Wall clock time and date at job start Sun Mar 29 2020 23:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29945 * 126.28229 * 2 1 4 4 O 1.21300 * 110.25206 * 180.02562 * 3 2 1 5 5 C 1.33650 * 109.80958 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.55024 * 179.97438 * 5 4 3 7 7 N 1.46903 * 109.47326 * 270.02976 * 6 5 4 8 8 C 1.46846 * 110.99807 * 293.95835 * 7 6 5 9 9 C 1.53037 * 109.52395 * 174.16000 * 8 7 6 10 10 C 1.53127 * 109.27590 * 59.17726 * 9 8 7 11 11 C 1.53117 * 109.16084 * 302.34445 * 10 9 8 12 12 H 1.09006 * 109.50629 * 297.68137 * 11 10 9 13 13 C 1.50696 * 109.50249 * 177.59707 * 11 10 9 14 14 H 1.08007 * 119.99872 * 245.67304 * 13 11 10 15 15 C 1.37872 * 120.00356 * 65.68115 * 13 11 10 16 16 N 1.31513 * 120.00296 * 198.10999 * 15 13 11 17 17 Si 1.86805 * 119.99826 * 18.10145 * 15 13 11 18 18 H 1.48503 * 109.47067 * 180.02562 * 17 15 13 19 19 H 1.48491 * 109.47135 * 60.00460 * 17 15 13 20 20 H 1.48497 * 109.47041 * 300.00337 * 17 15 13 21 21 C 1.46847 * 110.99990 * 169.74564 * 7 6 5 22 22 N 1.31133 * 106.89481 * 0.23386 * 5 4 3 23 23 H 1.09004 * 109.47145 * 89.97295 * 1 2 3 24 24 H 1.09007 * 109.46680 * 209.97121 * 1 2 3 25 25 H 1.08993 * 109.47700 * 329.97219 * 1 2 3 26 26 H 1.09008 * 109.46542 * 150.03404 * 6 5 4 27 27 H 1.08998 * 109.47492 * 30.03212 * 6 5 4 28 28 H 1.09001 * 109.46668 * 54.14311 * 8 7 6 29 29 H 1.09004 * 109.46393 * 294.16966 * 8 7 6 30 30 H 1.09003 * 109.50460 * 299.24201 * 9 8 7 31 31 H 1.08996 * 109.54131 * 179.13750 * 9 8 7 32 32 H 1.09005 * 109.52061 * 182.44708 * 10 9 8 33 33 H 1.08990 * 109.57699 * 62.28552 * 10 9 8 34 34 H 0.96999 * 119.99781 * 354.61237 * 16 15 13 35 35 H 1.09000 * 109.45992 * 65.82627 * 21 7 6 36 36 H 1.08996 * 109.46126 * 305.85467 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4418 0.7125 -0.0005 5 6 3.5299 -0.6210 -0.0003 6 6 4.7970 -1.4367 -0.0014 7 7 5.2079 -1.7015 -1.3867 8 6 4.2355 -2.5656 -2.0679 9 6 4.6173 -2.7009 -3.5437 10 6 6.0226 -3.2998 -3.6494 11 6 7.0081 -2.4064 -2.8910 12 1 7.0331 -1.4189 -3.3520 13 6 8.3837 -3.0198 -2.9402 14 1 8.8501 -3.3733 -2.0324 15 6 9.0470 -3.1295 -4.1438 16 7 10.0595 -3.9602 -4.2634 17 14 8.5074 -2.0982 -5.6050 18 1 9.3753 -2.4003 -6.7715 19 1 8.6207 -0.6577 -5.2630 20 1 7.0969 -2.4175 -5.9422 21 6 6.5569 -2.2797 -1.4341 22 7 2.3030 -1.0840 -0.0048 23 1 -0.3634 0.0005 -1.0277 24 1 -0.3633 -0.8903 0.5134 25 1 -0.3634 0.8896 0.5142 26 1 4.6210 -2.3819 0.5124 27 1 5.5846 -0.8853 0.5121 28 1 3.2411 -2.1262 -1.9889 29 1 4.2354 -3.5506 -1.6012 30 1 4.6044 -1.7179 -4.0146 31 1 3.9045 -3.3546 -4.0463 32 1 6.3160 -3.3577 -4.6977 33 1 6.0275 -4.2990 -3.2141 34 1 10.3896 -4.4375 -3.4862 35 1 6.5458 -3.2660 -0.9703 36 1 7.2486 -1.6326 -0.8947 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595612032.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:36:32 Heat of formation + Delta-G solvation = 63.724615 kcal Electronic energy + Delta-G solvation = -18644.950078 eV Core-core repulsion = 15746.151553 eV Total energy + Delta-G solvation = -2898.798524 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.57002 -38.64628 -36.09254 -34.57681 -32.83771 -31.83077 -30.23582 -29.33765 -27.27881 -24.68226 -23.66930 -22.70365 -21.66580 -20.63952 -18.85546 -18.14918 -17.55812 -17.28802 -15.54732 -15.30346 -14.69434 -14.18337 -14.02469 -13.76390 -13.57987 -13.28012 -12.95841 -12.71615 -12.45014 -12.37199 -11.95940 -11.81492 -11.44690 -11.24493 -11.04707 -10.70904 -10.55319 -10.13911 -10.02945 -9.85740 -9.64256 -9.35599 -8.77558 -8.17884 -8.11518 -6.45867 -4.06800 1.11414 2.15495 2.80777 3.40952 3.46937 3.56954 3.63947 3.97422 4.24258 4.50452 4.84282 5.07687 5.16317 5.23401 5.25007 5.31068 5.45277 5.50911 5.57282 5.77871 5.80229 5.94383 5.97060 6.07030 6.23064 6.32998 6.42883 6.58385 6.78420 6.87784 7.22007 7.32590 7.34488 7.57701 8.14929 8.16095 8.36875 8.89633 9.61586 10.94573 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.041060 B = 0.005061 C = 0.004961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.758626 B = 5531.620167 C = 5642.389029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.163 3.837 3 N -0.391 5.391 4 O 0.083 5.917 5 C 0.208 3.792 6 C 0.140 3.860 7 N -0.538 5.538 8 C 0.058 3.942 9 C -0.119 4.119 10 C -0.125 4.125 11 C 0.028 3.972 12 H 0.030 0.970 13 C -0.601 4.601 14 H 0.054 0.946 15 C 0.033 3.967 16 N -0.907 5.907 17 Si 1.046 2.954 18 H -0.288 1.288 19 H -0.282 1.282 20 H -0.273 1.273 21 C 0.079 3.921 22 N -0.486 5.486 23 H 0.087 0.913 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.112 0.888 28 H 0.066 0.934 29 H 0.034 0.966 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.267 0.733 35 H 0.031 0.969 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.781 5.559 7.915 18.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.110 4.110 3 N -0.100 5.100 4 O 0.026 5.974 5 C -0.013 4.013 6 C 0.010 3.990 7 N -0.265 5.265 8 C -0.069 4.069 9 C -0.157 4.157 10 C -0.163 4.163 11 C 0.008 3.992 12 H 0.048 0.952 13 C -0.639 4.639 14 H 0.073 0.927 15 C -0.172 4.172 16 N -0.542 5.542 17 Si 0.875 3.125 18 H -0.214 1.214 19 H -0.209 1.209 20 H -0.200 1.200 21 C -0.047 4.047 22 N -0.221 5.221 23 H 0.106 0.894 24 H 0.108 0.892 25 H 0.103 0.897 26 H 0.098 0.902 27 H 0.130 0.870 28 H 0.084 0.916 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.093 6.776 6.064 18.484 hybrid contribution -0.181 -1.110 2.094 2.377 sum -16.274 5.666 8.158 19.065 Atomic orbital electron populations 1.20099 0.83178 1.04381 1.04198 1.25865 1.00485 0.83765 1.00866 1.74620 0.89566 1.24096 1.21698 1.85299 1.22035 1.24902 1.65166 1.28803 0.96667 0.81977 0.93877 1.20564 0.88237 0.96603 0.93611 1.62052 1.04548 1.48877 1.10977 1.22127 0.94748 0.94488 0.95581 1.21672 0.98693 1.01036 0.94304 1.22133 0.92864 0.99530 1.01764 1.19004 0.94698 0.95497 0.89961 0.95152 1.21918 1.00812 1.44747 0.96394 0.92743 1.25740 0.95213 0.95463 1.00811 1.70871 1.28123 1.22884 1.32275 0.84018 0.76151 0.76421 0.75886 1.21419 1.20879 1.19979 1.22205 0.85120 0.96453 1.00942 1.71921 0.99815 1.29409 1.20966 0.89443 0.89190 0.89702 0.90217 0.87021 0.91592 0.94762 0.92028 0.92680 0.91912 0.93102 0.92319 0.95112 0.91077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.52 10.51 36.01 0.38 -0.14 16 2 C 0.16 2.15 8.22 -156.38 -1.28 0.87 16 3 N -0.39 -5.74 12.16 30.90 0.38 -5.37 16 4 O 0.08 1.24 11.31 18.08 0.20 1.44 16 5 C 0.21 2.92 7.14 -13.05 -0.09 2.83 16 6 C 0.14 1.83 5.59 -4.98 -0.03 1.81 16 7 N -0.54 -8.91 4.65 -236.11 -1.10 -10.01 16 8 C 0.06 0.96 5.31 -3.83 -0.02 0.94 16 9 C -0.12 -2.11 6.09 -26.65 -0.16 -2.27 16 10 C -0.13 -2.65 4.97 -26.61 -0.13 -2.78 16 11 C 0.03 0.63 1.84 -91.69 -0.17 0.47 16 12 H 0.03 0.72 6.79 -51.93 -0.35 0.37 16 13 C -0.60 -16.25 8.82 -34.44 -0.30 -16.55 16 14 H 0.05 1.57 7.99 -52.48 -0.42 1.15 16 15 C 0.03 0.92 5.34 -17.82 -0.10 0.83 16 16 N -0.91 -27.43 13.69 55.43 0.76 -26.67 16 17 Si 1.05 24.99 26.41 -169.99 -4.49 20.50 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.27 -6.04 5.57 56.52 0.32 -5.73 16 21 C 0.08 1.49 4.68 -3.83 -0.02 1.48 16 22 N -0.49 -6.95 10.67 -9.87 -0.11 -7.06 16 23 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.08 0.96 8.12 -51.92 -0.42 0.54 16 27 H 0.11 1.23 7.98 -51.93 -0.41 0.82 16 28 H 0.07 1.05 6.45 -51.93 -0.33 0.72 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 1.41 4.86 -51.93 -0.25 1.16 16 33 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.27 8.01 8.73 -40.82 -0.36 7.66 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 1.30 8.01 -51.93 -0.42 0.89 16 LS Contribution 291.26 15.07 4.39 4.39 Total: -1.00 -30.53 291.26 -7.12 -37.65 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -5.23 Total: -2.35 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -1.93 Total: -12.53 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: -0.07 Total: -49.10 kcal Atomic # 8 Polarization: 1.24 SS G_CDS: 0.20 Total: 1.44 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -4.49 Total: 20.50 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.53 -7.12 -37.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595612032.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.376 kcal (2) G-P(sol) polarization free energy of solvation -30.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds