Wall clock time and date at job start Sun Mar 29 2020 22:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00382 * 2 1 4 4 H 1.48498 * 109.47472 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47073 * 300.00444 * 3 2 1 6 6 H 1.48503 * 109.46723 * 59.99514 * 3 2 1 7 7 C 1.37882 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99993 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00006 * 0.02562 * 7 2 1 10 10 C 1.50704 * 109.47175 * 180.02562 * 9 7 2 11 11 C 1.35348 * 126.75126 * 125.24359 * 10 9 7 12 12 N 1.35314 * 106.17075 * 180.12507 * 11 10 9 13 13 C 1.46505 * 125.86472 * 179.90486 * 12 11 10 14 14 H 1.08998 * 109.47069 * 84.56953 * 13 12 11 15 15 C 1.53001 * 109.47403 * 324.56845 * 13 12 11 16 16 C 1.52999 * 109.46952 * 300.00164 * 15 13 12 17 17 C 1.53004 * 109.46960 * 299.99627 * 16 15 13 18 18 C 1.53001 * 109.46984 * 60.00393 * 17 16 15 19 19 C 1.52997 * 109.47140 * 204.56526 * 13 12 11 20 20 H 1.09004 * 109.47105 * 180.02562 * 19 13 12 21 21 O 1.42902 * 109.47279 * 300.00154 * 19 13 12 22 22 N 1.28713 * 108.26424 * 359.64531 * 12 11 10 23 23 N 1.28623 * 110.17967 * 0.22558 * 22 12 11 24 24 H 0.97002 * 120.00104 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47025 * 60.00054 * 9 7 2 26 26 H 1.08994 * 109.47108 * 300.00025 * 9 7 2 27 27 H 1.07997 * 126.91575 * 0.02562 * 11 10 9 28 28 H 1.08997 * 109.47118 * 59.99459 * 15 13 12 29 29 H 1.08993 * 109.47648 * 180.02562 * 15 13 12 30 30 H 1.09002 * 109.47209 * 179.97438 * 16 15 13 31 31 H 1.09000 * 109.47800 * 59.99642 * 16 15 13 32 32 H 1.08996 * 109.47506 * 300.00203 * 17 16 15 33 33 H 1.09004 * 109.46993 * 179.97438 * 17 16 15 34 34 H 1.08999 * 109.47345 * 179.97438 * 18 17 16 35 35 H 1.09004 * 109.47283 * 59.99892 * 18 17 16 36 36 H 0.96703 * 113.99638 * 179.97438 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2303 -3.6447 -0.0015 11 6 2.2802 -4.6673 0.8838 12 7 3.3140 -5.4501 0.4974 13 6 3.7536 -6.6805 1.1603 14 1 3.1588 -7.5198 0.7999 15 6 3.5710 -6.5382 2.6727 16 6 4.4059 -5.3601 3.1786 17 6 5.8824 -5.6092 2.8643 18 6 6.0650 -5.7515 1.3519 19 6 5.2300 -6.9296 0.8460 20 1 5.5570 -7.8452 1.3389 21 8 5.4006 -7.0625 -0.5665 22 7 3.8414 -4.9311 -0.5557 23 7 3.2181 -3.8534 -0.8790 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6240 -2.5575 0.8879 27 1 1.6273 -4.8256 1.7294 28 1 2.5192 -6.3606 2.8966 29 1 3.8984 -7.4533 3.1660 30 1 4.2755 -5.2584 4.2560 31 1 4.0789 -4.4446 2.6854 32 1 6.2095 -6.5245 3.3575 33 1 6.4772 -4.7696 3.2243 34 1 7.1169 -5.9285 1.1280 35 1 5.7380 -4.8360 0.8587 36 1 6.3146 -7.2223 -0.8390 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603262218.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:15 Heat of formation + Delta-G solvation = 36.401979 kcal Electronic energy + Delta-G solvation = -19009.907921 eV Core-core repulsion = 16109.924598 eV Total energy + Delta-G solvation = -2899.983323 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.53199 -39.08773 -35.76473 -33.77378 -32.87117 -31.14245 -30.00192 -29.35093 -27.21961 -23.60058 -23.40035 -22.65162 -21.42230 -20.31051 -19.18166 -17.41929 -16.56653 -16.36886 -15.99053 -15.10475 -14.47572 -14.41341 -14.04202 -13.97630 -13.35340 -13.13509 -12.67240 -12.60482 -12.12318 -11.98015 -11.76996 -11.48722 -10.95575 -10.90938 -10.84195 -10.67496 -10.59908 -10.35020 -9.99463 -9.88799 -9.60014 -9.30126 -9.10104 -8.36970 -7.98017 -5.94287 -3.94138 2.42773 2.87808 3.37788 3.44753 3.51115 3.66377 3.89994 4.19788 4.48078 4.55438 4.72431 4.83348 4.89692 4.99213 5.10316 5.17396 5.25364 5.36266 5.42831 5.56259 5.61164 5.82463 5.87362 5.95973 5.97042 6.09482 6.24636 6.28106 6.49959 7.26383 7.38148 7.59175 7.61266 7.71073 8.04024 8.44395 9.09842 9.53039 9.68348 11.17002 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.029911 B = 0.005721 C = 0.005597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.892726 B = 4892.744139 C = 5001.120587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.895 3.105 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.499 4.499 8 H 0.059 0.941 9 C 0.092 3.908 10 C 0.034 3.966 11 C -0.093 4.093 12 N -0.292 5.292 13 C 0.157 3.843 14 H 0.098 0.902 15 C -0.127 4.127 16 C -0.130 4.130 17 C -0.116 4.116 18 C -0.158 4.158 19 C 0.109 3.891 20 H 0.069 0.931 21 O -0.543 6.543 22 N -0.074 5.074 23 N -0.275 5.275 24 H 0.260 0.740 25 H 0.037 0.963 26 H 0.034 0.966 27 H 0.175 0.825 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.866 -16.601 8.243 20.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.538 4.538 8 H 0.077 0.923 9 C 0.053 3.947 10 C -0.103 4.103 11 C -0.241 4.241 12 N -0.089 5.089 13 C 0.054 3.946 14 H 0.116 0.884 15 C -0.165 4.165 16 C -0.167 4.167 17 C -0.154 4.154 18 C -0.196 4.196 19 C 0.050 3.950 20 H 0.086 0.914 21 O -0.347 6.347 22 N -0.053 5.053 23 N -0.142 5.142 24 H 0.070 0.930 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.193 0.807 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 10.178 -16.536 7.183 20.703 hybrid contribution 0.158 0.789 0.980 1.268 sum 10.336 -15.747 8.163 20.529 Atomic orbital electron populations 1.69958 1.05957 1.26540 1.51472 1.24975 0.94856 0.99174 0.95498 0.86480 0.80213 0.83584 0.77445 1.19747 1.20961 1.21160 1.21095 0.93261 0.89788 1.49607 0.92285 1.17699 0.90952 0.87701 0.98304 1.22941 0.97905 0.97515 0.91964 1.23173 0.98125 0.96472 1.06280 1.47102 1.22140 1.19189 1.20443 1.21519 0.95718 0.84409 0.92951 0.88414 1.21907 1.02258 1.00585 0.91791 1.21642 0.94779 0.98822 1.01504 1.21494 0.96630 1.01845 0.95421 1.22343 0.99917 1.00787 0.96545 1.21797 0.92905 0.97063 0.83285 0.91366 1.86712 1.32330 1.95103 1.20557 1.78392 1.20525 1.05821 1.00537 1.75118 1.07384 1.07786 1.23940 0.93049 0.94475 0.94765 0.80743 0.89843 0.89348 0.90988 0.90663 0.91936 0.91427 0.91426 0.89734 0.77743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.12 13.29 55.43 0.74 -26.39 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.44 29.54 -169.99 -5.02 17.42 16 4 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 7 C -0.50 -14.68 9.09 -34.44 -0.31 -15.00 16 8 H 0.06 1.78 7.74 -52.49 -0.41 1.37 16 9 C 0.09 2.48 5.55 -29.03 -0.16 2.32 16 10 C 0.03 0.80 6.44 -82.78 -0.53 0.27 16 11 C -0.09 -1.75 9.45 -17.05 -0.16 -1.91 16 12 N -0.29 -5.06 2.68 -54.76 -0.15 -5.20 16 13 C 0.16 1.90 3.33 -67.93 -0.23 1.67 16 14 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 15 C -0.13 -1.17 5.07 -26.73 -0.14 -1.30 16 16 C -0.13 -1.39 5.72 -26.73 -0.15 -1.54 16 17 C -0.12 -1.14 5.92 -26.73 -0.16 -1.29 16 18 C -0.16 -1.81 5.35 -26.73 -0.14 -1.95 16 19 C 0.11 1.18 3.06 -26.73 -0.08 1.09 16 20 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 21 O -0.54 -6.84 11.88 -35.23 -0.42 -7.26 16 22 N -0.07 -1.57 9.98 60.35 0.60 -0.97 16 23 N -0.27 -6.81 12.40 33.29 0.41 -6.40 16 24 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.03 0.91 8.12 -51.93 -0.42 0.49 16 27 H 0.18 2.69 7.31 -52.49 -0.38 2.31 16 28 H 0.08 0.74 7.18 -51.93 -0.37 0.36 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 1.09 6.64 -51.93 -0.34 0.75 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 1.35 6.57 -51.93 -0.34 1.01 16 36 H 0.38 3.07 9.08 45.56 0.41 3.49 16 LS Contribution 291.62 15.07 4.39 4.39 Total: -1.00 -35.05 291.62 -5.98 -41.03 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -4.37 Total: -0.51 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -2.16 Total: -16.12 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 1.60 Total: -38.95 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -0.42 Total: -7.26 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -35.05 -5.98 -41.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603262218.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.430 kcal (2) G-P(sol) polarization free energy of solvation -35.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds