.97005 * 119.99811 * 120.00126 * 4 2 1 30 30 H 1.09004 * 109.46762 * 300.00389 * 7 5 4 31 31 H 1.08998 * 109.46924 * 59.99727 * 7 5 4 32 32 H 1.09004 * 109.47116 * 299.99649 * 8 7 5 33 33 H 1.08993 * 109.47352 * 59.99893 * 8 7 5 34 34 H 0.97000 * 120.00722 * 179.97438 * 12 11 9 35 35 H 1.08002 * 125.98935 * 180.18546 * 19 18 17 36 36 H 1.07996 * 126.59579 * 179.81495 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 1.6972 -0.2268 2.4203 6 8 1.0038 0.7620 2.5315 7 6 2.1999 -0.9368 3.6509 8 6 1.6950 -0.2119 4.9000 9 6 2.1982 -0.9215 6.1305 10 1 2.8160 -1.8018 6.0315 11 6 1.8699 -0.4470 7.3827 12 7 2.3087 -1.0666 8.4566 13 14 0.8020 1.0760 7.5539 14 1 -0.6272 0.6755 7.6037 15 1 1.1588 1.7928 8.8046 16 1 1.0251 1.9706 6.3898 17 6 2.0323 -0.7105 -1.2304 18 7 2.7903 -1.7727 -1.2390 19 6 3.0373 -2.1296 -2.5082 20 6 2.4151 -1.2505 -3.3167 21 7 1.7774 -0.3500 -2.5066 22 1 1.2425 0.4059 -2.7953 23 1 -0.3633 0.5140 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9562 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 2.5759 -1.4793 1.1073 30 1 1.8329 -1.9632 3.6535 31 1 3.2899 -0.9408 3.6483 32 1 2.0617 0.8146 4.8976 33 1 0.6051 -0.2083 4.9024 34 1 2.0781 -0.7326 9.3376 35 1 3.6333 -2.9723 -2.8260 36 1 2.4181 -1.2553 -4.3967 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570100412.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:59:11 Heat of formation + Delta-G solvation = 12.585062 kcal Electronic energy + Delta-G solvation = -18290.655824 eV Core-core repulsion = 15389.639722 eV Total energy + Delta-G solvation = -2901.016102 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.40837 -39.58748 -36.01167 -33.42759 -32.94516 -31.81396 -30.74091 -29.03977 -27.41252 -26.04042 -23.41762 -21.52110 -21.44308 -20.16658 -19.24769 -18.34945 -17.04026 -15.97604 -15.63877 -15.41424 -14.93538 -14.27673 -14.08243 -13.97297 -13.71823 -13.49513 -13.38017 -12.68427 -12.51878 -12.30889 -11.97448 -11.61531 -11.38517 -11.33021 -10.89785 -10.31310 -10.29506 -10.09601 -9.97223 -9.73394 -9.14111 -9.05862 -8.97566 -8.59647 -8.46235 -5.98358 -3.96735 1.76409 2.69313 2.88198 3.16557 3.40750 3.47017 3.50689 3.57784 4.02036 4.54632 4.66312 4.83976 4.96933 5.11085 5.31329 5.32388 5.37074 5.41745 5.63730 5.73907 5.78649 5.81575 6.12841 6.17103 6.23066 6.25072 6.47391 6.67760 6.78281 7.03282 7.41782 7.49463 7.79594 7.83915 7.94540 8.55703 8.71829 9.05641 9.64655 11.14617 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.045800 B = 0.004423 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.209178 B = 6328.800109 C = 6743.637843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.262 3.738 3 C -0.165 4.165 4 N -0.723 5.723 5 C 0.517 3.483 6 O -0.541 6.541 7 C -0.122 4.122 8 C 0.003 3.997 9 C -0.524 4.524 10 H 0.073 0.927 11 C 0.068 3.932 12 N -0.905 5.905 13 Si 0.878 3.122 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.261 1.261 17 C 0.215 3.785 18 N -0.486 5.486 19 C -0.024 4.024 20 C -0.058 4.058 21 N -0.560 5.560 22 H 0.419 0.581 23 H 0.095 0.905 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.096 0.904 29 H 0.412 0.588 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.023 0.977 33 H 0.019 0.981 34 H 0.263 0.737 35 H 0.172 0.828 36 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.306 1.795 -25.446 25.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.173 3.827 3 C -0.223 4.223 4 N -0.379 5.379 5 C 0.306 3.694 6 O -0.418 6.418 7 C -0.162 4.162 8 C -0.035 4.035 9 C -0.562 4.562 10 H 0.091 0.909 11 C -0.133 4.133 12 N -0.544 5.544 13 Si 0.705 3.295 14 H -0.203 1.203 15 H -0.215 1.215 16 H -0.185 1.185 17 C -0.051 4.051 18 N -0.205 5.205 19 C -0.172 4.172 20 C -0.192 4.192 21 N -0.163 5.163 22 H 0.257 0.743 23 H 0.114 0.886 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.115 0.885 29 H 0.249 0.751 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.042 0.958 33 H 0.037 0.963 34 H 0.072 0.928 35 H 0.189 0.811 36 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -1.472 2.048 -24.477 24.607 hybrid contribution -0.724 0.981 -0.994 1.573 sum -2.196 3.029 -25.471 25.744 Atomic orbital electron populations 1.22298 0.93036 1.03024 1.03918 1.18354 0.93842 0.90807 0.79658 1.22304 1.01774 0.94298 1.03953 1.46114 1.55057 1.32766 1.03953 1.21495 0.79127 0.84412 0.84371 1.90569 1.38042 1.26405 1.86773 1.21669 1.02048 1.00544 0.91894 1.19358 0.96621 0.96151 0.91373 1.21139 1.32509 1.13340 0.89178 0.90911 1.24974 0.95650 0.96868 0.95797 1.69914 1.46002 1.40565 0.97878 0.86791 0.81016 0.84028 0.77665 1.20302 1.21537 1.18516 1.23130 1.00209 0.95785 0.85932 1.70080 1.15577 1.11728 1.23110 1.22384 1.04589 1.01895 0.88325 1.22776 1.03698 0.94970 0.97718 1.43085 1.41084 1.25481 1.06658 0.74314 0.88606 0.92545 0.92028 0.92045 0.92554 0.88544 0.75094 0.89529 0.89502 0.95822 0.96270 0.92773 0.81093 0.80480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 8.39 37.16 0.31 -1.67 16 2 C 0.26 3.32 1.02 -132.97 -0.14 3.19 16 3 C -0.16 -1.99 8.38 37.16 0.31 -1.68 16 4 N -0.72 -10.72 5.10 -48.68 -0.25 -10.97 16 5 C 0.52 9.39 7.25 -10.98 -0.08 9.31 16 6 O -0.54 -11.13 12.19 5.56 0.07 -11.07 16 7 C -0.12 -2.42 5.64 -27.88 -0.16 -2.57 16 8 C 0.00 0.07 3.33 -27.89 -0.09 -0.02 16 9 C -0.52 -15.15 9.66 -34.44 -0.33 -15.48 16 10 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 11 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 12 N -0.90 -28.32 13.96 55.43 0.77 -27.54 16 13 Si 0.88 22.66 27.47 -169.99 -4.67 17.99 16 14 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 16 H -0.26 -6.66 6.54 56.52 0.37 -6.29 16 17 C 0.21 2.49 6.48 -155.42 -1.01 1.48 16 18 N -0.49 -6.28 10.15 -10.81 -0.11 -6.39 16 19 C -0.02 -0.24 11.87 -17.81 -0.21 -0.45 16 20 C -0.06 -0.45 12.04 -16.56 -0.20 -0.64 16 21 N -0.56 -4.61 6.15 -10.23 -0.06 -4.68 16 22 H 0.42 2.22 8.96 -40.82 -0.37 1.85 16 23 H 0.10 1.40 6.19 -51.93 -0.32 1.08 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.10 1.41 6.15 -51.93 -0.32 1.09 16 29 H 0.41 5.84 7.64 -40.82 -0.31 5.53 16 30 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 31 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 32 H 0.02 0.61 7.15 -51.93 -0.37 0.24 16 33 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 34 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 35 H 0.17 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.18 0.70 8.06 -52.49 -0.42 0.28 16 LS Contribution 300.17 15.07 4.52 4.52 Total: -1.00 -34.66 300.17 -6.46 -41.13 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -5.05 Total: 3.60 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -1.69 Total: -6.60 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 0.35 Total: -49.58 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.07 Total: -11.07 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.67 Total: 17.99 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -34.66 -6.46 -41.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570100412.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.710 kcal (2) G-P(sol) polarization free energy of solvation -34.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds