Wall clock time and date at job start Sun Mar 29 2020 22:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99949 * 2 1 4 4 H 1.48500 * 109.47223 * 269.99473 * 3 2 1 5 5 H 1.48505 * 109.47131 * 29.99865 * 3 2 1 6 6 H 1.48504 * 109.47237 * 149.99471 * 3 2 1 7 7 C 1.37875 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00041 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00131 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47201 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.46937 * 179.97438 * 10 9 7 12 12 C 1.35317 * 125.86490 * 125.29432 * 11 10 9 13 13 C 1.35347 * 106.17369 * 180.18655 * 12 11 10 14 14 C 1.50701 * 126.75256 * 179.85608 * 13 12 11 15 15 C 1.52997 * 109.47348 * 124.70953 * 14 13 12 16 16 H 1.08993 * 109.47194 * 304.99609 * 15 14 13 17 17 O 1.42906 * 109.46972 * 65.00309 * 15 14 13 18 18 C 1.53006 * 109.47127 * 184.99767 * 15 14 13 19 19 C 1.52997 * 117.50138 * 248.62630 * 18 15 14 20 20 C 1.52993 * 117.49973 * 180.02562 * 18 15 14 21 21 N 1.33772 * 106.49821 * 359.58881 * 13 12 11 22 22 N 1.28638 * 108.88520 * 0.26374 * 21 13 12 23 23 H 0.97005 * 120.00350 * 0.02562 * 1 2 3 24 24 H 1.08991 * 109.47611 * 59.99550 * 9 7 2 25 25 H 1.09008 * 109.46717 * 299.99769 * 9 7 2 26 26 H 1.09000 * 109.47242 * 59.99931 * 10 9 7 27 27 H 1.08999 * 109.47120 * 299.99339 * 10 9 7 28 28 H 1.08003 * 126.91367 * 0.03971 * 12 11 10 29 29 H 1.09002 * 109.46894 * 4.70864 * 14 13 12 30 30 H 1.09001 * 109.46755 * 244.71489 * 14 13 12 31 31 H 0.96696 * 113.99911 * 59.99963 * 17 15 14 32 32 H 1.09001 * 115.54721 * 34.33224 * 18 15 14 33 33 H 1.09007 * 117.49860 * 359.97438 * 19 18 15 34 34 H 1.08994 * 117.50266 * 145.02232 * 19 18 15 35 35 H 1.09003 * 117.50052 * 214.98523 * 20 18 15 36 36 H 1.09004 * 117.49957 * 359.97438 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6365 0.0023 11 7 5.4865 -2.6365 0.0022 12 6 6.2793 -3.2693 0.8978 13 6 7.5536 -3.0027 0.5277 14 6 8.8095 -3.4795 1.2107 15 6 9.6927 -4.2135 0.1997 16 1 9.1210 -5.0152 -0.2674 17 8 10.1330 -3.2954 -0.8030 18 6 10.9072 -4.8049 0.9183 19 6 12.2763 -4.1957 0.6100 20 6 11.9183 -5.5826 0.0735 21 7 7.4791 -2.2375 -0.5670 22 7 6.2407 -2.0386 -0.8525 23 1 -0.4851 0.8401 -0.0004 24 1 3.8746 -0.6800 0.8910 25 1 3.8751 -0.6804 -0.8889 26 1 3.6585 -3.1510 -0.8875 27 1 3.6579 -3.1497 0.8925 28 1 5.9596 -3.8652 1.7399 29 1 8.5465 -4.1572 2.0229 30 1 9.3516 -2.6236 1.6129 31 1 10.6495 -2.5542 -0.4581 32 1 10.7282 -5.1524 1.9358 33 1 12.3120 -3.3738 -0.1052 34 1 12.9984 -4.1422 1.4246 35 1 12.4047 -6.4419 0.5351 36 1 11.7181 -5.6732 -0.9942 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594650828.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:55 Heat of formation + Delta-G solvation = 36.764173 kcal Electronic energy + Delta-G solvation = -17743.940249 eV Core-core repulsion = 14843.972632 eV Total energy + Delta-G solvation = -2899.967617 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.10278 -39.71479 -36.82907 -35.89414 -34.80258 -33.56735 -32.11749 -30.04661 -27.52638 -25.48997 -23.82872 -23.25361 -22.60814 -21.42009 -21.22129 -19.29728 -17.86386 -17.43913 -17.39029 -16.68912 -16.27524 -16.10032 -15.54114 -15.27641 -14.96208 -14.80069 -14.26474 -13.79165 -13.46874 -13.15213 -13.01888 -12.57779 -12.50699 -12.28988 -12.17098 -12.01139 -11.92697 -11.67213 -11.53303 -11.31178 -10.99561 -10.89613 -10.85441 -10.72779 -9.93833 -8.38560 -6.43953 0.79634 1.29794 1.32857 1.42135 1.61277 1.66857 2.27471 2.90942 2.97109 3.43710 3.52815 3.83390 3.85053 4.04255 4.10661 4.15507 4.17246 4.24539 4.46320 4.49423 4.50973 4.62903 4.76631 4.85543 4.98040 5.05599 5.10133 5.21959 5.27769 5.32282 5.33478 5.37065 5.47225 5.80168 6.11984 6.62990 6.94693 7.21764 7.69438 8.76651 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.057399 B = 0.003708 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.692727 B = 7549.272594 C = 7767.710107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.021 3.979 3 Si 0.938 3.062 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.531 4.531 8 H 0.057 0.943 9 C -0.013 4.013 10 C 0.132 3.868 11 N -0.285 5.285 12 C -0.046 4.046 13 C -0.039 4.039 14 C -0.050 4.050 15 C 0.144 3.856 16 H 0.082 0.918 17 O -0.567 6.567 18 C -0.185 4.185 19 C -0.175 4.175 20 C -0.181 4.181 21 N -0.285 5.285 22 N -0.139 5.139 23 H 0.270 0.730 24 H 0.019 0.981 25 H 0.017 0.983 26 H 0.095 0.905 27 H 0.130 0.870 28 H 0.229 0.771 29 H 0.121 0.879 30 H 0.090 0.910 31 H 0.379 0.621 32 H 0.131 0.869 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.423 -10.771 7.042 25.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.178 4.178 3 Si 0.763 3.237 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.569 4.569 8 H 0.075 0.925 9 C -0.051 4.051 10 C 0.012 3.988 11 N -0.078 5.078 12 C -0.198 4.198 13 C -0.179 4.179 14 C -0.089 4.089 15 C 0.085 3.915 16 H 0.100 0.900 17 O -0.374 6.374 18 C -0.203 4.203 19 C -0.212 4.212 20 C -0.218 4.218 21 N -0.150 5.150 22 N -0.117 5.117 23 H 0.079 0.921 24 H 0.038 0.962 25 H 0.035 0.965 26 H 0.113 0.887 27 H 0.148 0.852 28 H 0.246 0.754 29 H 0.139 0.861 30 H 0.108 0.892 31 H 0.228 0.772 32 H 0.148 0.852 33 H 0.114 0.886 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 21.936 -10.168 5.357 24.764 hybrid contribution -0.252 0.625 0.946 1.162 sum 21.683 -9.543 6.303 24.515 Atomic orbital electron populations 1.69995 1.07777 1.28354 1.51558 1.25722 0.95442 1.02689 0.93971 0.85842 0.79165 0.79687 0.79018 1.19739 1.20225 1.18503 1.21112 0.90162 0.94165 1.51468 0.92508 1.19651 0.95306 0.92988 0.97174 1.22243 0.70232 1.00364 1.05963 1.47832 1.10169 1.31607 1.18201 1.24191 0.90363 1.04808 1.00407 1.22457 0.96396 1.02339 0.96699 1.20667 0.89531 1.01365 0.97386 1.21266 0.91989 0.90517 0.87742 0.90046 1.86653 1.74849 1.39533 1.36382 1.23122 0.90637 1.05380 1.01174 1.23011 0.97441 0.96878 1.03824 1.22921 1.03427 0.95852 0.99574 1.75056 1.09263 1.15951 1.14698 1.78328 0.96942 1.19396 1.17080 0.92110 0.96218 0.96503 0.88655 0.85197 0.75444 0.86072 0.89170 0.77173 0.85161 0.88594 0.87462 0.87730 0.90138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.49 13.96 21.45 0.30 -56.19 16 2 C 0.02 1.18 5.47 84.65 0.46 1.64 16 3 Si 0.94 44.60 27.47 68.60 1.88 46.49 16 4 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.26 -12.04 6.54 99.48 0.65 -11.39 16 7 C -0.53 -28.72 9.66 25.60 0.25 -28.47 16 8 H 0.06 3.23 7.99 -2.91 -0.02 3.21 16 9 C -0.01 -0.59 4.17 29.85 0.12 -0.46 16 10 C 0.13 4.66 6.39 86.38 0.55 5.22 16 11 N -0.29 -9.93 3.44 -347.73 -1.20 -11.12 16 12 C -0.05 -1.20 11.49 83.49 0.96 -0.24 16 13 C -0.04 -1.07 6.46 41.60 0.27 -0.80 16 14 C -0.05 -0.86 5.46 29.85 0.16 -0.70 16 15 C 0.14 2.65 3.32 30.60 0.10 2.76 16 16 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 17 O -0.57 -13.39 11.67 -148.98 -1.74 -15.13 16 18 C -0.18 -2.37 5.71 -10.79 -0.06 -2.43 16 19 C -0.17 -2.14 9.73 30.58 0.30 -1.84 16 20 C -0.18 -2.51 10.19 30.58 0.31 -2.20 16 21 N -0.28 -10.55 11.70 -48.60 -0.57 -11.12 16 22 N -0.14 -5.68 12.91 37.02 0.48 -5.20 16 23 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 24 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 25 H 0.02 0.81 7.55 -2.38 -0.02 0.80 16 26 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 27 H 0.13 3.77 8.07 -2.39 -0.02 3.76 16 28 H 0.23 3.58 8.06 -2.91 -0.02 3.55 16 29 H 0.12 1.23 8.12 -2.39 -0.02 1.21 16 30 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.38 6.87 7.57 -74.06 -0.56 6.31 16 32 H 0.13 1.16 8.11 -2.39 -0.02 1.14 16 33 H 0.10 1.27 6.38 -2.38 -0.02 1.25 16 34 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -71.83 306.15 3.05 -68.78 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 0.46 Total: 11.04 kcal Atomic # 6 Polarization: -30.97 SS G_CDS: 3.43 Total: -27.54 kcal Atomic # 7 Polarization: -82.64 SS G_CDS: -0.99 Total: -83.63 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -1.74 Total: -15.13 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.88 Total: 46.49 kcal Total: -71.83 3.05 -68.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594650828.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.549 kcal (2) G-P(sol) polarization free energy of solvation -71.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds