Wall clock time and date at job start Mon Mar 30 2020 00:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46916 * 2 1 4 4 C 1.52996 * 109.46988 * 119.99559 * 2 1 3 5 5 C 1.53001 * 109.47180 * 65.00210 * 4 2 1 6 6 C 1.50702 * 109.47071 * 180.02562 * 5 4 2 7 7 C 1.35433 * 125.53335 * 275.29055 * 6 5 4 8 8 C 1.41024 * 108.18435 * 180.16501 * 7 6 5 9 9 N 1.33005 * 126.38098 * 179.82654 * 8 7 6 10 10 C 1.34074 * 119.99751 * 179.71526 * 9 8 7 11 11 O 1.22125 * 119.99752 * 0.02562 * 10 9 8 12 12 C 1.46207 * 119.99948 * 180.02562 * 10 9 8 13 13 H 1.08004 * 119.99553 * 0.02562 * 12 10 9 14 14 C 1.40125 * 120.00037 * 180.02562 * 12 10 9 15 15 N 1.30609 * 120.00092 * 0.02562 * 14 12 10 16 16 Si 1.86809 * 120.00133 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46717 * 59.99835 * 16 14 12 18 18 H 1.48497 * 109.46887 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46828 * 299.99836 * 16 14 12 20 20 N 1.37527 * 107.23158 * 359.57092 * 8 7 6 21 21 H 0.96995 * 126.34288 * 180.25881 * 20 8 7 22 22 N 1.36179 * 125.54105 * 94.97737 * 6 5 4 23 23 H 0.97000 * 125.82411 * 0.02562 * 22 6 5 24 24 H 1.08993 * 109.47778 * 300.00447 * 1 2 3 25 25 H 1.09005 * 109.47465 * 60.00626 * 1 2 3 26 26 H 1.09007 * 109.47124 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47692 * 239.99996 * 2 1 3 28 28 H 1.09001 * 109.46622 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46631 * 299.99434 * 3 2 1 30 30 H 1.08999 * 109.46943 * 59.99538 * 3 2 1 31 31 H 1.09001 * 109.47347 * 305.00534 * 4 2 1 32 32 H 1.09006 * 109.47553 * 185.00336 * 4 2 1 33 33 H 1.08995 * 109.47020 * 60.00242 * 5 4 2 34 34 H 1.08997 * 109.47364 * 300.00019 * 5 4 2 35 35 H 1.08000 * 125.90660 * 0.03133 * 7 6 5 36 36 H 0.97001 * 120.00376 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 1.6352 -2.1954 1.1881 6 6 2.1370 -2.9055 2.4189 7 6 3.3775 -3.4255 2.5769 8 6 3.4511 -4.0063 3.8599 9 7 4.5053 -4.6219 4.3879 10 6 4.4357 -5.1252 5.6286 11 8 3.4042 -5.0188 6.2737 12 6 5.5947 -5.8014 6.2093 13 1 6.5070 -5.8951 5.6388 14 6 5.5218 -6.3279 7.5058 15 7 4.4184 -6.2150 8.1954 16 14 7.0028 -7.1913 8.2480 17 1 8.1475 -6.2471 8.3079 18 1 6.6704 -7.6533 9.6196 19 1 7.3679 -8.3592 7.4066 20 7 2.2317 -3.8124 4.4655 21 1 1.9807 -4.0994 5.3574 22 7 1.4187 -3.1234 3.5552 23 1 0.5010 -2.8490 3.7082 24 1 -0.3634 0.5138 0.8898 25 1 -0.3634 0.5137 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6765 1.9564 0.8899 31 1 1.6052 -0.2616 2.1370 32 1 3.1263 -0.6442 1.2953 33 1 2.0699 -2.6549 0.3005 34 1 0.5489 -2.2724 1.1421 35 1 4.1721 -3.4016 1.8459 36 1 4.3680 -6.5791 9.0931 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597842695.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:00:51 Heat of formation + Delta-G solvation = 35.309040 kcal Electronic energy + Delta-G solvation = -17731.594107 eV Core-core repulsion = 14831.563390 eV Total energy + Delta-G solvation = -2900.030716 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.57454 -37.32720 -36.61171 -33.16811 -32.35403 -31.84894 -29.06160 -28.71997 -27.44509 -26.11502 -24.30375 -21.58435 -20.22634 -20.17556 -19.06992 -17.59201 -16.17231 -15.63354 -15.21538 -14.86678 -14.70908 -14.10740 -13.95775 -13.57162 -13.49857 -13.06687 -12.58612 -12.52135 -12.32194 -12.07707 -11.94594 -11.53483 -11.17458 -11.06511 -10.92412 -10.84537 -10.75125 -10.53879 -10.21737 -9.66966 -8.76369 -8.70543 -8.62722 -7.21300 -6.54367 -6.09758 -4.45190 1.97624 2.56164 3.21039 3.26455 3.31054 3.53457 4.21825 4.41336 4.59451 4.63891 4.78554 4.89274 4.90771 4.99651 5.24170 5.36579 5.42584 5.46067 5.56726 5.61328 5.76365 5.81258 5.95611 5.97082 6.06156 6.15085 6.18050 6.24730 6.57302 6.86855 7.44040 7.55080 7.73958 8.31679 8.56543 9.11996 9.19128 9.45201 10.68176 10.99753 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.058215 B = 0.003670 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.863920 B = 7627.565252 C = 7852.962405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.097 4.097 3 C -0.149 4.149 4 C -0.112 4.112 5 C -0.058 4.058 6 C 0.153 3.847 7 C -0.263 4.263 8 C 0.445 3.555 9 N -0.630 5.630 10 C 0.506 3.494 11 O -0.621 6.621 12 C -0.493 4.493 13 H 0.074 0.926 14 C 0.077 3.923 15 N -0.765 5.765 16 Si 0.910 3.090 17 H -0.267 1.267 18 H -0.282 1.282 19 H -0.267 1.267 20 N -0.508 5.508 21 H 0.450 0.550 22 N -0.511 5.511 23 H 0.429 0.571 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.155 0.845 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.043 12.271 -15.735 21.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.116 4.116 3 C -0.206 4.206 4 C -0.150 4.150 5 C -0.097 4.097 6 C 0.033 3.967 7 C -0.296 4.296 8 C 0.186 3.814 9 N -0.385 5.385 10 C 0.314 3.686 11 O -0.510 6.510 12 C -0.528 4.528 13 H 0.092 0.908 14 C -0.142 4.142 15 N -0.395 5.395 16 Si 0.735 3.265 17 H -0.191 1.191 18 H -0.207 1.207 19 H -0.191 1.191 20 N -0.257 5.257 21 H 0.309 0.691 22 N -0.229 5.229 23 H 0.273 0.727 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.172 0.828 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.055 12.004 -15.098 21.308 hybrid contribution -0.419 -0.433 1.370 1.496 sum -9.473 11.571 -13.728 20.300 Atomic orbital electron populations 1.21928 0.95453 1.01830 1.01676 1.21132 0.95721 0.96321 0.98390 1.21843 1.01255 0.95886 1.01608 1.21677 1.02217 0.93165 0.97931 1.20418 1.01326 0.94886 0.93083 1.20722 0.91981 0.96394 0.87563 1.20494 0.97588 1.13087 0.98386 1.20821 0.80366 0.88930 0.91260 1.70221 1.21875 1.26501 1.19884 1.18974 0.88434 0.79688 0.81528 1.90270 1.32789 1.62542 1.65382 1.20882 0.98908 1.34319 0.98703 0.90766 1.25908 0.96469 0.94908 0.96959 1.70010 1.25757 1.34378 1.09310 0.86393 0.82052 0.80137 0.77938 1.19139 1.20695 1.19136 1.47393 1.09071 1.54929 1.14311 0.69063 1.43873 1.12598 1.55861 1.10522 0.72731 0.92757 0.92866 0.92399 0.90861 0.92442 0.92833 0.92752 0.91743 0.90650 0.88617 0.90483 0.82769 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 8.95 37.16 0.33 -0.55 16 2 C -0.10 -0.62 2.92 -90.62 -0.26 -0.89 16 3 C -0.15 -0.96 9.19 37.16 0.34 -0.62 16 4 C -0.11 -0.88 4.66 -26.73 -0.12 -1.00 16 5 C -0.06 -0.48 5.50 -27.88 -0.15 -0.63 16 6 C 0.15 2.03 6.44 -81.66 -0.53 1.50 16 7 C -0.26 -4.62 10.73 -39.53 -0.42 -5.04 16 8 C 0.44 10.43 7.73 -155.20 -1.20 9.23 16 9 N -0.63 -17.91 10.53 -12.63 -0.13 -18.05 16 10 C 0.51 16.24 7.66 -13.37 -0.10 16.14 16 11 O -0.62 -20.49 12.40 4.80 0.06 -20.43 16 12 C -0.49 -15.64 9.63 -35.68 -0.34 -15.98 16 13 H 0.07 2.25 7.85 -52.48 -0.41 1.84 16 14 C 0.08 2.29 5.50 -17.36 -0.10 2.19 16 15 N -0.76 -23.85 11.82 55.55 0.66 -23.19 16 16 Si 0.91 21.49 29.56 -169.99 -5.02 16.46 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 N -0.51 -10.66 7.05 31.33 0.22 -10.44 16 21 H 0.45 10.50 6.35 -182.57 -1.16 9.34 16 22 N -0.51 -7.35 7.39 33.71 0.25 -7.11 16 23 H 0.43 4.42 8.96 -182.56 -1.64 2.78 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.31 6.56 -51.92 -0.34 -0.03 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.50 6.56 -51.93 -0.34 0.16 16 35 H 0.15 2.41 8.06 -52.49 -0.42 1.98 16 36 H 0.27 7.52 8.29 -40.82 -0.34 7.18 16 LS Contribution 304.90 15.07 4.59 4.59 Total: -1.00 -38.59 304.90 -9.19 -47.78 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -7.25 Total: 6.01 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -2.56 Total: 4.36 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: 0.99 Total: -58.78 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: 0.06 Total: -20.43 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -38.59 -9.19 -47.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597842695.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.092 kcal (2) G-P(sol) polarization free energy of solvation -38.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds