Wall clock time and date at job start Sun Mar 29 2020 23:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.47399 * 2 1 4 4 C 1.38228 * 120.40906 * 125.02203 * 3 2 1 5 5 C 1.39382 * 118.35094 * 179.97438 * 4 3 2 6 6 O 1.35516 * 120.50941 * 180.02562 * 5 4 3 7 7 N 1.32822 * 118.97382 * 359.73411 * 5 4 3 8 8 C 1.31763 * 120.72002 * 0.54531 * 7 5 4 9 9 C 1.50693 * 119.09581 * 179.71798 * 8 7 5 10 10 N 1.46902 * 109.47347 * 269.73133 * 9 8 7 11 11 C 1.46895 * 111.00037 * 179.97438 * 10 9 8 12 12 H 1.08998 * 109.47678 * 324.99963 * 11 10 9 13 13 C 1.52998 * 109.47264 * 85.00105 * 11 10 9 14 14 C 1.50706 * 109.47182 * 204.99721 * 11 10 9 15 15 H 1.08000 * 119.99302 * 0.02562 * 14 11 10 16 16 C 1.37871 * 120.00436 * 179.72677 * 14 11 10 17 17 N 1.31515 * 119.99684 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 120.00405 * 180.02562 * 16 14 11 19 19 H 1.48496 * 109.46683 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47426 * 119.99743 * 18 16 14 21 21 H 1.48501 * 109.46833 * 239.99986 * 18 16 14 22 22 N 1.31790 * 121.81035 * 359.43729 * 8 7 5 23 23 H 1.08997 * 109.46979 * 59.98982 * 1 2 3 24 24 H 1.08999 * 109.47502 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.46848 * 299.99555 * 1 2 3 26 26 H 1.09008 * 109.46848 * 240.00445 * 2 1 3 27 27 H 1.08997 * 109.46979 * 120.01018 * 2 1 3 28 28 H 1.08004 * 120.82776 * 359.96233 * 4 3 2 29 29 H 0.96706 * 113.99942 * 90.00207 * 6 5 4 30 30 H 1.09002 * 109.47701 * 149.72657 * 9 8 7 31 31 H 1.09008 * 109.47192 * 29.73001 * 9 8 7 32 32 H 1.00905 * 110.99700 * 303.95172 * 10 9 8 33 33 H 1.09005 * 109.47120 * 180.02562 * 13 11 10 34 34 H 1.09002 * 109.46792 * 299.99783 * 13 11 10 35 35 H 1.09002 * 109.47539 * 59.99708 * 13 11 10 36 36 H 0.97004 * 120.00247 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9107 1.8523 0.9763 5 6 3.3484 3.1750 0.9350 6 8 4.2100 3.6441 1.8699 7 7 2.9126 3.9668 -0.0383 8 6 2.0710 3.5163 -0.9466 9 6 1.5952 4.4483 -2.0310 10 7 0.3713 5.1299 -1.5887 11 6 -0.1222 6.0492 -2.6227 12 1 0.7235 6.4946 -3.1467 13 6 -0.9903 5.2777 -3.6188 14 6 -0.9429 7.1364 -1.9781 15 1 -1.0833 7.1438 -0.9072 16 6 -1.5092 8.1250 -2.7545 17 7 -1.3329 8.1194 -4.0578 18 14 -2.5259 9.4730 -1.9553 19 1 -2.5716 9.2540 -0.4873 20 1 -1.9089 10.7932 -2.2403 21 1 -3.9059 9.4428 -2.5031 22 7 1.6382 2.2716 -0.9359 23 1 -0.3633 0.5140 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5140 0.8899 28 1 3.2492 1.1814 1.7520 29 1 5.1419 3.5388 1.6341 30 1 1.3863 3.8769 -2.9354 31 1 2.3682 5.1882 -2.2392 32 1 -0.3397 4.4631 -1.3279 33 1 -1.3561 5.9598 -4.3863 34 1 -0.3967 4.4914 -4.0851 35 1 -1.8360 4.8323 -3.0950 36 1 -1.7310 8.8151 -4.6041 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602871157.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:41:59 Heat of formation + Delta-G solvation = -25.249523 kcal Electronic energy + Delta-G solvation = -18029.910676 eV Core-core repulsion = 15127.253944 eV Total energy + Delta-G solvation = -2902.656733 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.27817 -38.83860 -37.89824 -36.02503 -34.55300 -33.05289 -32.02576 -30.38429 -27.31654 -26.88820 -25.91026 -23.67142 -22.47263 -22.19017 -19.79154 -18.77588 -18.42136 -17.06732 -16.87197 -16.49256 -16.07143 -16.00559 -15.33371 -15.10366 -14.83860 -14.49302 -14.17401 -13.60960 -13.50192 -13.15617 -13.06144 -12.87166 -12.72883 -12.49110 -12.37831 -12.17610 -12.08618 -11.98349 -11.55685 -11.31917 -11.06891 -10.49134 -10.44453 -10.28801 -9.08142 -8.10394 -6.21167 -0.24009 -0.00885 1.42000 1.43479 1.56292 2.33036 2.41674 2.53750 2.85570 3.18095 3.25780 3.75584 3.93807 3.99163 4.12508 4.33275 4.37404 4.41850 4.56497 4.64763 4.76639 4.81136 4.90785 5.03022 5.06529 5.14055 5.27896 5.37054 5.44134 5.68365 5.77950 5.99296 6.23167 6.53021 6.56181 6.67157 6.90350 7.08499 7.48018 8.95678 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.025401 B = 0.004876 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.058634 B = 5741.340304 C = 6261.066592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.068 4.068 3 C 0.179 3.821 4 C -0.234 4.234 5 C 0.348 3.652 6 O -0.482 6.482 7 N -0.560 5.560 8 C 0.350 3.650 9 C 0.131 3.869 10 N -0.679 5.679 11 C 0.218 3.782 12 H 0.009 0.991 13 C -0.154 4.154 14 C -0.516 4.516 15 H 0.049 0.951 16 C 0.012 3.988 17 N -0.920 5.920 18 Si 0.962 3.038 19 H -0.273 1.273 20 H -0.280 1.280 21 H -0.277 1.277 22 N -0.533 5.533 23 H 0.044 0.956 24 H 0.086 0.914 25 H 0.045 0.955 26 H 0.100 0.900 27 H 0.118 0.882 28 H 0.190 0.810 29 H 0.427 0.573 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.331 0.669 33 H 0.065 0.935 34 H 0.029 0.971 35 H 0.031 0.969 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.258 -18.167 8.667 22.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 C 0.034 3.966 4 C -0.257 4.257 5 C 0.161 3.839 6 O -0.292 6.292 7 N -0.286 5.286 8 C 0.081 3.919 9 C 0.000 4.000 10 N -0.310 5.310 11 C 0.110 3.890 12 H 0.027 0.973 13 C -0.213 4.213 14 C -0.555 4.555 15 H 0.067 0.933 16 C -0.187 4.187 17 N -0.560 5.560 18 Si 0.787 3.213 19 H -0.198 1.198 20 H -0.206 1.206 21 H -0.203 1.203 22 N -0.251 5.251 23 H 0.063 0.937 24 H 0.104 0.896 25 H 0.064 0.936 26 H 0.118 0.882 27 H 0.136 0.864 28 H 0.207 0.793 29 H 0.290 0.710 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.147 0.853 33 H 0.084 0.916 34 H 0.048 0.952 35 H 0.050 0.950 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.842 -16.824 8.523 20.830 hybrid contribution -0.080 0.045 -0.086 0.126 sum 8.762 -16.779 8.437 20.724 Atomic orbital electron populations 1.21674 0.94044 1.03029 1.01540 1.20711 0.96878 0.87163 1.05766 1.22368 0.89111 0.97550 0.87550 1.23089 1.03195 0.96081 1.03287 1.19796 0.90683 0.87821 0.85605 1.84702 1.21377 1.84506 1.38647 1.67735 1.15645 1.40478 1.04748 1.22734 0.87916 0.89079 0.92144 1.20541 0.94296 0.93630 0.91539 1.60677 1.06230 1.21017 1.43034 1.18985 0.92849 0.89700 0.87451 0.97260 1.22217 0.99277 0.98551 1.01303 1.21402 1.31038 1.09444 0.93579 0.93261 1.25677 0.97633 0.99985 0.95388 1.70005 1.46099 1.34834 1.05066 0.85452 0.78399 0.78871 0.78534 1.19790 1.20551 1.20252 1.68090 1.25518 1.03887 1.27566 0.93693 0.89560 0.93603 0.88176 0.86420 0.79294 0.71007 0.92619 0.90110 0.85267 0.91638 0.95242 0.94990 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.78 71.98 0.70 -1.77 16 2 C -0.07 -0.99 6.36 29.85 0.19 -0.80 16 3 C 0.18 4.17 6.20 42.46 0.26 4.44 16 4 C -0.23 -4.84 9.75 22.54 0.22 -4.62 16 5 C 0.35 9.44 7.83 84.82 0.66 10.11 16 6 O -0.48 -10.47 13.58 -88.19 -1.20 -11.66 16 7 N -0.56 -19.89 10.36 -300.70 -3.12 -23.01 16 8 C 0.35 12.60 7.16 138.76 0.99 13.60 16 9 C 0.13 5.23 5.92 85.55 0.51 5.73 16 10 N -0.68 -31.45 6.22 -499.46 -3.11 -34.56 16 11 C 0.22 11.52 2.57 44.17 0.11 11.64 16 12 H 0.01 0.55 7.80 -2.39 -0.02 0.53 16 13 C -0.15 -7.60 8.94 71.98 0.64 -6.95 16 14 C -0.52 -29.90 8.84 25.60 0.23 -29.68 16 15 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 16 C 0.01 0.66 5.30 84.65 0.45 1.10 16 17 N -0.92 -53.76 11.34 21.45 0.24 -53.52 16 18 Si 0.96 45.28 29.54 68.60 2.03 47.31 16 19 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 22 N -0.53 -16.73 9.93 -176.24 -1.75 -18.48 16 23 H 0.04 1.00 7.98 -2.39 -0.02 0.98 16 24 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 26 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 27 H 0.12 0.91 7.93 -2.39 -0.02 0.89 16 28 H 0.19 2.22 8.01 -2.91 -0.02 2.19 16 29 H 0.43 4.26 9.06 -74.05 -0.67 3.58 16 30 H 0.06 2.13 7.44 -2.39 -0.02 2.11 16 31 H 0.08 3.34 8.06 -2.38 -0.02 3.32 16 32 H 0.33 14.87 8.47 -89.69 -0.76 14.11 16 33 H 0.06 3.56 6.09 -2.38 -0.01 3.55 16 34 H 0.03 1.27 7.45 -2.39 -0.02 1.26 16 35 H 0.03 1.51 8.13 -2.39 -0.02 1.49 16 36 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -71.24 307.90 -2.26 -73.50 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -0.33 Total: 17.63 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 4.97 Total: 2.80 kcal Atomic # 7 Polarization: -121.84 SS G_CDS: -7.73 Total: -129.57 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: -1.20 Total: -11.66 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -71.24 -2.26 -73.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602871157.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.246 kcal (2) G-P(sol) polarization free energy of solvation -71.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds