Wall clock time and date at job start Sun Mar 29 2020 22:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00345 * 2 1 4 4 H 1.48504 * 109.46901 * 239.99772 * 3 2 1 5 5 H 1.48501 * 109.47188 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47596 * 119.99603 * 3 2 1 7 7 C 1.37883 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00116 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99811 * 0.02562 * 7 2 1 10 10 O 1.42906 * 110.28620 * 299.32730 * 9 7 2 11 11 C 1.54257 * 110.32628 * 61.45328 * 9 7 2 12 12 C 1.54381 * 105.14978 * 118.84329 * 11 9 7 13 13 N 1.48720 * 104.51692 * 336.27274 * 12 11 9 14 14 C 1.46900 * 111.01831 * 158.96284 * 13 12 11 15 15 C 1.52999 * 109.46697 * 74.48907 * 14 13 12 16 16 N 1.46506 * 109.47032 * 179.97438 * 15 14 13 17 17 C 1.34946 * 126.03147 * 124.71608 * 16 15 14 18 18 C 1.35322 * 107.74293 * 179.84432 * 17 16 15 19 19 C 1.39870 * 107.91987 * 0.42046 * 18 17 16 20 20 N 1.30840 * 108.20108 * 359.74158 * 19 18 17 21 21 C 1.48567 * 104.28820 * 39.36098 * 13 12 11 22 22 H 0.97002 * 119.99478 * 0.02562 * 1 2 3 23 23 H 0.96695 * 113.99929 * 60.67881 * 10 9 7 24 24 H 1.09002 * 110.32715 * 237.79384 * 11 9 7 25 25 H 1.08998 * 110.32251 * 359.89910 * 11 9 7 26 26 H 1.09004 * 110.40867 * 94.98012 * 12 11 9 27 27 H 1.08996 * 110.41187 * 217.42234 * 12 11 9 28 28 H 1.08997 * 109.47620 * 194.49319 * 14 13 12 29 29 H 1.08999 * 109.47148 * 314.49752 * 14 13 12 30 30 H 1.09001 * 109.47808 * 300.00257 * 15 14 13 31 31 H 1.08997 * 109.47144 * 60.00574 * 15 14 13 32 32 H 1.08001 * 126.13641 * 0.02562 * 17 16 15 33 33 H 1.07995 * 126.04033 * 180.16520 * 18 17 16 34 34 H 1.07998 * 125.90099 * 179.71291 * 19 18 17 35 35 H 1.08999 * 110.41133 * 201.79165 * 21 13 12 36 36 H 1.09001 * 110.41003 * 79.35561 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.4342 -2.5997 1.1689 11 6 0.3849 -2.6178 -1.2704 12 6 0.9178 -3.8657 -2.0067 13 7 2.3140 -4.0191 -1.5179 14 6 2.7937 -5.3933 -1.7165 15 6 3.0992 -5.6176 -3.1988 16 7 3.5783 -6.9879 -3.3967 17 6 3.0543 -7.8972 -4.2450 18 6 3.7815 -9.0329 -4.1328 19 6 4.7781 -8.8131 -3.1764 20 7 4.6572 -7.5875 -2.7345 21 6 2.2350 -3.6865 -0.0722 22 1 -0.4849 0.8401 -0.0004 23 1 -0.2327 -1.9035 1.2436 24 1 -0.6629 -2.7545 -1.0032 25 1 0.5035 -1.7313 -1.8934 26 1 0.3255 -4.7428 -1.7457 27 1 0.9060 -3.7050 -3.0847 28 1 3.6996 -5.5501 -1.1310 29 1 2.0260 -6.0964 -1.3934 30 1 2.1933 -5.4609 -3.7843 31 1 3.8669 -4.9146 -3.5219 32 1 2.2082 -7.7450 -4.8988 33 1 3.6183 -9.9487 -4.6815 34 1 5.5191 -9.5311 -2.8574 35 1 3.2146 -3.3920 0.3043 36 1 1.8492 -4.5352 0.4926 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592150289.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:09 Heat of formation + Delta-G solvation = 38.023781 kcal Electronic energy + Delta-G solvation = -18400.485282 eV Core-core repulsion = 15500.572286 eV Total energy + Delta-G solvation = -2899.912996 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.10412 -38.48060 -35.38447 -33.36223 -32.10543 -30.48873 -29.77499 -28.15463 -27.03751 -24.51583 -22.94961 -21.08023 -20.75065 -20.10986 -19.42890 -17.20319 -17.03376 -15.68019 -15.03885 -14.88738 -14.75691 -14.20839 -14.01073 -13.74000 -13.33409 -12.96557 -12.68777 -12.51450 -12.17081 -11.92961 -11.51613 -11.15989 -11.08179 -10.87949 -10.61258 -10.54874 -10.42872 -10.33775 -9.95812 -9.43604 -9.07216 -8.62089 -8.56203 -8.15591 -7.97182 -6.17043 -4.22686 1.90653 2.51349 2.82962 3.28197 3.32127 3.36243 4.32456 4.36114 4.65802 4.81949 5.04226 5.11235 5.13886 5.37298 5.47956 5.61180 5.67919 5.79417 5.92517 5.95553 5.98238 6.09542 6.14653 6.31917 6.44908 6.63066 6.83041 6.98685 7.00823 7.15789 7.47989 7.59745 7.61481 7.71714 7.84408 8.20600 8.79716 9.41506 9.50536 10.90480 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.041350 B = 0.004487 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.979349 B = 6238.276246 C = 6411.931619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.066 3.934 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.249 3.751 10 O -0.595 6.595 11 C -0.120 4.120 12 C 0.027 3.973 13 N -0.499 5.499 14 C 0.037 3.963 15 C 0.138 3.862 16 N -0.365 5.365 17 C 0.053 3.947 18 C -0.282 4.282 19 C 0.037 3.963 20 N -0.292 5.292 21 C 0.056 3.944 22 H 0.266 0.734 23 H 0.383 0.617 24 H 0.051 0.949 25 H 0.076 0.924 26 H 0.030 0.970 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.034 0.966 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.171 0.829 33 H 0.144 0.856 34 H 0.180 0.820 35 H 0.079 0.921 36 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.815 -12.590 -8.179 15.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.080 0.920 9 C 0.209 3.791 10 O -0.404 6.404 11 C -0.159 4.159 12 C -0.100 4.100 13 N -0.224 5.224 14 C -0.093 4.093 15 C 0.017 3.983 16 N -0.147 5.147 17 C -0.094 4.094 18 C -0.312 4.312 19 C -0.149 4.149 20 N -0.114 5.114 21 C -0.071 4.071 22 H 0.076 0.924 23 H 0.233 0.767 24 H 0.070 0.930 25 H 0.095 0.905 26 H 0.048 0.952 27 H 0.085 0.915 28 H 0.102 0.898 29 H 0.053 0.947 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.189 0.811 33 H 0.162 0.838 34 H 0.197 0.803 35 H 0.097 0.903 36 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 3.821 -11.592 -7.541 14.347 hybrid contribution -0.884 0.167 -0.414 0.990 sum 2.937 -11.425 -7.955 14.228 Atomic orbital electron populations 1.69685 1.05911 1.27420 1.51144 1.25003 0.94987 0.99408 0.94107 0.86526 0.79543 0.82387 0.78781 1.20125 1.21305 1.20163 1.21610 0.93560 0.90337 1.50289 0.91972 1.19243 0.86419 0.91495 0.81913 1.86087 1.52111 1.55766 1.46398 1.22853 0.98333 0.95413 0.99299 1.23281 0.88452 0.98753 0.99545 1.65257 1.21503 1.19773 1.15842 1.22417 1.01150 0.91064 0.94679 1.21721 1.00440 0.77478 0.98675 1.48852 1.23553 1.11742 1.30564 1.22599 1.00140 0.90153 0.96535 1.21475 1.01782 1.00172 1.07738 1.23873 0.99707 0.94412 0.96895 1.77387 1.05315 1.09267 1.19447 1.22976 1.00646 0.97406 0.86115 0.92406 0.76687 0.92999 0.90487 0.95220 0.91513 0.89774 0.94732 0.88706 0.88644 0.81131 0.83805 0.80289 0.90254 0.94984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.01 10.81 55.43 0.60 -23.41 16 2 C 0.07 1.75 5.02 -17.82 -0.09 1.66 16 3 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -13.99 8.10 -34.44 -0.28 -14.27 16 8 H 0.06 1.69 7.53 -52.49 -0.40 1.29 16 9 C 0.25 6.19 1.05 -90.39 -0.10 6.09 16 10 O -0.59 -15.51 12.94 -35.23 -0.46 -15.97 16 11 C -0.12 -2.74 5.55 -25.35 -0.14 -2.88 16 12 C 0.03 0.51 5.93 -2.09 -0.01 0.50 16 13 N -0.50 -9.50 5.34 -229.83 -1.23 -10.73 16 14 C 0.04 0.59 5.02 -3.82 -0.02 0.57 16 15 C 0.14 1.84 6.62 -4.04 -0.03 1.82 16 16 N -0.36 -4.93 3.68 -61.36 -0.23 -5.15 16 17 C 0.05 0.58 11.45 -17.22 -0.20 0.38 16 18 C -0.28 -2.99 10.80 -40.01 -0.43 -3.42 16 19 C 0.04 0.44 12.03 -17.36 -0.21 0.23 16 20 N -0.29 -4.32 12.42 30.62 0.38 -3.94 16 21 C 0.06 1.23 5.74 -2.18 -0.01 1.21 16 22 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 23 H 0.38 10.05 7.32 45.56 0.33 10.39 16 24 H 0.05 1.19 7.98 -51.93 -0.41 0.77 16 25 H 0.08 1.91 7.23 -51.93 -0.38 1.53 16 26 H 0.03 0.52 7.75 -51.93 -0.40 0.12 16 27 H 0.07 1.10 7.86 -51.93 -0.41 0.69 16 28 H 0.08 1.43 8.08 -51.93 -0.42 1.01 16 29 H 0.03 0.56 7.77 -51.93 -0.40 0.16 16 30 H 0.09 1.08 7.40 -51.93 -0.38 0.70 16 31 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 34 H 0.18 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.08 1.76 7.67 -51.93 -0.40 1.36 16 36 H 0.03 0.69 7.94 -51.93 -0.41 0.28 16 LS Contribution 298.51 15.07 4.50 4.50 Total: -1.00 -29.31 298.51 -7.47 -36.78 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -4.51 Total: 10.19 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -1.51 Total: -8.10 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: -0.47 Total: -43.23 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.46 Total: -15.97 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.31 -7.47 -36.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150289.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.805 kcal (2) G-P(sol) polarization free energy of solvation -29.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds