Wall clock time and date at job start Sun Mar 29 2020 22:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99949 * 2 1 4 4 H 1.48500 * 109.47223 * 269.99473 * 3 2 1 5 5 H 1.48505 * 109.47131 * 29.99865 * 3 2 1 6 6 H 1.48504 * 109.47237 * 149.99471 * 3 2 1 7 7 C 1.37875 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00041 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00131 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47201 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.46937 * 179.97438 * 10 9 7 12 12 C 1.35317 * 125.86490 * 125.29432 * 11 10 9 13 13 C 1.35347 * 106.17369 * 180.18655 * 12 11 10 14 14 C 1.50701 * 126.75256 * 179.85608 * 13 12 11 15 15 C 1.52997 * 109.47348 * 124.70953 * 14 13 12 16 16 H 1.08993 * 109.47194 * 304.99609 * 15 14 13 17 17 O 1.42906 * 109.46972 * 65.00309 * 15 14 13 18 18 C 1.53006 * 109.47127 * 184.99767 * 15 14 13 19 19 C 1.52997 * 117.50138 * 248.62630 * 18 15 14 20 20 C 1.52993 * 117.49973 * 180.02562 * 18 15 14 21 21 N 1.33772 * 106.49821 * 359.58881 * 13 12 11 22 22 N 1.28638 * 108.88520 * 0.26374 * 21 13 12 23 23 H 0.97005 * 120.00350 * 0.02562 * 1 2 3 24 24 H 1.08991 * 109.47611 * 59.99550 * 9 7 2 25 25 H 1.09008 * 109.46717 * 299.99769 * 9 7 2 26 26 H 1.09000 * 109.47242 * 59.99931 * 10 9 7 27 27 H 1.08999 * 109.47120 * 299.99339 * 10 9 7 28 28 H 1.08003 * 126.91367 * 0.03971 * 12 11 10 29 29 H 1.09002 * 109.46894 * 4.70864 * 14 13 12 30 30 H 1.09001 * 109.46755 * 244.71489 * 14 13 12 31 31 H 0.96696 * 113.99911 * 59.99963 * 17 15 14 32 32 H 1.09001 * 115.54721 * 34.33224 * 18 15 14 33 33 H 1.09007 * 117.49860 * 359.97438 * 19 18 15 34 34 H 1.08994 * 117.50266 * 145.02232 * 19 18 15 35 35 H 1.09003 * 117.50052 * 214.98523 * 20 18 15 36 36 H 1.09004 * 117.49957 * 359.97438 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6365 0.0023 11 7 5.4865 -2.6365 0.0022 12 6 6.2793 -3.2693 0.8978 13 6 7.5536 -3.0027 0.5277 14 6 8.8095 -3.4795 1.2107 15 6 9.6927 -4.2135 0.1997 16 1 9.1210 -5.0152 -0.2674 17 8 10.1330 -3.2954 -0.8030 18 6 10.9072 -4.8049 0.9183 19 6 12.2763 -4.1957 0.6100 20 6 11.9183 -5.5826 0.0735 21 7 7.4791 -2.2375 -0.5670 22 7 6.2407 -2.0386 -0.8525 23 1 -0.4851 0.8401 -0.0004 24 1 3.8746 -0.6800 0.8910 25 1 3.8751 -0.6804 -0.8889 26 1 3.6585 -3.1510 -0.8875 27 1 3.6579 -3.1497 0.8925 28 1 5.9596 -3.8652 1.7399 29 1 8.5465 -4.1572 2.0229 30 1 9.3516 -2.6236 1.6129 31 1 10.6495 -2.5542 -0.4581 32 1 10.7282 -5.1524 1.9358 33 1 12.3120 -3.3738 -0.1052 34 1 12.9984 -4.1422 1.4246 35 1 12.4047 -6.4419 0.5351 36 1 11.7181 -5.6732 -0.9942 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594650828.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:55 Heat of formation + Delta-G solvation = 59.735098 kcal Electronic energy + Delta-G solvation = -17742.944155 eV Core-core repulsion = 14843.972632 eV Total energy + Delta-G solvation = -2898.971523 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.81396 -38.99030 -35.49180 -34.93878 -33.00268 -32.37099 -30.39743 -28.98381 -25.79271 -24.60774 -22.66713 -22.13442 -21.32446 -20.61577 -19.96083 -17.45472 -16.89969 -16.29972 -16.04895 -15.67676 -15.21597 -14.48590 -14.31997 -14.15046 -13.67588 -13.25784 -12.84700 -12.71806 -12.26634 -11.84076 -11.72237 -11.51749 -11.25096 -11.06342 -10.73433 -10.69520 -10.57223 -10.34205 -10.24803 -9.99458 -9.95049 -9.50038 -9.39489 -8.77231 -8.69857 -6.21681 -4.24062 2.05292 2.89020 2.93642 3.25060 3.32220 3.37331 3.50027 4.20581 4.32772 4.44153 4.63684 4.68372 4.71396 4.95997 5.08316 5.12929 5.17022 5.19722 5.35648 5.40677 5.52364 5.62943 5.69406 5.74198 5.87006 5.90520 6.01033 6.06054 6.29721 6.48572 6.84213 7.06212 7.10867 7.53957 7.67770 8.26886 8.77448 9.00192 9.38505 10.90429 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.057399 B = 0.003708 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.692727 B = 7549.272594 C = 7767.710107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.076 3.924 3 Si 0.879 3.121 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.531 4.531 8 H 0.077 0.923 9 C -0.020 4.020 10 C 0.121 3.879 11 N -0.275 5.275 12 C -0.057 4.057 13 C -0.036 4.036 14 C -0.055 4.055 15 C 0.144 3.856 16 H 0.099 0.901 17 O -0.541 6.541 18 C -0.192 4.192 19 C -0.178 4.178 20 C -0.172 4.172 21 N -0.261 5.261 22 N -0.083 5.083 23 H 0.267 0.733 24 H 0.023 0.977 25 H 0.032 0.968 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.183 0.817 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.370 0.630 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.549 -10.021 5.078 23.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.127 4.127 3 Si 0.706 3.294 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.569 4.569 8 H 0.095 0.905 9 C -0.058 4.058 10 C 0.002 3.998 11 N -0.068 5.068 12 C -0.210 4.210 13 C -0.176 4.176 14 C -0.095 4.095 15 C 0.084 3.916 16 H 0.117 0.883 17 O -0.346 6.346 18 C -0.210 4.210 19 C -0.215 4.215 20 C -0.209 4.209 21 N -0.126 5.126 22 N -0.063 5.063 23 H 0.077 0.923 24 H 0.041 0.959 25 H 0.051 0.949 26 H 0.113 0.887 27 H 0.118 0.882 28 H 0.200 0.800 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.218 0.782 32 H 0.127 0.873 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 20.040 -9.422 3.402 22.404 hybrid contribution 0.284 0.495 1.551 1.653 sum 20.324 -8.926 4.954 22.744 Atomic orbital electron populations 1.69883 1.06261 1.27361 1.49690 1.24917 0.94739 0.99207 0.93876 0.86779 0.80216 0.83371 0.79015 1.19804 1.21093 1.19102 1.20800 0.88050 0.95053 1.53032 0.90468 1.19855 0.97910 0.89767 0.98268 1.22483 0.69567 1.03393 1.04334 1.47906 1.10488 1.30905 1.17528 1.23369 0.90945 1.06057 1.00586 1.21658 0.94354 1.03684 0.97860 1.20482 0.91548 1.00372 0.97052 1.21291 0.91054 0.91196 0.88024 0.88339 1.86687 1.74426 1.38706 1.34831 1.23211 0.91619 1.05533 1.00680 1.22940 0.97468 0.97492 1.03625 1.22889 1.02835 0.94850 1.00318 1.75108 1.09689 1.14899 1.12951 1.78336 0.96047 1.16829 1.15065 0.92326 0.95885 0.94921 0.88706 0.88242 0.80018 0.89607 0.90161 0.78220 0.87268 0.88114 0.88989 0.89102 0.88418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.63 13.96 55.43 0.77 -25.86 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 7 C -0.53 -14.32 9.66 -34.44 -0.33 -14.66 16 8 H 0.08 2.17 7.99 -52.48 -0.42 1.75 16 9 C -0.02 -0.46 4.17 -27.88 -0.12 -0.57 16 10 C 0.12 2.24 6.39 -4.04 -0.03 2.21 16 11 N -0.28 -5.01 3.44 -61.26 -0.21 -5.22 16 12 C -0.06 -0.84 11.49 -17.05 -0.20 -1.04 16 13 C -0.04 -0.54 6.46 -82.78 -0.53 -1.08 16 14 C -0.06 -0.56 5.46 -27.88 -0.15 -0.72 16 15 C 0.14 1.46 3.32 -26.73 -0.09 1.38 16 16 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 17 O -0.54 -6.57 11.67 -35.23 -0.41 -6.99 16 18 C -0.19 -1.50 5.71 -90.62 -0.52 -2.01 16 19 C -0.18 -1.30 9.73 -26.76 -0.26 -1.56 16 20 C -0.17 -1.34 10.19 -26.76 -0.27 -1.62 16 21 N -0.26 -4.92 11.70 33.29 0.39 -4.53 16 22 N -0.08 -1.71 12.91 60.35 0.78 -0.93 16 23 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.02 0.55 7.20 -51.93 -0.37 0.17 16 25 H 0.03 0.79 7.55 -51.92 -0.39 0.40 16 26 H 0.09 1.70 8.14 -51.93 -0.42 1.27 16 27 H 0.10 1.58 8.07 -51.93 -0.42 1.17 16 28 H 0.18 1.91 8.06 -52.48 -0.42 1.49 16 29 H 0.09 0.66 8.12 -51.93 -0.42 0.24 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.37 3.49 7.57 45.56 0.34 3.83 16 32 H 0.11 0.72 8.11 -51.93 -0.42 0.30 16 33 H 0.10 0.73 6.38 -51.93 -0.33 0.40 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 306.15 15.07 4.61 4.61 Total: -1.00 -32.58 306.15 -5.89 -38.47 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -4.56 Total: 1.13 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -2.59 Total: -17.62 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 1.73 Total: -36.54 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: -0.41 Total: -6.99 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.58 -5.89 -38.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594650828.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.207 kcal (2) G-P(sol) polarization free energy of solvation -32.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds