Wall clock time and date at job start Sun Mar 29 2020 22:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00345 * 2 1 4 4 H 1.48504 * 109.46901 * 239.99772 * 3 2 1 5 5 H 1.48501 * 109.47188 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47596 * 119.99603 * 3 2 1 7 7 C 1.37883 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00116 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99811 * 0.02562 * 7 2 1 10 10 O 1.42906 * 110.28620 * 299.32730 * 9 7 2 11 11 C 1.54257 * 110.32628 * 61.45328 * 9 7 2 12 12 C 1.54381 * 105.14978 * 118.84329 * 11 9 7 13 13 N 1.48720 * 104.51692 * 336.27274 * 12 11 9 14 14 C 1.46900 * 111.01831 * 158.96284 * 13 12 11 15 15 C 1.52999 * 109.46697 * 74.48907 * 14 13 12 16 16 N 1.46506 * 109.47032 * 179.97438 * 15 14 13 17 17 C 1.34946 * 126.03147 * 124.71608 * 16 15 14 18 18 C 1.35322 * 107.74293 * 179.84432 * 17 16 15 19 19 C 1.39870 * 107.91987 * 0.42046 * 18 17 16 20 20 N 1.30840 * 108.20108 * 359.74158 * 19 18 17 21 21 C 1.48567 * 104.28820 * 39.36098 * 13 12 11 22 22 H 0.97002 * 119.99478 * 0.02562 * 1 2 3 23 23 H 0.96695 * 113.99929 * 60.67881 * 10 9 7 24 24 H 1.09002 * 110.32715 * 237.79384 * 11 9 7 25 25 H 1.08998 * 110.32251 * 359.89910 * 11 9 7 26 26 H 1.09004 * 110.40867 * 94.98012 * 12 11 9 27 27 H 1.08996 * 110.41187 * 217.42234 * 12 11 9 28 28 H 1.08997 * 109.47620 * 194.49319 * 14 13 12 29 29 H 1.08999 * 109.47148 * 314.49752 * 14 13 12 30 30 H 1.09001 * 109.47808 * 300.00257 * 15 14 13 31 31 H 1.08997 * 109.47144 * 60.00574 * 15 14 13 32 32 H 1.08001 * 126.13641 * 0.02562 * 17 16 15 33 33 H 1.07995 * 126.04033 * 180.16520 * 18 17 16 34 34 H 1.07998 * 125.90099 * 179.71291 * 19 18 17 35 35 H 1.08999 * 110.41133 * 201.79165 * 21 13 12 36 36 H 1.09001 * 110.41003 * 79.35561 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.4342 -2.5997 1.1689 11 6 0.3849 -2.6178 -1.2704 12 6 0.9178 -3.8657 -2.0067 13 7 2.3140 -4.0191 -1.5179 14 6 2.7937 -5.3933 -1.7165 15 6 3.0992 -5.6176 -3.1988 16 7 3.5783 -6.9879 -3.3967 17 6 3.0543 -7.8972 -4.2450 18 6 3.7815 -9.0329 -4.1328 19 6 4.7781 -8.8131 -3.1764 20 7 4.6572 -7.5875 -2.7345 21 6 2.2350 -3.6865 -0.0722 22 1 -0.4849 0.8401 -0.0004 23 1 -0.2327 -1.9035 1.2436 24 1 -0.6629 -2.7545 -1.0032 25 1 0.5035 -1.7313 -1.8934 26 1 0.3255 -4.7428 -1.7457 27 1 0.9060 -3.7050 -3.0847 28 1 3.6996 -5.5501 -1.1310 29 1 2.0260 -6.0964 -1.3934 30 1 2.1933 -5.4609 -3.7843 31 1 3.8669 -4.9146 -3.5219 32 1 2.2082 -7.7450 -4.8988 33 1 3.6183 -9.9487 -4.6815 34 1 5.5191 -9.5311 -2.8574 35 1 3.2146 -3.3920 0.3043 36 1 1.8492 -4.5352 0.4926 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592150289.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:09 Heat of formation + Delta-G solvation = 16.244538 kcal Electronic energy + Delta-G solvation = -18401.429701 eV Core-core repulsion = 15500.572286 eV Total energy + Delta-G solvation = -2900.857415 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.98756 -40.14965 -37.07749 -34.62555 -34.16023 -31.78306 -30.83514 -29.85275 -28.48257 -26.31673 -24.26851 -22.06610 -21.93567 -21.45981 -21.12315 -19.04839 -18.15023 -17.11191 -16.85468 -16.37156 -16.11734 -15.71227 -15.24675 -15.20394 -14.45163 -14.30098 -14.03569 -13.89224 -13.62470 -13.45864 -13.23225 -12.85603 -12.80896 -12.47230 -12.34833 -12.13233 -12.03483 -11.88478 -11.48026 -10.96701 -10.60280 -10.38059 -10.14681 -9.52575 -9.45583 -8.19284 -6.32058 1.03829 1.42988 1.43515 1.51350 1.59523 2.01064 2.41240 2.92086 3.12897 3.55860 3.90118 3.94969 4.03779 4.11219 4.25978 4.29011 4.32804 4.44812 4.53219 4.55924 4.78389 4.79994 4.88472 4.94295 5.02741 5.19532 5.20783 5.34244 5.65472 5.75802 5.78462 5.88230 6.04987 6.18524 6.22367 6.72083 6.83235 7.35676 7.43771 8.86450 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.041350 B = 0.004487 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.979349 B = 6238.276246 C = 6411.931619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.029 3.971 3 Si 0.957 3.043 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.050 0.950 9 C 0.231 3.769 10 O -0.604 6.604 11 C -0.113 4.113 12 C 0.037 3.963 13 N -0.503 5.503 14 C 0.046 3.954 15 C 0.147 3.853 16 N -0.380 5.380 17 C 0.052 3.948 18 C -0.285 4.285 19 C 0.034 3.966 20 N -0.345 5.345 21 C 0.063 3.937 22 H 0.268 0.732 23 H 0.378 0.622 24 H 0.043 0.957 25 H 0.052 0.948 26 H 0.045 0.955 27 H 0.097 0.903 28 H 0.068 0.932 29 H 0.035 0.965 30 H 0.121 0.879 31 H 0.088 0.912 32 H 0.206 0.794 33 H 0.171 0.829 34 H 0.204 0.796 35 H 0.068 0.932 36 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.740 -13.632 -9.874 17.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.171 4.171 3 Si 0.783 3.217 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.068 0.932 9 C 0.191 3.809 10 O -0.412 6.412 11 C -0.152 4.152 12 C -0.090 4.090 13 N -0.228 5.228 14 C -0.083 4.083 15 C 0.025 3.975 16 N -0.163 5.163 17 C -0.094 4.094 18 C -0.315 4.315 19 C -0.151 4.151 20 N -0.167 5.167 21 C -0.065 4.065 22 H 0.078 0.922 23 H 0.227 0.773 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.115 0.885 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.139 0.861 31 H 0.107 0.893 32 H 0.223 0.777 33 H 0.189 0.811 34 H 0.221 0.779 35 H 0.086 0.914 36 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 3.749 -12.657 -9.247 16.117 hybrid contribution -0.855 0.420 0.120 0.960 sum 2.895 -12.238 -9.127 15.538 Atomic orbital electron populations 1.69760 1.06668 1.28089 1.50893 1.25632 0.95813 1.02028 0.93659 0.85637 0.78471 0.79057 0.78569 1.19846 1.20532 1.20276 1.21813 0.93236 0.91898 1.51323 0.93187 1.19522 0.87092 0.91986 0.82265 1.86080 1.52148 1.55502 1.47487 1.22628 0.97665 0.96530 0.98358 1.23240 0.87959 0.97128 1.00673 1.65223 1.21922 1.22038 1.13598 1.22335 1.00163 0.89049 0.96798 1.21575 1.01330 0.77926 0.96621 1.48854 1.23944 1.11976 1.31563 1.23273 1.00668 0.89552 0.95937 1.21886 1.01056 1.01159 1.07361 1.24446 1.00218 0.93941 0.96537 1.77343 1.06959 1.10890 1.21495 1.22789 0.99185 0.96311 0.88251 0.92240 0.77267 0.93814 0.92953 0.93679 0.88511 0.91309 0.94717 0.86112 0.89345 0.77745 0.81113 0.77906 0.91396 0.95073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.96 10.81 21.45 0.23 -48.73 16 2 C 0.03 1.52 5.02 84.66 0.43 1.95 16 3 Si 0.96 42.83 29.54 68.60 2.03 44.85 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.54 -29.78 8.10 25.60 0.21 -29.57 16 8 H 0.05 2.78 7.53 -2.91 -0.02 2.76 16 9 C 0.23 11.61 1.05 -10.65 -0.01 11.60 16 10 O -0.60 -32.08 12.94 -148.98 -1.93 -34.01 16 11 C -0.11 -5.13 5.55 31.49 0.17 -4.95 16 12 C 0.04 1.32 5.93 86.42 0.51 1.83 16 13 N -0.50 -18.69 5.34 -881.04 -4.70 -23.39 16 14 C 0.05 1.42 5.02 86.30 0.43 1.85 16 15 C 0.15 3.62 6.62 86.38 0.57 4.20 16 16 N -0.38 -9.54 3.68 -348.05 -1.28 -10.82 16 17 C 0.05 0.97 11.45 83.54 0.96 1.93 16 18 C -0.29 -5.20 10.80 21.99 0.24 -4.96 16 19 C 0.03 0.74 12.03 85.24 1.03 1.77 16 20 N -0.34 -9.86 12.42 -57.02 -0.71 -10.57 16 21 C 0.06 2.77 5.74 86.45 0.50 3.27 16 22 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 23 H 0.38 20.32 7.32 -74.06 -0.54 19.78 16 24 H 0.04 2.00 7.98 -2.39 -0.02 1.98 16 25 H 0.05 2.60 7.23 -2.39 -0.02 2.58 16 26 H 0.04 1.47 7.75 -2.38 -0.02 1.45 16 27 H 0.10 2.86 7.86 -2.39 -0.02 2.84 16 28 H 0.07 2.34 8.08 -2.39 -0.02 2.32 16 29 H 0.03 1.08 7.77 -2.39 -0.02 1.06 16 30 H 0.12 2.31 7.40 -2.39 -0.02 2.30 16 31 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.21 2.21 8.06 -2.91 -0.02 2.19 16 33 H 0.17 2.07 8.06 -2.91 -0.02 2.04 16 34 H 0.20 3.05 8.06 -2.91 -0.02 3.03 16 35 H 0.07 3.10 7.67 -2.39 -0.02 3.08 16 36 H 0.03 1.35 7.94 -2.39 -0.02 1.34 16 Total: -1.00 -63.42 298.51 -0.80 -64.22 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: 0.53 Total: 29.55 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: 5.03 Total: -11.10 kcal Atomic # 7 Polarization: -87.06 SS G_CDS: -6.46 Total: -93.52 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -1.93 Total: -34.01 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -63.42 -0.80 -64.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150289.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.468 kcal (2) G-P(sol) polarization free energy of solvation -63.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds