Wall clock time and date at job start Sun Mar 29 2020 22:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 C 1.50703 * 109.46925 * 179.97438 * 9 7 2 11 11 C 1.35341 * 126.74682 * 124.71611 * 10 9 7 12 12 N 1.35318 * 106.17554 * 179.84721 * 11 10 9 13 13 C 1.46495 * 125.87023 * 180.18040 * 12 11 10 14 14 H 1.09006 * 109.47369 * 205.29581 * 13 12 11 15 15 C 1.53000 * 109.47746 * 325.29935 * 13 12 11 16 16 C 1.53001 * 109.47499 * 179.97438 * 15 13 12 17 17 C 1.52992 * 109.47078 * 300.00166 * 16 15 13 18 18 C 1.52999 * 109.47573 * 59.99814 * 17 16 15 19 19 C 1.53001 * 109.47070 * 300.00191 * 18 17 16 20 20 H 1.08999 * 109.47083 * 299.99646 * 19 18 17 21 21 O 1.42901 * 109.47443 * 179.97438 * 19 18 17 22 22 N 1.28720 * 108.25825 * 0.41806 * 12 11 10 23 23 N 1.28637 * 110.17869 * 359.73361 * 22 12 11 24 24 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 26 26 H 1.09000 * 109.47083 * 59.99509 * 9 7 2 27 27 H 1.08003 * 126.91593 * 359.97438 * 11 10 9 28 28 H 1.09004 * 109.46505 * 300.00447 * 15 13 12 29 29 H 1.09006 * 109.46975 * 59.99405 * 15 13 12 30 30 H 1.08997 * 109.46560 * 179.97438 * 16 15 13 31 31 H 1.09007 * 109.46775 * 60.00161 * 16 15 13 32 32 H 1.08999 * 109.47049 * 299.99881 * 17 16 15 33 33 H 1.08994 * 109.47387 * 179.97438 * 17 16 15 34 34 H 1.08997 * 109.47646 * 180.02562 * 18 17 16 35 35 H 1.08999 * 109.46878 * 59.99962 * 18 17 16 36 36 H 0.96702 * 114.00250 * 59.99627 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0139 -2.6149 -0.0001 11 6 4.8665 -3.1722 -0.8913 12 7 5.0360 -4.4561 -0.4987 13 6 5.8819 -5.4518 -1.1614 14 1 5.5080 -6.4514 -0.9399 15 6 5.8536 -5.2201 -2.6735 16 6 6.7375 -6.2596 -3.3654 17 6 8.1741 -6.1276 -2.8561 18 6 8.2026 -6.3593 -1.3440 19 6 7.3186 -5.3198 -0.6521 20 1 7.6922 -4.3200 -0.8735 21 8 7.3447 -5.5365 0.7602 22 7 4.3223 -4.6534 0.5542 23 7 3.7004 -3.5747 0.8773 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6796 -0.8894 26 1 3.8746 -0.6807 0.8905 27 1 5.3217 -2.6890 -1.7431 28 1 4.8299 -5.3136 -3.0362 29 1 6.2275 -4.2204 -2.8949 30 1 6.7169 -6.0947 -4.4427 31 1 6.3639 -7.2594 -3.1440 32 1 8.5477 -5.1278 -3.0775 33 1 8.8038 -6.8684 -3.3487 34 1 9.2260 -6.2648 -0.9811 35 1 7.8290 -7.3591 -1.1226 36 1 8.2259 -5.4682 1.1524 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603262219.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:18 Heat of formation + Delta-G solvation = 32.589717 kcal Electronic energy + Delta-G solvation = -18535.933553 eV Core-core repulsion = 15635.784919 eV Total energy + Delta-G solvation = -2900.148635 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.54750 -39.36523 -35.94771 -34.16782 -33.00273 -31.28039 -30.30762 -29.19723 -27.91334 -23.78145 -23.20400 -22.82010 -21.23928 -20.14984 -19.87106 -17.59794 -17.09276 -16.65699 -15.90934 -15.12358 -14.78464 -14.33232 -14.24361 -14.15841 -13.65901 -13.28269 -13.10228 -12.78095 -12.26751 -12.20477 -11.83067 -11.69583 -11.33089 -11.15861 -10.96535 -10.89072 -10.63271 -10.42048 -10.22535 -10.03965 -9.71048 -9.29130 -9.24354 -8.49613 -8.15456 -5.95265 -3.92738 2.28634 2.75059 3.35813 3.42733 3.43548 3.52681 3.65988 4.20741 4.37490 4.48331 4.50288 4.53788 4.70957 4.78485 4.87741 4.93971 5.13199 5.29236 5.37247 5.38900 5.48180 5.54844 5.59689 5.65253 5.75183 5.80392 5.89167 6.06074 6.36253 6.94279 7.17719 7.23444 7.29210 7.37602 7.78483 8.63398 9.13686 9.39280 9.64091 11.18410 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.036555 B = 0.004913 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.786510 B = 5697.893694 C = 5851.537958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.504 4.504 8 H 0.076 0.924 9 C 0.060 3.940 10 C 0.038 3.962 11 C -0.087 4.087 12 N -0.291 5.291 13 C 0.159 3.841 14 H 0.112 0.888 15 C -0.129 4.129 16 C -0.117 4.117 17 C -0.122 4.122 18 C -0.148 4.148 19 C 0.097 3.903 20 H 0.063 0.937 21 O -0.551 6.551 22 N -0.089 5.089 23 N -0.260 5.260 24 H 0.263 0.737 25 H 0.033 0.967 26 H 0.032 0.968 27 H 0.177 0.823 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.686 -11.974 -8.335 25.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.543 4.543 8 H 0.094 0.906 9 C 0.021 3.979 10 C -0.099 4.099 11 C -0.235 4.235 12 N -0.086 5.086 13 C 0.056 3.944 14 H 0.130 0.870 15 C -0.168 4.168 16 C -0.155 4.155 17 C -0.159 4.159 18 C -0.187 4.187 19 C 0.036 3.964 20 H 0.081 0.919 21 O -0.356 6.356 22 N -0.067 5.067 23 N -0.127 5.127 24 H 0.073 0.927 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.194 0.806 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 19.438 -12.962 -7.348 24.491 hybrid contribution 1.374 1.663 -0.826 2.310 sum 20.811 -11.298 -8.174 25.051 Atomic orbital electron populations 1.69907 1.06226 1.26730 1.51244 1.24974 0.94751 0.98828 0.94812 0.86827 0.80248 0.83862 0.78636 1.20138 1.21348 1.19034 1.20940 0.88223 0.94838 1.50283 0.90574 1.18131 0.97704 0.84724 0.97339 1.22438 0.96112 0.99023 0.92365 1.23155 1.08476 0.86130 1.05766 1.47110 1.31960 1.09283 1.20283 1.21478 0.88310 0.92499 0.92100 0.87013 1.21933 1.02441 1.01211 0.91185 1.21536 0.94450 0.99095 1.00408 1.21559 0.97046 1.02583 0.94747 1.22270 1.00076 1.00270 0.96067 1.22134 0.93962 0.98177 0.82118 0.91947 1.86686 1.34508 1.94630 1.19806 1.78280 1.05974 1.21413 1.01069 1.75110 1.17819 0.96093 1.23709 0.92741 0.94854 0.94997 0.80564 0.89611 0.90183 0.90488 0.91146 0.91396 0.91037 0.90865 0.90504 0.77479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.58 13.96 55.43 0.77 -27.81 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 7 C -0.50 -15.12 9.64 -34.44 -0.33 -15.45 16 8 H 0.08 2.55 7.98 -52.49 -0.42 2.13 16 9 C 0.06 1.51 4.62 -29.03 -0.13 1.38 16 10 C 0.04 0.89 6.44 -82.78 -0.53 0.36 16 11 C -0.09 -1.61 10.60 -17.05 -0.18 -1.79 16 12 N -0.29 -5.13 3.12 -54.76 -0.17 -5.30 16 13 C 0.16 1.93 2.82 -67.93 -0.19 1.74 16 14 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 15 C -0.13 -1.17 4.84 -26.73 -0.13 -1.30 16 16 C -0.12 -0.73 5.92 -26.73 -0.16 -0.89 16 17 C -0.12 -0.67 5.92 -26.74 -0.16 -0.83 16 18 C -0.15 -0.97 5.55 -26.73 -0.15 -1.12 16 19 C 0.10 0.96 3.12 -26.73 -0.08 0.88 16 20 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 21 O -0.55 -6.64 13.18 -35.23 -0.46 -7.10 16 22 N -0.09 -1.97 13.17 60.35 0.79 -1.17 16 23 N -0.26 -6.56 12.40 33.29 0.41 -6.15 16 24 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 25 H 0.03 0.78 7.18 -51.93 -0.37 0.41 16 26 H 0.03 0.80 7.57 -51.93 -0.39 0.41 16 27 H 0.18 2.54 7.30 -52.48 -0.38 2.16 16 28 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.08 0.68 7.17 -51.93 -0.37 0.31 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.38 2.76 9.08 45.56 0.41 3.17 16 LS Contribution 296.85 15.07 4.47 4.47 Total: -1.00 -36.96 296.85 -5.49 -42.45 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -4.50 Total: -1.32 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -2.15 Total: -15.12 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 1.81 Total: -40.43 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -0.46 Total: -7.10 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -36.96 -5.49 -42.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603262219.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.040 kcal (2) G-P(sol) polarization free energy of solvation -36.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds