Wall clock time and date at job start Sun Mar 29 2020 23:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29951 * 126.28489 * 2 1 4 4 O 1.21300 * 110.24956 * 179.97438 * 3 2 1 5 5 C 1.33645 * 109.80991 * 359.97438 * 4 3 2 6 6 C 1.50702 * 126.54619 * 180.02562 * 5 4 3 7 7 N 1.46905 * 109.46924 * 269.97238 * 6 5 4 8 8 C 1.46895 * 111.00262 * 293.95599 * 7 6 5 9 9 C 1.46905 * 110.99708 * 169.99984 * 7 6 5 10 10 C 1.53001 * 109.47019 * 196.02431 * 9 7 6 11 11 C 1.50703 * 115.54522 * 55.33430 * 10 9 7 12 12 H 1.07996 * 120.00341 * 265.09867 * 11 10 9 13 13 C 1.37886 * 119.99740 * 85.10652 * 11 10 9 14 14 N 1.31505 * 120.00086 * 4.18142 * 13 11 10 15 15 Si 1.86802 * 119.99395 * 184.17990 * 13 11 10 16 16 H 1.48495 * 109.47022 * 60.00207 * 15 13 11 17 17 H 1.48504 * 109.46570 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47076 * 299.99522 * 15 13 11 19 19 C 1.52991 * 117.50255 * 269.66363 * 10 9 7 20 20 C 1.52998 * 117.49739 * 200.99919 * 10 9 7 21 21 N 1.31128 * 106.89735 * 359.77364 * 5 4 3 22 22 H 1.09001 * 109.46971 * 90.02701 * 1 2 3 23 23 H 1.09001 * 109.47130 * 210.02312 * 1 2 3 24 24 H 1.09000 * 109.47041 * 330.02179 * 1 2 3 25 25 H 1.08996 * 109.47214 * 29.97658 * 6 5 4 26 26 H 1.09001 * 109.46686 * 149.98179 * 6 5 4 27 27 H 1.09000 * 109.46856 * 58.21939 * 8 7 6 28 28 H 1.09005 * 109.46843 * 178.21797 * 8 7 6 29 29 H 1.08996 * 109.47440 * 298.21861 * 8 7 6 30 30 H 1.09001 * 109.47265 * 316.03018 * 9 7 6 31 31 H 1.09004 * 109.46920 * 76.02729 * 9 7 6 32 32 H 0.97003 * 120.00009 * 185.01102 * 14 13 11 33 33 H 1.09012 * 117.49814 * 0.02562 * 19 10 9 34 34 H 1.08997 * 117.50305 * 145.02038 * 19 10 9 35 35 H 1.08997 * 117.50049 * 214.98098 * 20 10 9 36 36 H 1.08999 * 117.50195 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4419 0.7124 0.0005 5 6 3.5298 -0.6211 0.0015 6 6 4.7970 -1.4368 0.0029 7 7 5.2093 -1.7034 -1.3817 8 6 4.2373 -2.5687 -2.0632 9 6 6.5565 -2.2874 -1.4266 10 6 7.1104 -2.1830 -2.8490 11 6 7.1333 -0.7958 -3.4374 12 1 6.3167 -0.4591 -4.0587 13 6 8.1971 0.0437 -3.1824 14 7 9.2294 -0.3933 -2.4948 15 14 8.1717 1.8015 -3.8138 16 1 7.0042 2.5171 -3.2392 17 1 9.4234 2.4907 -3.4095 18 1 8.0677 1.7939 -5.2952 19 6 6.8379 -3.3495 -3.8007 20 6 8.2447 -3.1338 -3.2370 21 7 2.3030 -1.0840 0.0064 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3633 -0.8898 0.5142 24 1 -0.3633 0.8902 0.5135 25 1 5.5840 -0.8847 0.5165 26 1 4.6204 -2.3813 0.5175 27 1 3.2560 -2.0945 -2.0487 28 1 4.5506 -2.7242 -3.0956 29 1 4.1843 -3.5293 -1.5510 30 1 7.2098 -1.7470 -0.7416 31 1 6.5080 -3.3357 -1.1316 32 1 9.9441 0.2163 -2.2529 33 1 6.2636 -4.1913 -3.4136 34 1 6.6756 -3.1138 -4.8524 35 1 9.0072 -2.7561 -3.9181 36 1 8.5966 -3.8333 -2.4787 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602873110.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:36:35 Heat of formation + Delta-G solvation = 103.752412 kcal Electronic energy + Delta-G solvation = -18703.948222 eV Core-core repulsion = 15806.885433 eV Total energy + Delta-G solvation = -2897.062789 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -45.33992 -37.86786 -35.96082 -35.34080 -32.64924 -31.78754 -29.24101 -27.70202 -27.04363 -25.25734 -23.47552 -22.44137 -21.05282 -20.71033 -19.01764 -17.89931 -17.12874 -16.02803 -15.12793 -14.90233 -14.66431 -14.42053 -13.94189 -13.60872 -13.54713 -13.14203 -12.74257 -12.49008 -12.19172 -11.72112 -11.47073 -11.34144 -11.24094 -11.05193 -10.85812 -10.81141 -10.66265 -10.40467 -10.10789 -9.76980 -9.40868 -8.89814 -8.29667 -8.03509 -7.70722 -5.92413 -3.94499 1.34743 2.35969 3.05721 3.40082 3.43955 3.49655 3.77331 4.18245 4.48822 4.56027 5.05211 5.27708 5.29862 5.36316 5.39735 5.46098 5.51226 5.72472 5.86018 5.92249 5.98999 6.13625 6.18453 6.22695 6.43025 6.49953 6.53743 6.74109 6.86691 7.14118 7.40846 7.51368 7.57947 7.81991 8.00196 8.37242 8.55644 9.04008 9.69036 11.16728 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.021853 B = 0.006816 C = 0.005705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.956437 B = 4107.230275 C = 4906.667231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.159 3.841 3 N -0.392 5.392 4 O 0.086 5.914 5 C 0.214 3.786 6 C 0.139 3.861 7 N -0.511 5.511 8 C 0.027 3.973 9 C 0.106 3.894 10 C 0.051 3.949 11 C -0.464 4.464 12 H 0.056 0.944 13 C 0.070 3.930 14 N -0.888 5.888 15 Si 0.884 3.116 16 H -0.276 1.276 17 H -0.290 1.290 18 H -0.280 1.280 19 C -0.218 4.218 20 C -0.150 4.150 21 N -0.490 5.490 22 H 0.086 0.914 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.111 0.889 26 H 0.074 0.926 27 H 0.055 0.945 28 H 0.082 0.918 29 H 0.018 0.982 30 H 0.079 0.921 31 H 0.010 0.990 32 H 0.258 0.742 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.053 -3.020 6.018 12.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.113 4.113 3 N -0.101 5.101 4 O 0.029 5.971 5 C -0.007 4.007 6 C 0.009 3.991 7 N -0.236 5.236 8 C -0.121 4.121 9 C -0.021 4.021 10 C 0.050 3.950 11 C -0.501 4.501 12 H 0.075 0.925 13 C -0.132 4.132 14 N -0.526 5.526 15 Si 0.712 3.288 16 H -0.201 1.201 17 H -0.215 1.215 18 H -0.206 1.206 19 C -0.255 4.255 20 C -0.188 4.188 21 N -0.226 5.226 22 H 0.104 0.896 23 H 0.107 0.893 24 H 0.102 0.898 25 H 0.129 0.871 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.036 0.964 30 H 0.097 0.903 31 H 0.028 0.972 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.453 -2.009 5.802 12.996 hybrid contribution 0.167 0.213 0.085 0.284 sum -11.286 -1.795 5.887 12.856 Atomic orbital electron populations 1.20067 0.83352 1.04195 1.04065 1.25824 1.00386 0.83941 1.01193 1.74621 0.89654 1.24192 1.21631 1.85321 1.21844 1.24962 1.64953 1.28807 0.96590 0.81946 0.93327 1.20616 0.88255 0.96213 0.94026 1.61770 1.03446 1.48175 1.10229 1.22460 0.95439 0.93701 1.00530 1.21760 0.86234 0.93877 1.00199 1.18765 0.96355 0.90622 0.89282 1.20206 1.03825 0.96164 1.29955 0.92539 1.24881 0.94864 0.97911 0.95509 1.69983 1.08735 1.34317 1.39587 0.86792 0.77189 0.85631 0.79182 1.20116 1.21545 1.20564 1.23074 1.00843 1.01889 0.99687 1.22510 0.91128 1.02633 1.02501 1.71895 0.99815 1.29385 1.21488 0.89560 0.89332 0.89833 0.87090 0.90831 0.92579 0.89980 0.96363 0.90302 0.97157 0.93248 0.92081 0.90613 0.89652 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.58 10.51 36.01 0.38 -0.21 16 2 C 0.16 2.40 8.22 -156.37 -1.28 1.11 16 3 N -0.39 -6.69 12.16 30.90 0.38 -6.31 16 4 O 0.09 1.54 11.31 18.10 0.20 1.74 16 5 C 0.21 3.52 7.12 -13.06 -0.09 3.43 16 6 C 0.14 2.15 5.58 -4.97 -0.03 2.12 16 7 N -0.51 -9.62 4.41 -244.36 -1.08 -10.70 16 8 C 0.03 0.47 9.11 60.06 0.55 1.01 16 9 C 0.11 2.16 4.88 -3.82 -0.02 2.14 16 10 C 0.05 1.18 1.24 -155.66 -0.19 0.98 16 11 C -0.46 -12.28 8.54 -34.44 -0.29 -12.57 16 12 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 13 C 0.07 1.88 5.43 -17.82 -0.10 1.78 16 14 N -0.89 -24.47 12.65 55.43 0.70 -23.77 16 15 Si 0.88 21.39 29.54 -169.99 -5.02 16.37 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 C -0.22 -4.56 8.36 -26.70 -0.22 -4.78 16 20 C -0.15 -3.39 9.18 -26.69 -0.25 -3.64 16 21 N -0.49 -7.85 10.82 -9.87 -0.11 -7.96 16 22 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.11 1.59 7.86 -51.93 -0.41 1.18 16 26 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 27 H 0.06 0.97 6.67 -51.93 -0.35 0.62 16 28 H 0.08 1.52 6.12 -51.93 -0.32 1.20 16 29 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 1.71 7.81 -51.93 -0.41 1.30 16 31 H 0.01 0.19 8.00 -51.93 -0.42 -0.22 16 32 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 33 H 0.06 1.15 8.05 -51.92 -0.42 0.73 16 34 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.08 2.11 8.14 -51.93 -0.42 1.69 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 306.11 15.07 4.61 4.61 Total: -1.00 -29.20 306.11 -7.10 -36.30 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -5.24 Total: -1.65 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -1.55 Total: -8.62 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: -0.11 Total: -48.74 kcal Atomic # 8 Polarization: 1.54 SS G_CDS: 0.20 Total: 1.74 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.20 -7.10 -36.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602873110.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.051 kcal (2) G-P(sol) polarization free energy of solvation -29.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds