Wall clock time and date at job start Sun Mar 29 2020 23:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29951 * 126.28489 * 2 1 4 4 O 1.21300 * 110.24956 * 179.97438 * 3 2 1 5 5 C 1.33645 * 109.80991 * 359.97438 * 4 3 2 6 6 C 1.50702 * 126.54619 * 180.02562 * 5 4 3 7 7 N 1.46905 * 109.46924 * 269.97238 * 6 5 4 8 8 C 1.46895 * 111.00262 * 293.95599 * 7 6 5 9 9 C 1.46905 * 110.99708 * 169.99984 * 7 6 5 10 10 C 1.53001 * 109.47019 * 196.02431 * 9 7 6 11 11 C 1.50703 * 115.54522 * 55.33430 * 10 9 7 12 12 H 1.07996 * 120.00341 * 265.09867 * 11 10 9 13 13 C 1.37886 * 119.99740 * 85.10652 * 11 10 9 14 14 N 1.31505 * 120.00086 * 4.18142 * 13 11 10 15 15 Si 1.86802 * 119.99395 * 184.17990 * 13 11 10 16 16 H 1.48495 * 109.47022 * 60.00207 * 15 13 11 17 17 H 1.48504 * 109.46570 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47076 * 299.99522 * 15 13 11 19 19 C 1.52991 * 117.50255 * 269.66363 * 10 9 7 20 20 C 1.52998 * 117.49739 * 200.99919 * 10 9 7 21 21 N 1.31128 * 106.89735 * 359.77364 * 5 4 3 22 22 H 1.09001 * 109.46971 * 90.02701 * 1 2 3 23 23 H 1.09001 * 109.47130 * 210.02312 * 1 2 3 24 24 H 1.09000 * 109.47041 * 330.02179 * 1 2 3 25 25 H 1.08996 * 109.47214 * 29.97658 * 6 5 4 26 26 H 1.09001 * 109.46686 * 149.98179 * 6 5 4 27 27 H 1.09000 * 109.46856 * 58.21939 * 8 7 6 28 28 H 1.09005 * 109.46843 * 178.21797 * 8 7 6 29 29 H 1.08996 * 109.47440 * 298.21861 * 8 7 6 30 30 H 1.09001 * 109.47265 * 316.03018 * 9 7 6 31 31 H 1.09004 * 109.46920 * 76.02729 * 9 7 6 32 32 H 0.97003 * 120.00009 * 185.01102 * 14 13 11 33 33 H 1.09012 * 117.49814 * 0.02562 * 19 10 9 34 34 H 1.08997 * 117.50305 * 145.02038 * 19 10 9 35 35 H 1.08997 * 117.50049 * 214.98098 * 20 10 9 36 36 H 1.08999 * 117.50195 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4419 0.7124 0.0005 5 6 3.5298 -0.6211 0.0015 6 6 4.7970 -1.4368 0.0029 7 7 5.2093 -1.7034 -1.3817 8 6 4.2373 -2.5687 -2.0632 9 6 6.5565 -2.2874 -1.4266 10 6 7.1104 -2.1830 -2.8490 11 6 7.1333 -0.7958 -3.4374 12 1 6.3167 -0.4591 -4.0587 13 6 8.1971 0.0437 -3.1824 14 7 9.2294 -0.3933 -2.4948 15 14 8.1717 1.8015 -3.8138 16 1 7.0042 2.5171 -3.2392 17 1 9.4234 2.4907 -3.4095 18 1 8.0677 1.7939 -5.2952 19 6 6.8379 -3.3495 -3.8007 20 6 8.2447 -3.1338 -3.2370 21 7 2.3030 -1.0840 0.0064 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3633 -0.8898 0.5142 24 1 -0.3633 0.8902 0.5135 25 1 5.5840 -0.8847 0.5165 26 1 4.6204 -2.3813 0.5175 27 1 3.2560 -2.0945 -2.0487 28 1 4.5506 -2.7242 -3.0956 29 1 4.1843 -3.5293 -1.5510 30 1 7.2098 -1.7470 -0.7416 31 1 6.5080 -3.3357 -1.1316 32 1 9.9441 0.2163 -2.2529 33 1 6.2636 -4.1913 -3.4136 34 1 6.6756 -3.1138 -4.8524 35 1 9.0072 -2.7561 -3.9181 36 1 8.5966 -3.8333 -2.4787 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602873110.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:36:34 Heat of formation + Delta-G solvation = 84.564815 kcal Electronic energy + Delta-G solvation = -18704.780258 eV Core-core repulsion = 15806.885433 eV Total energy + Delta-G solvation = -2897.894826 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -46.56426 -39.42332 -37.32014 -36.75844 -33.98071 -33.72655 -30.20438 -28.99878 -28.57755 -27.23685 -24.73979 -23.79361 -22.79682 -21.94415 -20.84400 -19.16016 -18.38880 -17.86113 -16.63921 -16.40257 -16.19228 -16.07319 -15.37607 -14.86486 -14.65890 -14.45563 -14.12260 -13.57692 -13.53351 -13.26969 -13.12814 -12.80290 -12.77021 -12.62884 -12.55169 -12.33732 -12.21018 -12.05450 -11.89962 -11.25017 -10.97713 -10.80841 -10.23971 -9.84014 -9.10692 -7.98482 -6.03331 0.09104 1.18347 1.44081 1.46550 1.52895 1.83187 2.51370 2.66163 3.08159 3.17185 3.31556 3.66343 3.93704 4.17392 4.33854 4.42343 4.49920 4.55991 4.58709 4.60036 4.67696 4.74491 4.78979 4.85114 4.91388 5.03657 5.07568 5.12098 5.22361 5.37694 5.72162 5.74782 5.91302 6.18446 6.25815 6.60002 6.98032 7.13847 7.61206 9.09490 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.021853 B = 0.006816 C = 0.005705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.956437 B = 4107.230275 C = 4906.667231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.164 3.836 3 N -0.416 5.416 4 O 0.059 5.941 5 C 0.211 3.789 6 C 0.142 3.858 7 N -0.537 5.537 8 C 0.036 3.964 9 C 0.120 3.880 10 C 0.026 3.974 11 C -0.470 4.470 12 H 0.038 0.962 13 C 0.031 3.969 14 N -0.908 5.908 15 Si 0.930 3.070 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.279 1.279 19 C -0.192 4.192 20 C -0.156 4.156 21 N -0.495 5.495 22 H 0.100 0.900 23 H 0.107 0.893 24 H 0.099 0.901 25 H 0.117 0.883 26 H 0.102 0.898 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.039 0.961 30 H 0.060 0.940 31 H 0.033 0.967 32 H 0.256 0.744 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.580 -3.972 6.627 14.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.109 4.109 3 N -0.130 5.130 4 O 0.007 5.993 5 C -0.009 4.009 6 C 0.013 3.987 7 N -0.262 5.262 8 C -0.112 4.112 9 C -0.007 4.007 10 C 0.025 3.975 11 C -0.508 4.508 12 H 0.057 0.943 13 C -0.168 4.168 14 N -0.547 5.547 15 Si 0.758 3.242 16 H -0.207 1.207 17 H -0.211 1.211 18 H -0.205 1.205 19 C -0.229 4.229 20 C -0.194 4.194 21 N -0.231 5.231 22 H 0.118 0.882 23 H 0.125 0.875 24 H 0.117 0.883 25 H 0.135 0.865 26 H 0.119 0.881 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.961 -2.963 6.405 14.758 hybrid contribution 0.559 0.489 -0.135 0.755 sum -12.402 -2.474 6.270 14.115 Atomic orbital electron populations 1.20348 0.79973 1.05914 1.05448 1.26730 1.02218 0.83103 0.98867 1.74627 0.89655 1.25242 1.23451 1.85291 1.22502 1.25653 1.65843 1.29023 0.97150 0.81706 0.93060 1.20692 0.88171 0.97369 0.92516 1.61578 1.03164 1.48928 1.12535 1.22347 0.94682 0.94420 0.99777 1.21442 0.86663 0.94974 0.97593 1.18897 0.97578 0.89650 0.91401 1.20389 1.02928 0.98022 1.29493 0.94345 1.25368 0.94923 1.00421 0.96072 1.70053 1.09076 1.34920 1.40695 0.86068 0.76872 0.82705 0.78587 1.20676 1.21150 1.20524 1.23030 0.99476 1.01524 0.98899 1.22406 0.91131 1.03105 1.02734 1.71928 0.99738 1.29735 1.21706 0.88157 0.87457 0.88278 0.86499 0.88071 0.92850 0.91466 0.94259 0.92136 0.94854 0.93463 0.89093 0.91391 0.92577 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.01 10.51 71.24 0.75 -0.26 16 2 C 0.16 4.64 8.22 138.46 1.14 5.78 16 3 N -0.42 -13.92 12.16 -60.31 -0.73 -14.65 16 4 O 0.06 2.09 11.31 74.81 0.85 2.94 16 5 C 0.21 6.71 7.12 88.38 0.63 7.34 16 6 C 0.14 4.15 5.58 85.56 0.48 4.63 16 7 N -0.54 -19.40 4.41 -927.02 -4.09 -23.49 16 8 C 0.04 1.16 9.11 127.69 1.16 2.32 16 9 C 0.12 4.71 4.88 86.30 0.42 5.13 16 10 C 0.03 1.17 1.24 -52.93 -0.07 1.10 16 11 C -0.47 -25.06 8.54 25.60 0.22 -24.84 16 12 H 0.04 2.14 7.82 -2.91 -0.02 2.11 16 13 C 0.03 1.69 5.43 84.66 0.46 2.15 16 14 N -0.91 -50.45 12.65 21.45 0.27 -50.18 16 15 Si 0.93 44.36 29.54 68.60 2.03 46.39 16 16 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 17 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 18 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 19 C -0.19 -7.73 8.36 30.62 0.26 -7.47 16 20 C -0.16 -6.94 9.18 30.62 0.28 -6.66 16 21 N -0.50 -14.95 10.82 -303.19 -3.28 -18.23 16 22 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.12 3.24 7.86 -2.39 -0.02 3.22 16 26 H 0.10 2.41 8.12 -2.39 -0.02 2.39 16 27 H 0.05 1.74 6.67 -2.39 -0.02 1.73 16 28 H 0.07 2.36 6.12 -2.38 -0.01 2.35 16 29 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 2.57 7.81 -2.39 -0.02 2.56 16 31 H 0.03 1.15 8.00 -2.38 -0.02 1.13 16 32 H 0.26 13.83 8.32 -92.71 -0.77 13.06 16 33 H 0.09 3.11 8.05 -2.38 -0.02 3.09 16 34 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 35 H 0.06 2.80 8.14 -2.39 -0.02 2.79 16 36 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -62.12 306.11 1.84 -60.28 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: 1.07 Total: 7.71 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: 5.73 Total: -10.78 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -7.83 Total: -106.54 kcal Atomic # 8 Polarization: 2.09 SS G_CDS: 0.85 Total: 2.94 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -62.12 1.84 -60.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602873110.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.849 kcal (2) G-P(sol) polarization free energy of solvation -62.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds