Wall clock time and date at job start Sun Mar 29 2020 22:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.47204 * 109.50128 * 2 1 4 4 N 2.60798 * 109.50244 * 0.02562 * 2 1 3 5 5 C 1.53116 * 109.50095 * 239.88639 * 2 1 3 6 6 C 1.53121 * 109.16265 * 182.40259 * 5 2 1 7 7 C 1.53043 * 109.27373 * 57.64910 * 6 5 2 8 8 N 1.46841 * 109.52898 * 300.82302 * 7 6 5 9 9 C 1.46895 * 111.00443 * 185.83779 * 8 7 6 10 10 C 1.50691 * 109.47410 * 169.39926 * 9 8 7 11 11 O 1.21294 * 120.00489 * 353.73421 * 10 9 8 12 12 N 1.34779 * 120.00379 * 173.72915 * 10 9 8 13 13 C 1.37097 * 120.00373 * 179.97438 * 12 10 9 14 14 H 1.07995 * 119.99645 * 0.02562 * 13 12 10 15 15 C 1.38947 * 120.00051 * 180.27903 * 13 12 10 16 16 N 1.31418 * 119.99915 * 359.72724 * 15 13 12 17 17 Si 1.86802 * 120.00126 * 179.72660 * 15 13 12 18 18 H 1.48504 * 109.46925 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47198 * 119.99734 * 17 15 13 20 20 H 1.48497 * 109.47033 * 239.99998 * 17 15 13 21 21 C 1.46853 * 111.19703 * 61.74081 * 8 7 6 22 22 H 1.08995 * 109.46913 * 299.91989 * 1 2 3 23 23 H 1.09004 * 109.46802 * 59.91750 * 1 2 3 24 24 H 1.08996 * 109.47078 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.52315 * 302.30384 * 5 2 1 26 26 H 1.09000 * 109.52892 * 62.50161 * 5 2 1 27 27 H 1.08995 * 109.50725 * 177.59082 * 6 5 2 28 28 H 1.08997 * 109.50214 * 297.67869 * 6 5 2 29 29 H 1.09001 * 109.45914 * 180.80650 * 7 6 5 30 30 H 1.09004 * 109.45889 * 60.84514 * 7 6 5 31 31 H 1.09010 * 109.46867 * 49.39836 * 9 8 7 32 32 H 1.08998 * 109.47509 * 289.40292 * 9 8 7 33 33 H 0.97003 * 119.99454 * 0.02562 * 12 10 9 34 34 H 0.96999 * 119.99252 * 180.02562 * 16 15 13 35 35 H 1.09003 * 109.45659 * 58.27244 * 21 8 7 36 36 H 1.08990 * 109.46260 * 178.25402 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0215 1.3876 0.0000 4 7 2.4007 2.4584 0.0011 5 6 2.0412 -0.7241 -1.2485 6 6 3.5712 -0.7723 -1.2106 7 6 4.0230 -1.4729 0.0728 8 7 3.5094 -0.7417 1.2381 9 6 4.0373 -1.3050 2.4878 10 6 3.7058 -0.3841 3.6335 11 8 3.1917 0.6930 3.4168 12 7 3.9803 -0.7571 4.8992 13 6 3.6791 0.0810 5.9415 14 1 3.2215 1.0400 5.7484 15 6 3.9674 -0.3012 7.2459 16 7 4.5239 -1.4683 7.4809 17 14 3.5641 0.8440 8.6656 18 1 2.9466 2.0874 8.1384 19 1 2.6138 0.1728 9.5883 20 1 4.8106 1.1819 9.3984 21 6 2.0410 -0.7230 1.2483 22 1 -0.3633 0.5126 0.8907 23 1 -0.3633 0.5151 -0.8893 24 1 -0.3633 -1.0276 -0.0005 25 1 1.6453 -1.7395 -1.2684 26 1 1.7157 -0.1877 -2.1398 27 1 3.9395 -1.3241 -2.0754 28 1 3.9678 0.2428 -1.2306 29 1 5.1121 -1.4961 0.1098 30 1 3.6375 -2.4924 0.0849 31 1 5.1192 -1.4125 2.4093 32 1 3.5871 -2.2818 2.6648 33 1 4.3916 -1.6183 5.0726 34 1 4.7248 -1.7351 8.3916 35 1 1.6649 -1.7461 1.2549 36 1 1.6906 -0.2014 2.1388 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612161644.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:27 Heat of formation + Delta-G solvation = -12.823007 kcal Electronic energy + Delta-G solvation = -18676.284594 eV Core-core repulsion = 15774.166715 eV Total energy + Delta-G solvation = -2902.117878 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.81649 -37.93384 -35.77539 -34.11481 -33.64546 -31.98617 -31.19577 -27.63517 -26.74005 -24.72221 -23.03370 -22.74132 -20.75791 -19.15825 -17.83964 -16.67883 -15.94421 -15.55146 -14.94666 -14.68599 -14.58022 -13.95034 -13.72285 -13.67190 -13.44542 -13.19905 -12.80002 -12.36476 -12.13423 -12.06666 -11.88528 -11.62196 -11.51384 -11.41963 -11.22845 -11.01342 -10.89874 -10.39911 -10.33237 -10.31637 -10.19945 -9.46623 -8.43594 -7.96038 -7.87245 -6.40403 -3.80782 3.17432 3.23818 3.28056 3.28404 3.35705 3.89302 3.92855 4.15329 4.26608 4.64921 4.74020 4.91417 4.98824 5.17008 5.25744 5.30833 5.46025 5.52219 5.59102 5.62660 5.69144 5.76655 5.78009 5.81427 5.96831 6.02297 6.07202 6.19826 6.30286 6.32744 7.21643 7.35197 7.57193 8.07959 8.08793 8.63889 9.20440 9.56520 10.08700 10.77490 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.032762 B = 0.005322 C = 0.004956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.448371 B = 5260.033925 C = 5648.253170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.041 3.959 3 C 0.235 3.765 4 N -0.438 5.438 5 C -0.108 4.108 6 C -0.121 4.121 7 C 0.054 3.946 8 N -0.519 5.519 9 C 0.048 3.952 10 C 0.441 3.559 11 O -0.573 6.573 12 N -0.565 5.565 13 C -0.296 4.296 14 H 0.103 0.897 15 C 0.022 3.978 16 N -0.903 5.903 17 Si 0.928 3.072 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.065 3.935 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.035 0.965 31 H 0.090 0.910 32 H 0.049 0.951 33 H 0.391 0.609 34 H 0.270 0.730 35 H 0.045 0.955 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.826 -6.209 -14.996 16.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.038 3.962 3 C -0.084 4.084 4 N -0.112 5.112 5 C -0.147 4.147 6 C -0.159 4.159 7 C -0.074 4.074 8 N -0.243 5.243 9 C -0.083 4.083 10 C 0.226 3.774 11 O -0.457 6.457 12 N -0.203 5.203 13 C -0.426 4.426 14 H 0.121 0.879 15 C -0.179 4.179 16 N -0.544 5.544 17 Si 0.755 3.245 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.064 4.064 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.093 0.907 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.053 0.947 31 H 0.108 0.892 32 H 0.067 0.933 33 H 0.225 0.775 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.371 -3.439 -14.986 15.985 hybrid contribution -0.134 -1.319 1.094 1.719 sum -4.505 -4.758 -13.892 15.360 Atomic orbital electron populations 1.21839 0.91562 1.03307 1.03238 1.18313 0.95880 0.84452 0.97603 1.28425 0.92987 0.93997 0.92952 1.81095 1.08588 1.13076 1.08464 1.21706 0.96353 1.00672 0.95949 1.21637 0.95208 1.02001 0.97011 1.22137 1.00249 0.94772 0.90291 1.61421 1.07738 1.53955 1.01204 1.21839 1.00875 0.95950 0.89638 1.19783 0.85346 0.88661 0.83581 1.90539 1.47428 1.23686 1.84021 1.41882 1.54701 1.19204 1.04469 1.19740 1.37490 1.00900 0.84472 0.87930 1.25242 0.97095 0.96863 0.98742 1.69623 1.42924 1.20109 1.21775 0.85821 0.78075 0.80071 0.80521 1.19252 1.20778 1.20766 1.22271 0.87769 0.98555 0.97815 0.91262 0.91660 0.90690 0.90175 0.91051 0.90980 0.91167 0.90618 0.94730 0.89158 0.93310 0.77543 0.91979 0.93716 0.87675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.44 37.16 0.31 -1.04 16 2 C 0.04 0.52 0.72 -157.21 -0.11 0.40 16 3 C 0.23 3.94 12.35 -20.76 -0.26 3.69 16 4 N -0.44 -8.70 18.54 42.15 0.78 -7.92 16 5 C -0.11 -1.02 4.77 -26.61 -0.13 -1.14 16 6 C -0.12 -1.27 5.83 -26.65 -0.16 -1.42 16 7 C 0.05 0.64 5.46 -3.83 -0.02 0.62 16 8 N -0.52 -8.33 3.94 -236.12 -0.93 -9.26 16 9 C 0.05 0.83 5.45 -4.98 -0.03 0.81 16 10 C 0.44 10.32 7.31 -10.99 -0.08 10.24 16 11 O -0.57 -15.54 14.29 5.55 0.08 -15.46 16 12 N -0.57 -14.24 5.29 -10.97 -0.06 -14.30 16 13 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 14 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 15 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 16 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 17 Si 0.93 21.25 29.55 -169.99 -5.02 16.23 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 C 0.06 0.96 3.81 -3.83 -0.01 0.95 16 22 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.91 7.36 -51.93 -0.38 0.53 16 29 H 0.08 0.87 8.01 -51.93 -0.42 0.45 16 30 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 1.44 7.98 -51.92 -0.41 1.02 16 32 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 33 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 34 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 35 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.11 1.97 6.06 -51.93 -0.31 1.66 16 LS Contribution 301.31 15.07 4.54 4.54 Total: -1.00 -33.32 301.31 -5.77 -39.09 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -5.16 Total: 5.77 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -0.72 Total: 5.15 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.52 Total: -55.32 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: 0.08 Total: -15.46 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.32 -5.77 -39.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612161644.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.265 kcal (2) G-P(sol) polarization free energy of solvation -33.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds