Wall clock time and date at job start Sun Mar 29 2020 22:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.47204 * 109.50128 * 2 1 4 4 N 2.60798 * 109.50244 * 0.02562 * 2 1 3 5 5 C 1.53116 * 109.50095 * 239.88639 * 2 1 3 6 6 C 1.53121 * 109.16265 * 182.40259 * 5 2 1 7 7 C 1.53043 * 109.27373 * 57.64910 * 6 5 2 8 8 N 1.46841 * 109.52898 * 300.82302 * 7 6 5 9 9 C 1.46895 * 111.00443 * 185.83779 * 8 7 6 10 10 C 1.50691 * 109.47410 * 169.39926 * 9 8 7 11 11 O 1.21294 * 120.00489 * 353.73421 * 10 9 8 12 12 N 1.34779 * 120.00379 * 173.72915 * 10 9 8 13 13 C 1.37097 * 120.00373 * 179.97438 * 12 10 9 14 14 H 1.07995 * 119.99645 * 0.02562 * 13 12 10 15 15 C 1.38947 * 120.00051 * 180.27903 * 13 12 10 16 16 N 1.31418 * 119.99915 * 359.72724 * 15 13 12 17 17 Si 1.86802 * 120.00126 * 179.72660 * 15 13 12 18 18 H 1.48504 * 109.46925 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47198 * 119.99734 * 17 15 13 20 20 H 1.48497 * 109.47033 * 239.99998 * 17 15 13 21 21 C 1.46853 * 111.19703 * 61.74081 * 8 7 6 22 22 H 1.08995 * 109.46913 * 299.91989 * 1 2 3 23 23 H 1.09004 * 109.46802 * 59.91750 * 1 2 3 24 24 H 1.08996 * 109.47078 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.52315 * 302.30384 * 5 2 1 26 26 H 1.09000 * 109.52892 * 62.50161 * 5 2 1 27 27 H 1.08995 * 109.50725 * 177.59082 * 6 5 2 28 28 H 1.08997 * 109.50214 * 297.67869 * 6 5 2 29 29 H 1.09001 * 109.45914 * 180.80650 * 7 6 5 30 30 H 1.09004 * 109.45889 * 60.84514 * 7 6 5 31 31 H 1.09010 * 109.46867 * 49.39836 * 9 8 7 32 32 H 1.08998 * 109.47509 * 289.40292 * 9 8 7 33 33 H 0.97003 * 119.99454 * 0.02562 * 12 10 9 34 34 H 0.96999 * 119.99252 * 180.02562 * 16 15 13 35 35 H 1.09003 * 109.45659 * 58.27244 * 21 8 7 36 36 H 1.08990 * 109.46260 * 178.25402 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0215 1.3876 0.0000 4 7 2.4007 2.4584 0.0011 5 6 2.0412 -0.7241 -1.2485 6 6 3.5712 -0.7723 -1.2106 7 6 4.0230 -1.4729 0.0728 8 7 3.5094 -0.7417 1.2381 9 6 4.0373 -1.3050 2.4878 10 6 3.7058 -0.3841 3.6335 11 8 3.1917 0.6930 3.4168 12 7 3.9803 -0.7571 4.8992 13 6 3.6791 0.0810 5.9415 14 1 3.2215 1.0400 5.7484 15 6 3.9674 -0.3012 7.2459 16 7 4.5239 -1.4683 7.4809 17 14 3.5641 0.8440 8.6656 18 1 2.9466 2.0874 8.1384 19 1 2.6138 0.1728 9.5883 20 1 4.8106 1.1819 9.3984 21 6 2.0410 -0.7230 1.2483 22 1 -0.3633 0.5126 0.8907 23 1 -0.3633 0.5151 -0.8893 24 1 -0.3633 -1.0276 -0.0005 25 1 1.6453 -1.7395 -1.2684 26 1 1.7157 -0.1877 -2.1398 27 1 3.9395 -1.3241 -2.0754 28 1 3.9678 0.2428 -1.2306 29 1 5.1121 -1.4961 0.1098 30 1 3.6375 -2.4924 0.0849 31 1 5.1192 -1.4125 2.4093 32 1 3.5871 -2.2818 2.6648 33 1 4.3916 -1.6183 5.0726 34 1 4.7248 -1.7351 8.3916 35 1 1.6649 -1.7461 1.2549 36 1 1.6906 -0.2014 2.1388 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612161644.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:27 Heat of formation + Delta-G solvation = -37.458600 kcal Electronic energy + Delta-G solvation = -18677.352873 eV Core-core repulsion = 15774.166715 eV Total energy + Delta-G solvation = -2903.186158 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.99317 -39.65250 -37.14039 -35.95899 -34.98656 -33.24692 -32.91234 -29.08196 -27.61576 -26.50659 -24.19555 -23.80989 -21.74141 -20.97256 -19.86245 -17.80689 -17.63295 -16.77523 -16.48446 -16.10402 -15.69952 -15.59227 -15.27513 -15.05417 -14.61511 -14.41140 -13.94078 -13.70208 -13.48831 -13.32487 -13.22262 -12.99210 -12.88575 -12.70964 -12.50623 -12.41254 -12.24131 -12.14389 -11.74435 -11.52023 -11.29707 -11.25664 -10.24746 -9.98292 -9.10588 -8.46784 -5.94621 1.34702 1.39767 1.53548 1.96914 1.98987 2.08312 2.28017 2.76834 3.07767 3.20566 3.41022 3.76787 3.90685 4.05012 4.18062 4.35957 4.39766 4.48254 4.57981 4.64627 4.69132 4.79428 4.88967 4.91488 5.00516 5.06699 5.11433 5.28153 5.34909 5.40763 5.43209 5.91389 6.11283 6.31894 6.62675 6.80143 7.14881 7.59089 8.16435 8.70881 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.032762 B = 0.005322 C = 0.004956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.448371 B = 5260.033925 C = 5648.253170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.039 3.961 3 C 0.252 3.748 4 N -0.509 5.509 5 C -0.101 4.101 6 C -0.120 4.120 7 C 0.052 3.948 8 N -0.550 5.550 9 C 0.062 3.938 10 C 0.438 3.562 11 O -0.616 6.616 12 N -0.575 5.575 13 C -0.330 4.330 14 H 0.073 0.927 15 C -0.011 4.011 16 N -0.919 5.919 17 Si 0.989 3.011 18 H -0.279 1.279 19 H -0.267 1.267 20 H -0.271 1.271 21 C 0.066 3.934 22 H 0.046 0.954 23 H 0.081 0.919 24 H 0.109 0.891 25 H 0.118 0.882 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.035 0.965 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.396 0.604 34 H 0.277 0.723 35 H 0.080 0.920 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.358 -8.738 -16.359 19.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.035 3.965 3 C -0.064 4.064 4 N -0.184 5.184 5 C -0.139 4.139 6 C -0.158 4.158 7 C -0.074 4.074 8 N -0.276 5.276 9 C -0.069 4.069 10 C 0.226 3.774 11 O -0.502 6.502 12 N -0.213 5.213 13 C -0.460 4.460 14 H 0.091 0.909 15 C -0.211 4.211 16 N -0.561 5.561 17 Si 0.813 3.187 18 H -0.204 1.204 19 H -0.193 1.193 20 H -0.197 1.197 21 C -0.063 4.063 22 H 0.066 0.934 23 H 0.100 0.900 24 H 0.128 0.872 25 H 0.136 0.864 26 H 0.105 0.895 27 H 0.124 0.876 28 H 0.053 0.947 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.124 0.876 32 H 0.096 0.904 33 H 0.230 0.770 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.893 -6.001 -16.366 18.105 hybrid contribution 0.036 -0.540 1.479 1.575 sum -4.857 -6.541 -14.887 16.970 Atomic orbital electron populations 1.21889 0.89213 1.05499 1.03006 1.18752 0.97642 0.81695 0.98387 1.29527 0.91235 0.94834 0.90854 1.81084 1.11022 1.15481 1.10854 1.21784 0.95378 1.02382 0.94378 1.21672 0.96150 1.00354 0.97580 1.22267 1.00420 0.95919 0.88820 1.61355 1.08629 1.55830 1.01765 1.21687 1.02110 0.95185 0.87926 1.20955 0.83210 0.88841 0.84407 1.90519 1.48834 1.26036 1.84822 1.41936 1.55418 1.19150 1.04826 1.19610 1.39329 1.00797 0.86217 0.90944 1.25950 0.96477 0.98275 1.00351 1.69670 1.42819 1.20864 1.22706 0.84936 0.78310 0.77845 0.77624 1.20358 1.19253 1.19657 1.22203 0.87357 0.99935 0.96805 0.93447 0.90037 0.87249 0.86358 0.89490 0.87585 0.94657 0.90541 0.91654 0.87555 0.90421 0.76970 0.91324 0.90252 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 8.44 71.98 0.61 -1.70 16 2 C 0.04 0.90 0.72 -53.93 -0.04 0.86 16 3 C 0.25 8.62 12.35 89.44 1.10 9.72 16 4 N -0.51 -21.21 18.54 20.01 0.37 -20.84 16 5 C -0.10 -1.47 4.77 30.67 0.15 -1.32 16 6 C -0.12 -2.12 5.83 30.65 0.18 -1.94 16 7 C 0.05 1.07 5.46 86.33 0.47 1.54 16 8 N -0.55 -16.88 3.94 -900.95 -3.55 -20.43 16 9 C 0.06 2.07 5.45 85.56 0.47 2.53 16 10 C 0.44 21.01 7.31 87.65 0.64 21.65 16 11 O -0.62 -35.09 14.29 -3.07 -0.04 -35.13 16 12 N -0.58 -29.70 5.29 -306.99 -1.62 -31.33 16 13 C -0.33 -19.08 9.68 84.04 0.81 -18.27 16 14 H 0.07 4.55 7.16 -2.91 -0.02 4.53 16 15 C -0.01 -0.59 5.50 84.92 0.47 -0.12 16 16 N -0.92 -49.81 13.05 21.66 0.28 -49.52 16 17 Si 0.99 43.90 29.55 68.60 2.03 45.93 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 21 C 0.07 1.86 3.81 86.32 0.33 2.18 16 22 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 24 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.03 0.87 7.36 -2.39 -0.02 0.86 16 29 H 0.08 1.54 8.01 -2.39 -0.02 1.52 16 30 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.11 3.20 7.98 -2.38 -0.02 3.18 16 32 H 0.08 2.15 8.12 -2.39 -0.02 2.13 16 33 H 0.40 19.25 7.90 -92.71 -0.73 18.52 16 34 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 35 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.05 2.13 6.06 -2.39 -0.01 2.11 16 Total: -1.00 -77.60 301.31 3.00 -74.60 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.35 Total: 21.58 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 5.19 Total: 15.15 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -4.52 Total: -122.12 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -0.04 Total: -35.13 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -77.60 3.00 -74.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612161644.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.137 kcal (2) G-P(sol) polarization free energy of solvation -77.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds