Wall clock time and date at job start Sun Mar 29 2020 23:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47487 * 2 1 4 4 C 1.50699 * 109.47274 * 239.99939 * 2 1 3 5 5 O 1.21293 * 120.00095 * 250.94288 * 4 2 1 6 6 N 1.34773 * 120.00129 * 70.93311 * 4 2 1 7 7 C 1.37098 * 119.99991 * 3.49701 * 6 4 2 8 8 H 1.08001 * 120.00030 * 13.78472 * 7 6 4 9 9 C 1.38949 * 120.00157 * 193.78470 * 7 6 4 10 10 N 1.31407 * 120.00291 * 11.27702 * 9 7 6 11 11 Si 1.86801 * 119.99960 * 191.27903 * 9 7 6 12 12 H 1.48503 * 109.47374 * 59.99998 * 11 9 7 13 13 H 1.48498 * 109.47130 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47401 * 299.99891 * 11 9 7 15 15 C 1.46502 * 120.00498 * 183.49373 * 6 4 2 16 16 C 1.47200 * 109.47017 * 83.77216 * 15 6 4 17 17 N 5.17433 * 77.37464 * 240.94710 * 2 1 3 18 18 N 1.46898 * 109.47099 * 119.99982 * 2 1 3 19 19 C 1.47964 * 111.00030 * 294.99997 * 18 2 1 20 20 C 1.53938 * 86.30079 * 222.47114 * 19 18 2 21 21 C 1.52997 * 113.73506 * 269.30584 * 20 19 18 22 22 C 1.48188 * 111.07508 * 195.70625 * 18 2 1 23 23 H 1.08997 * 109.46809 * 305.04999 * 1 2 3 24 24 H 1.09003 * 109.46979 * 65.04883 * 1 2 3 25 25 H 1.08998 * 109.47024 * 185.04841 * 1 2 3 26 26 H 0.96997 * 120.00252 * 179.97438 * 10 9 7 27 27 H 1.08993 * 109.47618 * 203.77235 * 15 6 4 28 28 H 1.09002 * 109.46692 * 323.77815 * 15 6 4 29 29 H 1.08993 * 113.75939 * 108.10190 * 19 18 2 30 30 H 1.08997 * 113.75559 * 336.84021 * 19 18 2 31 31 H 1.09002 * 113.73320 * 138.12675 * 20 19 18 32 32 H 1.09000 * 109.47106 * 59.99940 * 21 20 19 33 33 H 1.08999 * 109.47378 * 179.97438 * 21 20 19 34 34 H 1.09004 * 109.47442 * 300.00144 * 21 20 19 35 35 H 1.09003 * 113.65920 * 23.14215 * 22 18 2 36 36 H 1.08995 * 113.92742 * 251.82159 * 22 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.5579 -1.7990 -1.1302 6 7 1.8975 -0.1363 -2.4423 7 6 1.3689 1.1242 -2.5487 8 1 1.2675 1.7432 -1.6696 9 6 0.9634 1.6052 -3.7876 10 7 0.8768 0.7884 -4.8134 11 14 0.5414 3.4130 -3.9951 12 1 1.7284 4.2401 -3.6601 13 1 0.1410 3.6696 -5.4018 14 1 -0.5802 3.7669 -3.0883 15 6 2.3159 -0.8590 -3.6460 16 6 1.2340 -1.7581 -4.0794 17 7 0.3990 -2.4520 -4.4139 18 7 2.0196 -0.6925 1.1994 19 6 1.6460 0.0445 2.4269 20 6 3.0718 -0.2575 2.9225 21 6 3.1855 -1.5624 3.7131 22 6 3.4523 -0.3977 1.4374 23 1 -0.3633 0.5902 0.8413 24 1 -0.3633 0.4335 -0.9318 25 1 -0.3633 -1.0237 0.0904 26 1 0.5934 1.1242 -5.6781 27 1 2.5356 -0.1457 -4.4402 28 1 3.2087 -1.4445 -3.4262 29 1 0.8656 -0.4428 3.0112 30 1 1.4540 1.1045 2.2613 31 1 3.5502 0.5850 3.4220 32 1 2.8778 -2.3969 3.0830 33 1 4.2188 -1.7074 4.0284 34 1 2.5410 -1.5129 4.5907 35 1 3.7891 0.5330 0.9807 36 1 4.1164 -1.2370 1.2316 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575135862.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:11:51 Heat of formation + Delta-G solvation = 41.713197 kcal Electronic energy + Delta-G solvation = -19086.282644 eV Core-core repulsion = 16186.529633 eV Total energy + Delta-G solvation = -2899.753011 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.10418 -38.39510 -35.53018 -34.44437 -32.94269 -31.60389 -29.30472 -27.49605 -26.01833 -24.92245 -24.67226 -22.06558 -19.28777 -18.79749 -17.93108 -16.61987 -16.20848 -15.51829 -14.91795 -14.47706 -14.33139 -13.99155 -13.69859 -13.12175 -12.90286 -12.61358 -12.51508 -12.00258 -11.80925 -11.63062 -11.56332 -11.40846 -11.30833 -11.21821 -11.17035 -10.71444 -10.58951 -10.48608 -10.33014 -10.25802 -10.11708 -9.35197 -8.62165 -8.17387 -8.12196 -6.51532 -4.12751 3.02166 3.11389 3.13488 3.58459 3.79760 4.03321 4.21408 4.24338 4.57990 4.84692 4.88394 5.03437 5.31301 5.50239 5.53576 5.58711 5.70123 5.74274 5.81540 5.88744 5.95380 6.06170 6.10932 6.24449 6.32677 6.41442 6.50640 6.52591 6.70195 6.89225 6.90817 7.19547 7.44741 7.48069 8.17789 8.88068 8.92646 9.27712 9.68292 10.47772 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.023540 B = 0.007441 C = 0.006226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.170435 B = 3762.272220 C = 4496.074160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.050 3.950 3 H 0.063 0.937 4 C 0.474 3.526 5 O -0.577 6.577 6 N -0.447 5.447 7 C -0.331 4.331 8 H 0.103 0.897 9 C 0.035 3.965 10 N -0.878 5.878 11 Si 0.928 3.072 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.273 1.273 15 C 0.222 3.778 16 C 0.259 3.741 17 N -0.491 5.491 18 N -0.452 5.452 19 C 0.003 3.997 20 C -0.122 4.122 21 C -0.128 4.128 22 C 0.014 3.986 23 H 0.050 0.950 24 H 0.083 0.917 25 H 0.057 0.943 26 H 0.275 0.725 27 H 0.147 0.853 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.182 4.447 10.330 11.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.062 4.062 3 H 0.081 0.919 4 C 0.262 3.738 5 O -0.460 6.460 6 N -0.168 5.168 7 C -0.458 4.458 8 H 0.121 0.879 9 C -0.169 4.169 10 N -0.518 5.518 11 Si 0.754 3.246 12 H -0.197 1.197 13 H -0.207 1.207 14 H -0.198 1.198 15 C 0.096 3.904 16 C -0.059 4.059 17 N -0.172 5.172 18 N -0.175 5.175 19 C -0.126 4.126 20 C -0.141 4.141 21 C -0.185 4.185 22 C -0.115 4.115 23 H 0.069 0.931 24 H 0.102 0.898 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.164 0.836 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.927 2.229 9.532 10.218 hybrid contribution 0.050 2.287 -0.241 2.300 sum 2.976 4.516 9.292 10.751 Atomic orbital electron populations 1.21688 0.92728 1.02267 1.02834 1.21928 0.97304 0.96081 0.90848 0.91929 1.19977 0.83163 0.86122 0.84536 1.90566 1.47516 1.21570 1.86370 1.43637 1.55259 1.14785 1.03116 1.19672 1.40632 0.89569 0.95915 0.87894 1.25251 0.96122 1.00111 0.95428 1.69840 1.45159 1.34556 1.02201 0.85966 0.79009 0.81809 0.77799 1.19723 1.20729 1.19836 1.18917 0.88797 0.92281 0.90436 1.29469 0.94147 0.90717 0.91528 1.80863 1.10809 1.14624 1.10859 1.68527 1.04781 1.44329 0.99889 1.23966 0.97444 0.97649 0.93518 1.22804 0.96560 0.98713 0.96005 1.21499 1.00952 0.96752 0.99280 1.23911 0.92645 1.00947 0.93980 0.93133 0.89796 0.92384 0.91401 0.83565 0.90204 0.89796 0.91670 0.90870 0.91314 0.92904 0.92845 0.91788 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 8.85 37.16 0.33 -2.18 16 2 C 0.05 0.96 1.24 -68.87 -0.09 0.87 16 3 H 0.06 1.14 6.52 -51.93 -0.34 0.81 16 4 C 0.47 10.85 6.61 -10.99 -0.07 10.78 16 5 O -0.58 -14.68 15.85 5.55 0.09 -14.59 16 6 N -0.45 -10.36 2.61 -117.94 -0.31 -10.67 16 7 C -0.33 -7.51 7.84 -14.93 -0.12 -7.63 16 8 H 0.10 2.19 5.87 -52.49 -0.31 1.88 16 9 C 0.03 0.79 5.18 -17.47 -0.09 0.70 16 10 N -0.88 -21.21 8.91 55.50 0.49 -20.71 16 11 Si 0.93 18.06 29.57 -169.99 -5.03 13.03 16 12 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 13 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 14 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 15 C 0.22 5.01 5.09 -6.83 -0.03 4.98 16 16 C 0.26 6.44 14.06 -20.76 -0.29 6.14 16 17 N -0.49 -12.88 18.54 42.15 0.78 -12.09 16 18 N -0.45 -7.89 5.43 -230.72 -1.25 -9.14 16 19 C 0.00 0.04 6.49 -2.76 -0.02 0.03 16 20 C -0.12 -1.51 4.60 -89.67 -0.41 -1.92 16 21 C -0.13 -1.46 9.65 37.16 0.36 -1.10 16 22 C 0.01 0.22 6.91 -2.64 -0.02 0.20 16 23 H 0.05 0.77 7.49 -51.93 -0.39 0.38 16 24 H 0.08 1.68 6.48 -51.93 -0.34 1.34 16 25 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.27 6.46 8.31 -40.82 -0.34 6.13 16 27 H 0.15 3.27 5.75 -51.93 -0.30 2.98 16 28 H 0.08 1.67 7.57 -51.93 -0.39 1.28 16 29 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 30 H 0.07 0.82 7.84 -51.93 -0.41 0.41 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.93 7.99 -51.93 -0.41 0.51 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.96 7.70 -51.93 -0.40 0.56 16 36 H 0.09 1.47 8.10 -51.93 -0.42 1.05 16 LS Contribution 299.02 15.07 4.51 4.51 Total: -1.00 -28.33 299.02 -6.12 -34.46 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -4.95 Total: 4.33 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: -0.45 Total: 10.87 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.28 Total: -52.61 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.09 Total: -14.59 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.33 -6.12 -34.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575135862.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.171 kcal (2) G-P(sol) polarization free energy of solvation -28.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds