Wall clock time and date at job start Sun Mar 29 2020 23:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47158 * 2 1 4 4 C 1.50705 * 109.46965 * 180.02562 * 3 2 1 5 5 C 1.35367 * 126.38293 * 275.29569 * 4 3 2 6 6 C 1.41502 * 105.49831 * 180.14197 * 5 4 3 7 7 C 1.47717 * 126.51647 * 179.84512 * 6 5 4 8 8 O 1.21575 * 119.99837 * 5.97688 * 7 6 5 9 9 N 1.34770 * 119.99808 * 185.97010 * 7 6 5 10 10 C 1.46490 * 120.00410 * 5.37846 * 9 7 6 11 11 C 1.46503 * 119.99795 * 185.09625 * 9 7 6 12 12 C 1.50695 * 109.47638 * 270.28128 * 11 9 7 13 13 H 1.07999 * 120.00099 * 0.02562 * 12 11 9 14 14 C 1.37880 * 120.00183 * 179.97438 * 12 11 9 15 15 N 1.31517 * 119.99688 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99847 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.46774 * 90.00487 * 16 14 12 18 18 H 1.48498 * 109.46733 * 209.99844 * 16 14 12 19 19 H 1.48491 * 109.47251 * 330.00170 * 16 14 12 20 20 N 1.31801 * 106.96584 * 359.58396 * 6 5 4 21 21 N 1.28463 * 110.07467 * 0.25832 * 20 6 5 22 22 H 0.97007 * 124.88679 * 179.97438 * 21 20 6 23 23 H 1.08995 * 109.47536 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47386 * 300.00356 * 1 2 3 25 25 H 1.09000 * 109.47233 * 60.00337 * 1 2 3 26 26 H 1.08994 * 109.46911 * 239.99450 * 2 1 3 27 27 H 1.09010 * 109.46819 * 120.00012 * 2 1 3 28 28 H 1.08994 * 109.47659 * 59.99908 * 3 2 1 29 29 H 1.09004 * 109.47437 * 299.99324 * 3 2 1 30 30 H 1.07994 * 127.24888 * 359.97438 * 5 4 3 31 31 H 1.08999 * 109.47660 * 275.08042 * 10 9 7 32 32 H 1.09003 * 109.47090 * 35.08141 * 10 9 7 33 33 H 1.09004 * 109.47594 * 155.07893 * 10 9 7 34 34 H 1.09005 * 109.46960 * 30.28509 * 11 9 7 35 35 H 1.09000 * 109.47210 * 150.27391 * 11 9 7 36 36 H 0.97000 * 119.99624 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.3504 1.3416 1.0842 6 6 5.6723 1.3916 0.5816 7 6 6.9171 1.3224 1.3740 8 8 6.8658 1.1026 2.5686 9 7 8.1095 1.5030 0.7725 10 6 8.1669 1.8839 -0.6408 11 6 9.3484 1.3244 1.5338 12 6 9.7446 2.6350 2.1634 13 1 9.1344 3.5131 2.0120 14 6 10.8855 2.7128 2.9337 15 7 11.2309 3.8565 3.4835 16 14 11.9398 1.1935 3.1973 17 1 12.9667 1.1119 2.1276 18 1 12.6089 1.2789 4.5203 19 1 11.0821 -0.0179 3.1536 20 7 5.5817 1.5057 -0.7283 21 7 4.3476 1.5367 -1.0839 22 1 4.0358 1.6168 -1.9990 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 1.6767 1.9563 0.8899 29 1 1.6768 1.9563 -0.8901 30 1 4.0465 1.2462 2.1161 31 1 8.1059 0.9896 -1.2610 32 1 7.3318 2.5448 -0.8732 33 1 9.1057 2.4008 -0.8401 34 1 9.1913 0.5794 2.3139 35 1 10.1407 0.9884 0.8649 36 1 12.0334 3.9112 4.0257 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604529955.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:55 Heat of formation + Delta-G solvation = 36.026277 kcal Electronic energy + Delta-G solvation = -18055.175482 eV Core-core repulsion = 15155.175867 eV Total energy + Delta-G solvation = -2899.999614 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.55157 -38.59736 -35.57590 -34.81609 -32.54008 -31.61779 -30.98454 -28.42963 -26.59813 -25.90456 -23.87095 -22.19267 -21.42387 -20.92994 -18.30305 -17.66496 -16.86809 -16.10944 -15.62443 -15.36805 -15.14206 -14.37326 -13.99021 -13.69998 -13.61334 -13.28012 -12.93324 -12.48976 -12.29342 -12.18958 -11.93699 -11.75595 -11.60141 -11.46578 -11.05240 -10.92599 -10.50781 -10.31070 -10.04470 -9.49723 -9.19669 -9.13585 -8.85286 -8.52370 -7.58767 -6.01534 -3.99739 1.87077 2.30151 2.93725 3.32687 3.40466 3.45522 3.88127 4.08141 4.44703 4.46454 4.57485 4.72831 4.79050 5.04279 5.15556 5.29921 5.39433 5.47203 5.49966 5.69631 5.75447 5.80758 5.95815 5.97873 6.06355 6.15845 6.40014 6.54624 6.75734 7.01665 7.09185 7.44675 7.67987 8.00373 8.34695 8.54293 9.00222 9.06138 9.58622 11.12058 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.046329 B = 0.004340 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.228130 B = 6450.328220 C = 6627.630236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.048 4.048 4 C 0.008 3.992 5 C -0.177 4.177 6 C 0.007 3.993 7 C 0.587 3.413 8 O -0.531 6.531 9 N -0.584 5.584 10 C 0.091 3.909 11 C 0.216 3.784 12 C -0.526 4.526 13 H 0.075 0.925 14 C 0.071 3.929 15 N -0.899 5.899 16 Si 0.875 3.125 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.263 1.263 20 N -0.258 5.258 21 N -0.390 5.390 22 H 0.439 0.561 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.160 0.840 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.041 0.959 35 H 0.028 0.972 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.090 -6.601 -11.907 23.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.087 4.087 4 C -0.117 4.117 5 C -0.205 4.205 6 C -0.155 4.155 7 C 0.371 3.629 8 O -0.406 6.406 9 N -0.315 5.315 10 C -0.053 4.053 11 C 0.096 3.904 12 C -0.565 4.565 13 H 0.093 0.907 14 C -0.131 4.131 15 N -0.537 5.537 16 Si 0.702 3.298 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.188 1.188 20 N -0.094 5.094 21 N -0.104 5.104 22 H 0.283 0.717 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.109 0.891 29 H 0.092 0.908 30 H 0.177 0.823 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.046 0.954 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.250 -6.557 -12.058 22.835 hybrid contribution 0.064 -0.553 0.301 0.633 sum -18.186 -7.110 -11.758 22.793 Atomic orbital electron populations 1.21781 0.95377 1.01914 1.01938 1.21546 0.95813 0.95695 1.02896 1.20178 0.86618 0.98064 1.03829 1.21343 0.94750 1.08054 0.87584 1.21514 0.90660 1.08593 0.99698 1.22300 0.95746 1.07758 0.89647 1.16910 0.81504 0.78424 0.86015 1.90768 1.86081 1.50045 1.13726 1.47699 1.06411 1.66073 1.11270 1.21771 1.02737 0.99644 0.81172 1.19720 0.80555 0.98488 0.91687 1.21346 1.09205 0.95200 1.30710 0.90692 1.24861 0.97293 0.95939 0.94982 1.69905 1.25438 1.24802 1.33595 0.86855 0.80814 0.84176 0.77973 1.20118 1.20953 1.18773 1.73846 1.00460 1.19641 1.15424 1.43411 1.03366 1.54086 1.09488 0.71714 0.92530 0.92390 0.92765 0.92066 0.91077 0.89133 0.90849 0.82281 0.93610 0.90952 0.91175 0.94094 0.95393 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.48 16 2 C -0.12 -0.84 5.92 -26.74 -0.16 -1.00 16 3 C -0.05 -0.35 5.77 -27.88 -0.16 -0.51 16 4 C 0.01 0.09 6.48 -82.21 -0.53 -0.44 16 5 C -0.18 -2.71 10.73 -39.36 -0.42 -3.13 16 6 C 0.01 0.13 6.75 -82.77 -0.56 -0.43 16 7 C 0.59 13.55 7.66 -12.39 -0.09 13.46 16 8 O -0.53 -14.11 16.57 5.30 0.09 -14.02 16 9 N -0.58 -13.38 2.86 -184.13 -0.53 -13.90 16 10 C 0.09 1.66 9.31 59.84 0.56 2.21 16 11 C 0.22 5.58 4.16 -5.19 -0.02 5.56 16 12 C -0.53 -15.76 9.94 -34.44 -0.34 -16.10 16 13 H 0.07 2.47 8.06 -52.49 -0.42 2.05 16 14 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 15 N -0.90 -28.41 13.96 55.43 0.77 -27.64 16 16 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 18 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 20 N -0.26 -3.96 9.01 33.42 0.30 -3.66 16 21 N -0.39 -4.35 6.83 33.50 0.23 -4.13 16 22 H 0.44 3.07 8.96 -190.44 -1.71 1.36 16 23 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 28 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.16 2.35 8.06 -52.49 -0.42 1.92 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.26 5.94 -51.93 -0.31 0.95 16 33 H 0.07 1.27 8.03 -51.93 -0.42 0.85 16 34 H 0.04 1.12 6.56 -51.93 -0.34 0.78 16 35 H 0.03 0.67 7.50 -51.93 -0.39 0.28 16 36 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 306.11 15.07 4.61 4.61 Total: -1.00 -36.13 306.11 -7.21 -43.34 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -6.56 Total: -3.14 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -1.46 Total: 1.17 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: 0.78 Total: -49.33 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.09 Total: -14.02 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -36.13 -7.21 -43.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604529955.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.367 kcal (2) G-P(sol) polarization free energy of solvation -36.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds