Wall clock time and date at job start Sun Mar 29 2020 22:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 C 1.50703 * 109.46925 * 179.97438 * 9 7 2 11 11 C 1.35341 * 126.74682 * 124.71611 * 10 9 7 12 12 N 1.35318 * 106.17554 * 179.84721 * 11 10 9 13 13 C 1.46495 * 125.87023 * 180.18040 * 12 11 10 14 14 H 1.09006 * 109.47369 * 205.29581 * 13 12 11 15 15 C 1.53000 * 109.47746 * 325.29935 * 13 12 11 16 16 C 1.53001 * 109.47499 * 179.97438 * 15 13 12 17 17 C 1.52992 * 109.47078 * 300.00166 * 16 15 13 18 18 C 1.52999 * 109.47573 * 59.99814 * 17 16 15 19 19 C 1.53001 * 109.47070 * 300.00191 * 18 17 16 20 20 H 1.08999 * 109.47083 * 299.99646 * 19 18 17 21 21 O 1.42901 * 109.47443 * 179.97438 * 19 18 17 22 22 N 1.28720 * 108.25825 * 0.41806 * 12 11 10 23 23 N 1.28637 * 110.17869 * 359.73361 * 22 12 11 24 24 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 26 26 H 1.09000 * 109.47083 * 59.99509 * 9 7 2 27 27 H 1.08003 * 126.91593 * 359.97438 * 11 10 9 28 28 H 1.09004 * 109.46505 * 300.00447 * 15 13 12 29 29 H 1.09006 * 109.46975 * 59.99405 * 15 13 12 30 30 H 1.08997 * 109.46560 * 179.97438 * 16 15 13 31 31 H 1.09007 * 109.46775 * 60.00161 * 16 15 13 32 32 H 1.08999 * 109.47049 * 299.99881 * 17 16 15 33 33 H 1.08994 * 109.47387 * 179.97438 * 17 16 15 34 34 H 1.08997 * 109.47646 * 180.02562 * 18 17 16 35 35 H 1.08999 * 109.46878 * 59.99962 * 18 17 16 36 36 H 0.96702 * 114.00250 * 59.99627 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0139 -2.6149 -0.0001 11 6 4.8665 -3.1722 -0.8913 12 7 5.0360 -4.4561 -0.4987 13 6 5.8819 -5.4518 -1.1614 14 1 5.5080 -6.4514 -0.9399 15 6 5.8536 -5.2201 -2.6735 16 6 6.7375 -6.2596 -3.3654 17 6 8.1741 -6.1276 -2.8561 18 6 8.2026 -6.3593 -1.3440 19 6 7.3186 -5.3198 -0.6521 20 1 7.6922 -4.3200 -0.8735 21 8 7.3447 -5.5365 0.7602 22 7 4.3223 -4.6534 0.5542 23 7 3.7004 -3.5747 0.8773 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6796 -0.8894 26 1 3.8746 -0.6807 0.8905 27 1 5.3217 -2.6890 -1.7431 28 1 4.8299 -5.3136 -3.0362 29 1 6.2275 -4.2204 -2.8949 30 1 6.7169 -6.0947 -4.4427 31 1 6.3639 -7.2594 -3.1440 32 1 8.5477 -5.1278 -3.0775 33 1 8.8038 -6.8684 -3.3487 34 1 9.2260 -6.2648 -0.9811 35 1 7.8290 -7.3591 -1.1226 36 1 8.2259 -5.4682 1.1524 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603262219.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:17 Heat of formation + Delta-G solvation = 3.268681 kcal Electronic energy + Delta-G solvation = -18537.205009 eV Core-core repulsion = 15635.784919 eV Total energy + Delta-G solvation = -2901.420090 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.10344 -40.16032 -36.75396 -35.76752 -34.73589 -33.16590 -31.06018 -30.29551 -29.69654 -25.17564 -24.74323 -23.67108 -22.43950 -21.65015 -20.77283 -18.89831 -18.44063 -18.29532 -17.21841 -16.31430 -16.04363 -15.68838 -15.46439 -15.02346 -14.75339 -14.52209 -14.24289 -14.04810 -13.81326 -13.56039 -12.88708 -12.84398 -12.53479 -12.43709 -12.28962 -11.92620 -11.79531 -11.62996 -11.60825 -11.47998 -11.39063 -10.96155 -10.76845 -10.71424 -9.86467 -8.23920 -6.29504 0.78574 1.41517 1.45348 1.51847 1.56518 1.77115 2.41462 2.90100 3.09994 3.44701 3.57433 3.74545 3.80572 3.98018 4.09707 4.12667 4.15973 4.27664 4.37315 4.39334 4.59465 4.75348 4.83243 4.90077 5.04582 5.05692 5.09285 5.21979 5.24789 5.34158 5.38894 5.44179 5.62544 5.86126 6.33180 6.75496 6.76943 7.32131 7.74547 8.94114 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.036555 B = 0.004913 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.786510 B = 5697.893694 C = 5851.537958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.002 3.998 3 Si 0.960 3.040 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.229 1.229 7 C -0.519 4.519 8 H 0.015 0.985 9 C 0.068 3.932 10 C -0.008 4.008 11 C -0.054 4.054 12 N -0.272 5.272 13 C 0.142 3.858 14 H 0.104 0.896 15 C -0.125 4.125 16 C -0.112 4.112 17 C -0.118 4.118 18 C -0.139 4.139 19 C 0.098 3.902 20 H 0.069 0.931 21 O -0.585 6.585 22 N -0.116 5.116 23 N -0.317 5.317 24 H 0.267 0.733 25 H 0.063 0.937 26 H 0.032 0.968 27 H 0.226 0.774 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.514 -11.234 -10.514 28.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.194 4.194 3 Si 0.782 3.218 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.152 1.152 7 C -0.557 4.557 8 H 0.034 0.966 9 C 0.029 3.971 10 C -0.146 4.146 11 C -0.204 4.204 12 N -0.067 5.067 13 C 0.042 3.958 14 H 0.122 0.878 15 C -0.163 4.163 16 C -0.150 4.150 17 C -0.156 4.156 18 C -0.177 4.177 19 C 0.038 3.962 20 H 0.087 0.913 21 O -0.393 6.393 22 N -0.094 5.094 23 N -0.183 5.183 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.050 0.950 27 H 0.243 0.757 28 H 0.091 0.909 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 23.306 -12.286 -9.523 28.014 hybrid contribution 0.173 1.250 -0.174 1.274 sum 23.478 -11.036 -9.697 27.696 Atomic orbital electron populations 1.70094 1.08676 1.28292 1.52603 1.26094 0.95720 1.03767 0.93815 0.85533 0.79932 0.77153 0.79228 1.19647 1.20710 1.15204 1.21128 0.91110 0.92821 1.50687 0.96609 1.17973 0.94115 0.86600 0.98389 1.22444 0.98969 0.98707 0.94528 1.23645 1.05872 0.85878 1.04989 1.47600 1.30426 1.10020 1.18671 1.22166 0.88900 0.90779 0.93981 0.87808 1.21996 1.02634 1.03087 0.88623 1.21552 0.94385 0.98033 1.01029 1.21578 0.96582 1.03748 0.93666 1.22215 1.00144 0.98655 0.96667 1.22231 0.92567 0.99813 0.81552 0.91260 1.86640 1.36567 1.94843 1.21274 1.78154 1.07346 1.20749 1.03180 1.75018 1.19864 0.97436 1.25964 0.92409 0.91938 0.95008 0.75743 0.90918 0.88834 0.88776 0.91141 0.90499 0.89228 0.88858 0.90948 0.75362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.72 13.96 21.45 0.30 -62.42 16 2 C 0.00 0.12 5.47 84.65 0.46 0.58 16 3 Si 0.96 44.33 27.47 68.60 1.88 46.21 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 6 H -0.23 -9.21 6.54 99.48 0.65 -8.56 16 7 C -0.52 -32.25 9.64 25.60 0.25 -32.00 16 8 H 0.02 1.12 7.98 -2.92 -0.02 1.10 16 9 C 0.07 3.41 4.62 29.11 0.13 3.54 16 10 C -0.01 -0.37 6.44 41.60 0.27 -0.10 16 11 C -0.05 -1.89 10.60 83.49 0.89 -1.00 16 12 N -0.27 -9.39 3.12 -327.17 -1.02 -10.41 16 13 C 0.14 3.22 2.82 44.99 0.13 3.35 16 14 H 0.10 2.51 8.14 -2.38 -0.02 2.49 16 15 C -0.12 -1.91 4.84 30.59 0.15 -1.76 16 16 C -0.11 -1.00 5.92 30.59 0.18 -0.82 16 17 C -0.12 -0.78 5.92 30.59 0.18 -0.60 16 18 C -0.14 -1.33 5.55 30.59 0.17 -1.16 16 19 C 0.10 1.71 3.12 30.60 0.10 1.81 16 20 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 21 O -0.58 -13.35 13.18 -148.98 -1.96 -15.32 16 22 N -0.12 -5.27 13.17 37.02 0.49 -4.79 16 23 N -0.32 -16.66 12.40 -48.61 -0.60 -17.26 16 24 H 0.27 16.16 8.31 -92.71 -0.77 15.39 16 25 H 0.06 2.73 7.18 -2.39 -0.02 2.71 16 26 H 0.03 1.57 7.57 -2.39 -0.02 1.55 16 27 H 0.23 5.46 7.30 -2.91 -0.02 5.44 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.09 1.19 7.17 -2.38 -0.02 1.17 16 30 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.40 5.16 9.08 -74.06 -0.67 4.48 16 Total: -1.00 -86.53 296.85 2.33 -84.19 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 0.35 Total: 7.96 kcal Atomic # 6 Polarization: -31.06 SS G_CDS: 2.90 Total: -28.16 kcal Atomic # 7 Polarization: -94.04 SS G_CDS: -0.84 Total: -94.88 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -1.96 Total: -15.32 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.88 Total: 46.21 kcal Total: -86.53 2.33 -84.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603262219.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.461 kcal (2) G-P(sol) polarization free energy of solvation -86.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds