Wall clock time and date at job start Sun Mar 29 2020 22:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00178 * 2 1 4 4 H 1.48498 * 109.47109 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46845 * 300.00634 * 3 2 1 6 6 H 1.48498 * 109.46760 * 60.00480 * 3 2 1 7 7 C 1.37879 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00029 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99870 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.46895 * 180.02562 * 9 7 2 11 11 C 1.42904 * 113.99993 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46874 * 179.97438 * 11 10 9 13 13 N 1.46896 * 109.47163 * 65.00216 * 12 11 10 14 14 C 1.46960 * 110.99729 * 189.99541 * 13 12 11 15 15 C 1.53504 * 109.66162 * 164.43776 * 14 13 12 16 16 C 1.50915 * 107.86386 * 49.23560 * 15 14 13 17 17 N 1.33293 * 128.91820 * 163.97391 * 16 15 14 18 18 C 1.30845 * 109.09911 * 180.23290 * 17 16 15 19 19 N 1.35380 * 108.78586 * 359.97438 * 18 17 16 20 20 H 0.97001 * 126.49965 * 179.97438 * 19 18 17 21 21 C 1.35255 * 123.02440 * 344.15507 * 16 15 14 22 22 C 1.47247 * 111.01701 * 65.39666 * 13 12 11 23 23 H 0.97004 * 119.99932 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47041 * 60.00144 * 9 7 2 25 25 H 1.08992 * 109.47264 * 299.99805 * 9 7 2 26 26 H 1.09002 * 109.46657 * 60.00161 * 11 10 9 27 27 H 1.08995 * 109.47119 * 299.99871 * 11 10 9 28 28 H 1.08998 * 109.47170 * 304.99530 * 12 11 10 29 29 H 1.09001 * 109.46661 * 185.00520 * 12 11 10 30 30 H 1.09001 * 109.43452 * 44.37697 * 14 13 12 31 31 H 1.08998 * 109.40377 * 284.47871 * 14 13 12 32 32 H 1.09002 * 109.78613 * 289.64272 * 15 14 13 33 33 H 1.09007 * 109.77949 * 168.82368 * 15 14 13 34 34 H 1.07995 * 125.60433 * 179.97438 * 18 17 16 35 35 H 1.08999 * 109.50295 * 55.56639 * 22 13 12 36 36 H 1.08990 * 109.86481 * 294.97724 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.5649 -4.8754 0.0000 12 6 2.6479 -5.9562 -0.0006 13 7 3.4089 -5.8877 1.2540 14 6 4.6010 -6.7450 1.1943 15 6 5.5653 -6.3684 2.3278 16 6 4.7725 -6.3130 3.6107 17 7 5.2139 -6.3145 4.8685 18 6 4.1901 -6.2606 5.6815 19 7 3.0527 -6.2224 4.9483 20 1 2.1463 -6.1800 5.2913 21 6 3.4216 -6.2544 3.6406 22 6 2.5579 -6.2266 2.4069 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 0.9445 -4.9827 -0.8897 27 1 0.9451 -4.9822 0.8902 28 1 3.3208 -5.7957 -0.8430 29 1 2.1818 -6.9375 -0.0899 30 1 5.0985 -6.6080 0.2342 31 1 4.3030 -7.7878 1.3030 32 1 6.0091 -5.3934 2.1260 33 1 6.3492 -7.1213 2.4106 34 1 4.2437 -6.2487 6.7601 35 1 2.1078 -7.2070 2.2513 36 1 1.7756 -5.4766 2.5229 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599422387.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:57 Heat of formation + Delta-G solvation = -8.408403 kcal Electronic energy + Delta-G solvation = -18289.207449 eV Core-core repulsion = 15387.281002 eV Total energy + Delta-G solvation = -2901.926447 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.17227 -39.42458 -37.95613 -34.97565 -34.33246 -32.86682 -30.75141 -30.03373 -28.51689 -25.70208 -24.48583 -23.86245 -22.52033 -22.31494 -19.89678 -18.94376 -18.61376 -17.43793 -16.86382 -16.72428 -16.47227 -16.00750 -15.56639 -15.43822 -14.99050 -14.67758 -14.27529 -14.07273 -13.69577 -13.57450 -13.07130 -12.95746 -12.83429 -12.73974 -12.41067 -12.20854 -12.09104 -11.68055 -11.22590 -10.93464 -10.86081 -10.82061 -10.15178 -9.26355 -9.02325 -8.32098 -6.43182 1.06387 1.39028 1.40068 1.55294 2.14077 2.15690 2.35167 2.91643 3.01702 3.27363 3.57783 3.83319 4.06263 4.17714 4.24948 4.33642 4.34661 4.47090 4.47654 4.56760 4.68295 4.73630 4.83682 4.88781 4.96114 5.04988 5.14231 5.20772 5.23917 5.56580 5.75317 5.98768 6.10240 6.15933 6.57525 6.58798 6.89179 7.13148 7.29374 8.80414 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.022715 B = 0.005032 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.371726 B = 5562.661586 C = 6028.637992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.979 3.021 4 H -0.267 1.267 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.544 4.544 8 H 0.057 0.943 9 C 0.210 3.790 10 O -0.396 6.396 11 C 0.054 3.946 12 C 0.074 3.926 13 N -0.552 5.552 14 C 0.065 3.935 15 C -0.029 4.029 16 C -0.015 4.015 17 N -0.529 5.529 18 C 0.183 3.817 19 N -0.548 5.548 20 H 0.435 0.565 21 C -0.041 4.041 22 C 0.140 3.860 23 H 0.270 0.730 24 H -0.014 1.014 25 H -0.019 1.019 26 H 0.051 0.949 27 H 0.038 0.962 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.250 0.750 35 H 0.068 0.932 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.378 -16.676 7.152 18.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.191 4.191 3 Si 0.802 3.198 4 H -0.191 1.191 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.075 0.925 9 C 0.135 3.865 10 O -0.315 6.315 11 C -0.024 4.024 12 C -0.054 4.054 13 N -0.278 5.278 14 C -0.063 4.063 15 C -0.068 4.068 16 C -0.145 4.145 17 N -0.249 5.249 18 C -0.099 4.099 19 N -0.152 5.152 20 H 0.276 0.724 21 C -0.158 4.158 22 C 0.011 3.989 23 H 0.079 0.921 24 H 0.004 0.996 25 H -0.002 1.002 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.110 0.890 34 H 0.265 0.735 35 H 0.086 0.914 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.436 -16.104 7.425 18.548 hybrid contribution -1.818 0.283 0.033 1.840 sum 3.618 -15.821 7.459 17.862 Atomic orbital electron populations 1.70066 1.07639 1.28476 1.50865 1.25907 0.95937 1.03211 0.94020 0.85193 0.78648 0.77585 0.78347 1.19117 1.19376 1.19716 1.21416 0.93955 0.91070 1.51732 0.92456 1.19757 0.88613 0.84995 0.93109 1.87920 1.34635 1.13919 1.95044 1.22658 0.95625 0.84602 0.99476 1.22107 0.95451 0.96206 0.91591 1.61578 1.08144 1.55688 1.02362 1.22159 0.90410 0.94295 0.99393 1.20049 0.96521 1.02175 0.88037 1.20826 0.91686 1.08166 0.93827 1.69844 1.32256 1.21352 1.01400 1.25867 0.79322 1.04481 1.00260 1.42772 1.11454 1.55653 1.05281 0.72401 1.20989 0.96406 1.11934 0.86513 1.20345 0.93097 1.00006 0.85455 0.92092 0.99646 1.00171 0.93114 0.94413 0.89311 0.90319 0.88581 0.93120 0.91690 0.88996 0.73465 0.91407 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.56 13.29 21.45 0.28 -56.27 16 2 C 0.01 0.44 5.46 84.66 0.46 0.90 16 3 Si 0.98 45.46 29.54 68.60 2.03 47.48 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 5 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.54 -33.31 9.43 25.60 0.24 -33.07 16 8 H 0.06 3.54 7.81 -2.91 -0.02 3.51 16 9 C 0.21 12.04 5.69 71.24 0.41 12.44 16 10 O -0.40 -19.63 10.27 -148.98 -1.53 -21.16 16 11 C 0.05 1.93 5.98 71.98 0.43 2.36 16 12 C 0.07 2.00 5.35 86.30 0.46 2.46 16 13 N -0.55 -16.15 4.57 -898.83 -4.11 -20.26 16 14 C 0.07 1.54 5.52 86.46 0.48 2.02 16 15 C -0.03 -0.79 6.52 30.09 0.20 -0.59 16 16 C -0.02 -0.46 7.07 41.72 0.30 -0.17 16 17 N -0.53 -15.87 11.24 -187.76 -2.11 -17.98 16 18 C 0.18 3.96 13.05 180.05 2.35 6.31 16 19 N -0.55 -11.48 6.14 -186.35 -1.14 -12.62 16 20 H 0.44 5.91 8.96 -92.71 -0.83 5.08 16 21 C -0.04 -1.12 7.18 41.21 0.30 -0.83 16 22 C 0.14 3.70 5.44 85.47 0.46 4.17 16 23 H 0.27 15.15 8.31 -92.71 -0.77 14.37 16 24 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 25 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 26 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.04 1.32 6.43 -2.39 -0.02 1.30 16 28 H 0.09 2.38 7.86 -2.39 -0.02 2.36 16 29 H 0.08 1.56 8.10 -2.39 -0.02 1.55 16 30 H 0.10 2.00 7.81 -2.39 -0.02 1.99 16 31 H 0.05 1.02 8.07 -2.39 -0.02 1.00 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 34 H 0.25 2.77 8.06 -2.91 -0.02 2.74 16 35 H 0.07 1.44 8.10 -2.39 -0.02 1.42 16 36 H 0.07 2.18 6.62 -2.39 -0.02 2.16 16 Total: -1.00 -77.34 299.92 -0.25 -77.60 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: 0.25 Total: 7.21 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 6.08 Total: -4.00 kcal Atomic # 7 Polarization: -100.05 SS G_CDS: -7.08 Total: -107.13 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -1.53 Total: -21.16 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -77.34 -0.25 -77.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599422387.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.189 kcal (2) G-P(sol) polarization free energy of solvation -77.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds