Wall clock time and date at job start Sun Mar 29 2020 23:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31134 * 126.54812 * 2 1 4 4 C 1.34500 * 105.61081 * 180.12364 * 3 2 1 5 5 C 1.50703 * 126.28332 * 179.90761 * 4 3 2 6 6 N 1.46907 * 109.46848 * 269.71585 * 5 4 3 7 7 C 1.46854 * 110.99760 * 293.95332 * 6 5 4 8 8 C 1.53038 * 109.51962 * 174.16278 * 7 6 5 9 9 C 1.53114 * 109.27998 * 59.18258 * 8 7 6 10 10 C 1.53125 * 109.15968 * 302.34482 * 9 8 7 11 11 H 1.09003 * 109.49727 * 297.67230 * 10 9 8 12 12 C 1.50702 * 109.50387 * 177.59658 * 10 9 8 13 13 H 1.07997 * 119.99836 * 245.37861 * 12 10 9 14 14 C 1.37875 * 119.99840 * 65.38005 * 12 10 9 15 15 N 1.31518 * 119.99571 * 185.17229 * 14 12 10 16 16 Si 1.86795 * 120.00340 * 5.16679 * 14 12 10 17 17 H 1.48505 * 109.47378 * 270.00021 * 16 14 12 18 18 H 1.48503 * 109.47382 * 150.00083 * 16 14 12 19 19 H 1.48500 * 109.47303 * 30.00320 * 16 14 12 20 20 C 1.46848 * 110.99835 * 169.74925 * 6 5 4 21 21 N 1.29938 * 107.42603 * 359.64625 * 4 3 2 22 22 O 1.21302 * 110.25255 * 0.22007 * 21 4 3 23 23 H 1.09000 * 109.46865 * 180.24917 * 1 2 3 24 24 H 1.09001 * 109.47292 * 300.24653 * 1 2 3 25 25 H 1.09000 * 109.47775 * 60.24820 * 1 2 3 26 26 H 1.08991 * 109.47148 * 149.71765 * 5 4 3 27 27 H 1.09002 * 109.47461 * 29.71208 * 5 4 3 28 28 H 1.09001 * 109.46327 * 54.14972 * 7 6 5 29 29 H 1.09001 * 109.45289 * 294.17362 * 7 6 5 30 30 H 1.08994 * 109.50425 * 299.23696 * 8 7 6 31 31 H 1.09002 * 109.53327 * 179.13982 * 8 7 6 32 32 H 1.08999 * 109.52465 * 182.43962 * 9 8 7 33 33 H 1.09006 * 109.57785 * 62.27664 * 9 8 7 34 34 H 0.96993 * 120.00348 * 354.98893 * 15 14 12 35 35 H 1.08995 * 109.46210 * 65.81866 * 20 6 5 36 36 H 1.08998 * 109.45841 * 305.85051 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0535 0.0000 4 6 3.5441 0.5728 -0.0028 5 6 4.8111 1.3888 -0.0059 6 7 5.2233 1.6478 -1.3920 7 6 5.6081 0.4022 -2.0680 8 6 5.8905 0.6880 -3.5447 9 6 7.0174 1.7189 -3.6536 10 6 6.6114 2.9888 -2.9004 11 1 5.7233 3.4184 -3.3639 12 6 7.7391 3.9870 -2.9525 13 1 8.2501 4.2723 -2.0449 14 6 8.1185 4.5361 -4.1590 15 7 9.1665 5.3283 -4.2204 16 14 7.1441 4.1547 -5.7064 17 1 7.7080 2.9471 -6.3615 18 1 7.2252 5.3073 -6.6392 19 1 5.7243 3.9064 -5.3488 20 6 6.3081 2.6363 -1.4424 21 7 3.4645 -0.7241 0.0033 22 8 2.3029 -1.0735 0.0051 23 1 -0.3633 -1.0277 0.0045 24 1 -0.3634 0.5177 0.8878 25 1 -0.3635 0.5099 -0.8922 26 1 5.5982 0.8395 0.5106 27 1 4.6346 2.3360 0.5036 28 1 4.7965 -0.3209 -1.9868 29 1 6.5044 -0.0036 -1.5987 30 1 4.9907 1.0811 -4.0178 31 1 6.1910 -0.2335 -4.0433 32 1 7.1924 1.9578 -4.7025 33 1 7.9287 1.3115 -3.2158 34 1 9.6290 5.5846 -3.4072 35 1 7.2009 2.2198 -0.9761 36 1 6.0048 3.5358 -0.9068 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595612364.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:32:03 Heat of formation + Delta-G solvation = 39.189560 kcal Electronic energy + Delta-G solvation = -18634.423553 eV Core-core repulsion = 15734.561109 eV Total energy + Delta-G solvation = -2899.862444 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -46.63539 -40.16284 -37.17395 -35.80015 -34.59529 -33.59714 -32.01607 -29.75772 -28.74385 -26.59486 -24.98059 -24.03190 -22.92703 -22.04249 -20.56171 -19.69921 -19.25958 -18.41852 -17.01524 -16.43129 -16.15048 -15.85578 -15.30086 -15.11996 -14.84854 -14.53140 -14.16137 -14.07659 -13.95863 -13.61392 -13.34813 -12.98540 -12.76868 -12.69464 -12.51865 -12.36803 -12.05933 -11.83274 -11.66485 -11.39505 -11.19592 -10.89664 -10.67682 -10.59003 -9.45789 -8.73264 -6.39583 0.16587 1.13688 1.42090 1.52799 1.70794 1.96490 2.46566 2.56135 2.89712 3.09039 3.10932 3.85751 3.89460 3.99209 4.14743 4.24317 4.31796 4.40409 4.51778 4.60596 4.66153 4.67821 4.69626 4.71568 4.86582 4.91459 5.04420 5.09416 5.14424 5.17260 5.39347 5.65912 5.77823 5.96124 6.03593 6.16080 6.56712 7.18612 7.39107 8.66196 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.038517 B = 0.005076 C = 0.004998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.774300 B = 5515.073412 C = 5601.170361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.185 3.815 3 N -0.504 5.504 4 C 0.177 3.823 5 C 0.143 3.857 6 N -0.541 5.541 7 C 0.064 3.936 8 C -0.112 4.112 9 C -0.119 4.119 10 C 0.019 3.981 11 H 0.029 0.971 12 C -0.590 4.590 13 H 0.021 0.979 14 C -0.022 4.022 15 N -0.948 5.948 16 Si 1.092 2.908 17 H -0.263 1.263 18 H -0.293 1.293 19 H -0.255 1.255 20 C 0.091 3.909 21 N -0.402 5.402 22 O 0.076 5.924 23 H 0.124 0.876 24 H 0.120 0.880 25 H 0.114 0.886 26 H 0.066 0.934 27 H 0.109 0.891 28 H 0.070 0.930 29 H 0.032 0.968 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.046 0.954 33 H 0.045 0.955 34 H 0.252 0.748 35 H 0.021 0.979 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.983 -14.233 7.664 24.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.034 4.034 3 N -0.238 5.238 4 C -0.096 4.096 5 C 0.014 3.986 6 N -0.267 5.267 7 C -0.064 4.064 8 C -0.150 4.150 9 C -0.156 4.156 10 C -0.001 4.001 11 H 0.047 0.953 12 C -0.629 4.629 13 H 0.039 0.961 14 C -0.219 4.219 15 N -0.586 5.586 16 Si 0.915 3.085 17 H -0.189 1.189 18 H -0.220 1.220 19 H -0.179 1.179 20 C -0.036 4.036 21 N -0.111 5.111 22 O 0.016 5.984 23 H 0.142 0.858 24 H 0.138 0.862 25 H 0.133 0.867 26 H 0.084 0.916 27 H 0.127 0.873 28 H 0.089 0.911 29 H 0.051 0.949 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.039 0.961 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.621 -13.875 5.832 23.943 hybrid contribution 1.457 -0.053 2.339 2.756 sum -17.164 -13.928 8.171 23.566 Atomic orbital electron populations 1.20758 0.76209 1.07744 1.06893 1.29935 1.00553 0.79511 0.93414 1.71893 1.00412 1.30165 1.21381 1.25637 0.95536 0.88045 1.00350 1.20268 0.88644 0.98712 0.90988 1.61881 1.39571 1.11336 1.13916 1.22051 0.98763 0.90489 0.95067 1.21619 0.98706 0.99310 0.95335 1.21873 0.97587 0.96496 0.99686 1.19101 0.95195 0.93025 0.92733 0.95332 1.22283 1.19186 1.26565 0.94856 0.96107 1.27139 0.96087 0.93466 1.05236 1.70941 1.19485 1.37361 1.30763 0.83407 0.76369 0.76433 0.72320 1.18869 1.21956 1.17914 1.21847 0.89870 0.93525 0.98377 1.74617 0.98572 1.15787 1.22120 1.85239 1.11107 1.36215 1.65809 0.85780 0.86199 0.86731 0.91598 0.87256 0.91117 0.94933 0.91860 0.89756 0.93601 0.93574 0.93940 0.96079 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.38 10.51 71.24 0.75 0.37 16 2 C 0.19 3.63 8.51 88.38 0.75 4.39 16 3 N -0.50 -13.95 11.55 -303.21 -3.50 -17.45 16 4 C 0.18 5.31 6.85 138.46 0.95 6.26 16 5 C 0.14 4.40 5.59 85.56 0.48 4.88 16 6 N -0.54 -19.49 4.65 -900.91 -4.19 -23.67 16 7 C 0.06 2.16 5.31 86.32 0.46 2.62 16 8 C -0.11 -3.88 6.09 30.64 0.19 -3.69 16 9 C -0.12 -5.07 4.89 30.67 0.15 -4.92 16 10 C 0.02 0.91 1.84 -11.49 -0.02 0.88 16 11 H 0.03 1.42 6.65 -2.39 -0.02 1.41 16 12 C -0.59 -34.07 8.92 25.60 0.23 -33.84 16 13 H 0.02 1.30 7.98 -2.91 -0.02 1.28 16 14 C -0.02 -1.33 5.43 84.65 0.46 -0.87 16 15 N -0.95 -60.69 13.70 21.45 0.29 -60.40 16 16 Si 1.09 52.04 25.30 68.60 1.74 53.78 16 17 H -0.26 -11.57 6.79 99.48 0.68 -10.89 16 18 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 19 H -0.25 -11.17 6.36 99.48 0.63 -10.53 16 20 C 0.09 3.78 4.68 86.32 0.40 4.18 16 21 N -0.40 -11.51 11.28 -60.33 -0.68 -12.19 16 22 O 0.08 1.75 11.31 74.87 0.85 2.60 16 23 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 24 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 25 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.07 1.91 8.12 -2.39 -0.02 1.89 16 27 H 0.11 3.19 7.98 -2.39 -0.02 3.17 16 28 H 0.07 2.28 6.45 -2.39 -0.02 2.26 16 29 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.05 2.00 4.37 -2.39 -0.01 1.99 16 33 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 34 H 0.25 16.27 8.72 -92.71 -0.81 15.47 16 35 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 2.73 8.01 -2.39 -0.02 2.71 16 Total: -1.00 -72.14 290.09 0.23 -71.91 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: 0.93 Total: 5.19 kcal Atomic # 6 Polarization: -24.55 SS G_CDS: 4.79 Total: -19.76 kcal Atomic # 7 Polarization: -105.64 SS G_CDS: -8.08 Total: -113.71 kcal Atomic # 8 Polarization: 1.75 SS G_CDS: 0.85 Total: 2.60 kcal Atomic # 14 Polarization: 52.04 SS G_CDS: 1.74 Total: 53.78 kcal Total: -72.14 0.23 -71.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595612364.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.097 kcal (2) G-P(sol) polarization free energy of solvation -72.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds