Wall clock time and date at job start Sun Mar 29 2020 23:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47487 * 2 1 4 4 C 1.50699 * 109.47274 * 239.99939 * 2 1 3 5 5 O 1.21293 * 120.00095 * 250.94288 * 4 2 1 6 6 N 1.34773 * 120.00129 * 70.93311 * 4 2 1 7 7 C 1.37098 * 119.99991 * 3.49701 * 6 4 2 8 8 H 1.08001 * 120.00030 * 13.78472 * 7 6 4 9 9 C 1.38949 * 120.00157 * 193.78470 * 7 6 4 10 10 N 1.31407 * 120.00291 * 11.27702 * 9 7 6 11 11 Si 1.86801 * 119.99960 * 191.27903 * 9 7 6 12 12 H 1.48503 * 109.47374 * 59.99998 * 11 9 7 13 13 H 1.48498 * 109.47130 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47401 * 299.99891 * 11 9 7 15 15 C 1.46502 * 120.00498 * 183.49373 * 6 4 2 16 16 C 1.47200 * 109.47017 * 83.77216 * 15 6 4 17 17 N 5.17433 * 77.37464 * 240.94710 * 2 1 3 18 18 N 1.46898 * 109.47099 * 119.99982 * 2 1 3 19 19 C 1.47964 * 111.00030 * 294.99997 * 18 2 1 20 20 C 1.53938 * 86.30079 * 222.47114 * 19 18 2 21 21 C 1.52997 * 113.73506 * 269.30584 * 20 19 18 22 22 C 1.48188 * 111.07508 * 195.70625 * 18 2 1 23 23 H 1.08997 * 109.46809 * 305.04999 * 1 2 3 24 24 H 1.09003 * 109.46979 * 65.04883 * 1 2 3 25 25 H 1.08998 * 109.47024 * 185.04841 * 1 2 3 26 26 H 0.96997 * 120.00252 * 179.97438 * 10 9 7 27 27 H 1.08993 * 109.47618 * 203.77235 * 15 6 4 28 28 H 1.09002 * 109.46692 * 323.77815 * 15 6 4 29 29 H 1.08993 * 113.75939 * 108.10190 * 19 18 2 30 30 H 1.08997 * 113.75559 * 336.84021 * 19 18 2 31 31 H 1.09002 * 113.73320 * 138.12675 * 20 19 18 32 32 H 1.09000 * 109.47106 * 59.99940 * 21 20 19 33 33 H 1.08999 * 109.47378 * 179.97438 * 21 20 19 34 34 H 1.09004 * 109.47442 * 300.00144 * 21 20 19 35 35 H 1.09003 * 113.65920 * 23.14215 * 22 18 2 36 36 H 1.08995 * 113.92742 * 251.82159 * 22 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.5579 -1.7990 -1.1302 6 7 1.8975 -0.1363 -2.4423 7 6 1.3689 1.1242 -2.5487 8 1 1.2675 1.7432 -1.6696 9 6 0.9634 1.6052 -3.7876 10 7 0.8768 0.7884 -4.8134 11 14 0.5414 3.4130 -3.9951 12 1 1.7284 4.2401 -3.6601 13 1 0.1410 3.6696 -5.4018 14 1 -0.5802 3.7669 -3.0883 15 6 2.3159 -0.8590 -3.6460 16 6 1.2340 -1.7581 -4.0794 17 7 0.3990 -2.4520 -4.4139 18 7 2.0196 -0.6925 1.1994 19 6 1.6460 0.0445 2.4269 20 6 3.0718 -0.2575 2.9225 21 6 3.1855 -1.5624 3.7131 22 6 3.4523 -0.3977 1.4374 23 1 -0.3633 0.5902 0.8413 24 1 -0.3633 0.4335 -0.9318 25 1 -0.3633 -1.0237 0.0904 26 1 0.5934 1.1242 -5.6781 27 1 2.5356 -0.1457 -4.4402 28 1 3.2087 -1.4445 -3.4262 29 1 0.8656 -0.4428 3.0112 30 1 1.4540 1.1045 2.2613 31 1 3.5502 0.5850 3.4220 32 1 2.8778 -2.3969 3.0830 33 1 4.2188 -1.7074 4.0284 34 1 2.5410 -1.5129 4.5907 35 1 3.7891 0.5330 0.9807 36 1 4.1164 -1.2370 1.2316 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575135862.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:11:51 Heat of formation + Delta-G solvation = 23.487177 kcal Electronic energy + Delta-G solvation = -19087.072984 eV Core-core repulsion = 16186.529633 eV Total energy + Delta-G solvation = -2900.543351 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.47914 -39.98815 -37.42970 -36.37084 -34.35876 -33.37863 -30.53880 -29.21803 -27.25981 -26.57075 -25.92234 -23.54272 -20.98591 -19.91897 -19.59801 -18.29391 -17.99268 -16.93908 -16.34351 -16.06966 -15.92923 -15.40232 -15.27033 -14.63443 -14.27412 -14.17268 -13.89050 -13.66285 -13.52158 -13.15913 -13.02951 -12.96551 -12.83497 -12.73099 -12.41261 -12.38296 -12.12358 -12.08094 -11.88521 -11.39502 -11.27127 -11.12456 -10.31542 -9.95275 -9.50241 -8.27670 -5.94118 1.46527 1.54140 1.62639 1.77451 2.02828 2.23096 2.36070 2.85794 3.09277 3.26186 3.57392 3.65225 3.94183 4.09675 4.22952 4.30893 4.37295 4.56927 4.63485 4.68967 4.73943 4.85447 4.92452 4.93904 5.08515 5.10137 5.16709 5.21618 5.30148 5.44123 5.56514 5.58487 5.69857 6.16943 6.39957 6.93098 7.10601 7.49716 7.89785 8.71413 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.023540 B = 0.007441 C = 0.006226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.170435 B = 3762.272220 C = 4496.074160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.057 3.943 3 H 0.075 0.925 4 C 0.463 3.537 5 O -0.610 6.610 6 N -0.455 5.455 7 C -0.338 4.338 8 H 0.119 0.881 9 C -0.004 4.004 10 N -0.906 5.906 11 Si 0.992 3.008 12 H -0.261 1.261 13 H -0.291 1.291 14 H -0.269 1.269 15 C 0.222 3.778 16 C 0.267 3.733 17 N -0.522 5.522 18 N -0.482 5.482 19 C 0.006 3.994 20 C -0.104 4.104 21 C -0.126 4.126 22 C 0.007 3.993 23 H 0.085 0.915 24 H 0.064 0.936 25 H 0.038 0.962 26 H 0.272 0.728 27 H 0.151 0.849 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.040 0.960 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.257 6.483 12.248 14.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.054 4.054 3 H 0.092 0.908 4 C 0.252 3.748 5 O -0.496 6.496 6 N -0.175 5.175 7 C -0.465 4.465 8 H 0.136 0.864 9 C -0.204 4.204 10 N -0.546 5.546 11 Si 0.816 3.184 12 H -0.185 1.185 13 H -0.217 1.217 14 H -0.194 1.194 15 C 0.096 3.904 16 C -0.050 4.050 17 N -0.203 5.203 18 N -0.206 5.206 19 C -0.122 4.122 20 C -0.123 4.123 21 C -0.183 4.183 22 C -0.122 4.122 23 H 0.104 0.896 24 H 0.083 0.917 25 H 0.057 0.943 26 H 0.082 0.918 27 H 0.168 0.832 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.119 0.881 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.006 4.275 11.472 12.606 hybrid contribution 0.047 1.598 -0.828 1.801 sum 3.053 5.873 10.644 12.534 Atomic orbital electron populations 1.21605 0.92227 1.01514 1.03270 1.21859 0.97484 0.96131 0.89945 0.90766 1.20773 0.82448 0.85999 0.85552 1.90534 1.48907 1.23134 1.86979 1.43880 1.55152 1.15149 1.03309 1.20045 1.40399 0.89413 0.96620 0.86379 1.26020 0.95831 1.03570 0.94990 1.69951 1.46131 1.36069 1.02471 0.84980 0.79039 0.77370 0.77009 1.18516 1.21720 1.19414 1.19045 0.88451 0.92195 0.90748 1.29971 0.94028 0.90284 0.90718 1.80842 1.11822 1.15687 1.11936 1.68523 1.06090 1.45584 1.00381 1.24092 0.98467 0.98238 0.91450 1.22753 0.95532 0.99960 0.94065 1.21490 1.02208 0.95314 0.99277 1.23951 0.91399 1.00205 0.96682 0.89588 0.91742 0.94279 0.91754 0.83246 0.88952 0.88943 0.90038 0.88057 0.94054 0.91579 0.90979 0.91458 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.51 8.85 71.98 0.64 -3.87 16 2 C 0.06 2.12 1.24 44.17 0.05 2.18 16 3 H 0.07 2.54 6.52 -2.39 -0.02 2.53 16 4 C 0.46 21.18 6.61 87.66 0.58 21.76 16 5 O -0.61 -31.52 15.85 -3.07 -0.05 -31.57 16 6 N -0.45 -21.02 2.61 -645.42 -1.68 -22.70 16 7 C -0.34 -15.01 7.84 84.04 0.66 -14.35 16 8 H 0.12 4.78 5.87 -2.91 -0.02 4.77 16 9 C 0.00 -0.16 5.18 84.93 0.44 0.28 16 10 N -0.91 -43.70 8.91 21.66 0.19 -43.50 16 11 Si 0.99 35.88 29.57 68.60 2.03 37.91 16 12 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 13 H -0.29 -10.92 7.11 99.48 0.71 -10.22 16 14 H -0.27 -9.53 7.11 99.48 0.71 -8.82 16 15 C 0.22 10.12 5.09 84.57 0.43 10.55 16 16 C 0.27 13.47 14.06 89.44 1.26 14.73 16 17 N -0.52 -27.82 18.54 20.01 0.37 -27.45 16 18 N -0.48 -16.17 5.43 -883.85 -4.80 -20.97 16 19 C 0.01 0.14 6.49 86.41 0.56 0.70 16 20 C -0.10 -2.27 4.60 -10.15 -0.05 -2.31 16 21 C -0.13 -2.58 9.65 71.98 0.69 -1.89 16 22 C 0.01 0.19 6.91 86.36 0.60 0.79 16 23 H 0.09 2.36 7.49 -2.39 -0.02 2.35 16 24 H 0.06 2.51 6.48 -2.39 -0.02 2.49 16 25 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.27 12.82 8.31 -92.71 -0.77 12.05 16 27 H 0.15 6.75 5.75 -2.39 -0.01 6.74 16 28 H 0.09 3.93 7.57 -2.39 -0.02 3.91 16 29 H 0.09 2.06 8.10 -2.39 -0.02 2.04 16 30 H 0.08 1.71 7.84 -2.39 -0.02 1.69 16 31 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.04 1.08 7.99 -2.39 -0.02 1.06 16 33 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.07 1.92 7.70 -2.39 -0.02 1.90 16 36 H 0.07 2.26 8.10 -2.39 -0.02 2.24 16 Total: -1.00 -60.71 299.02 3.01 -57.71 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 1.08 Total: 22.02 kcal Atomic # 6 Polarization: 22.70 SS G_CDS: 5.86 Total: 28.56 kcal Atomic # 7 Polarization: -108.70 SS G_CDS: -5.92 Total: -114.62 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.05 Total: -31.57 kcal Atomic # 14 Polarization: 35.88 SS G_CDS: 2.03 Total: 37.91 kcal Total: -60.71 3.01 -57.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575135862.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.193 kcal (2) G-P(sol) polarization free energy of solvation -60.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds