Wall clock time and date at job start Sun Mar 29 2020 23:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30497 * 125.64818 * 2 1 4 4 C 1.34129 * 109.25760 * 180.28927 * 3 2 1 5 5 C 1.34679 * 108.01706 * 359.72463 * 4 3 2 6 6 N 1.35040 * 125.65023 * 179.81954 * 2 1 3 7 7 C 1.46500 * 126.39914 * 359.97438 * 6 2 1 8 8 C 1.53002 * 109.47156 * 84.71032 * 7 6 2 9 9 C 1.52998 * 109.47109 * 180.02562 * 8 7 6 10 10 C 1.50705 * 109.46921 * 180.02562 * 9 8 7 11 11 O 1.21293 * 119.99948 * 359.97438 * 10 9 8 12 12 N 1.34772 * 119.99909 * 180.02562 * 10 9 8 13 13 C 1.46508 * 119.99995 * 359.97438 * 12 10 9 14 14 C 1.37099 * 120.00262 * 179.97438 * 12 10 9 15 15 H 1.08000 * 119.99651 * 24.39636 * 14 12 10 16 16 C 1.38947 * 120.00103 * 204.39318 * 14 12 10 17 17 N 1.31408 * 120.00293 * 12.65923 * 16 14 12 18 18 Si 1.86801 * 119.99858 * 192.65315 * 16 14 12 19 19 H 1.48503 * 109.47369 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46973 * 120.00270 * 18 16 14 21 21 H 1.48498 * 109.47384 * 240.00167 * 18 16 14 22 22 H 1.09004 * 109.47206 * 270.17822 * 1 2 3 23 23 H 1.08993 * 109.47335 * 30.17472 * 1 2 3 24 24 H 1.09004 * 109.46897 * 150.17753 * 1 2 3 25 25 H 1.07996 * 125.99758 * 179.72228 * 4 3 2 26 26 H 1.08004 * 126.59072 * 179.97438 * 5 4 3 27 27 H 1.09003 * 109.47139 * 324.71527 * 7 6 2 28 28 H 1.08997 * 109.47381 * 204.71115 * 7 6 2 29 29 H 1.09003 * 109.46692 * 60.00222 * 8 7 6 30 30 H 1.08997 * 109.47043 * 300.00290 * 8 7 6 31 31 H 1.09006 * 109.47284 * 300.00145 * 9 8 7 32 32 H 1.08993 * 109.47240 * 60.00407 * 9 8 7 33 33 H 1.08999 * 109.47063 * 85.86622 * 13 12 10 34 34 H 1.08998 * 109.46865 * 205.86091 * 13 12 10 35 35 H 1.08996 * 109.46967 * 325.86542 * 13 12 10 36 36 H 0.97000 * 119.99971 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6820 -0.0064 5 6 3.5926 -0.6643 -0.0044 6 7 2.2941 -1.0973 0.0035 7 6 1.8426 -2.4910 0.0084 8 6 1.5583 -2.9401 -1.4264 9 6 1.0862 -4.3954 -1.4212 10 6 0.8069 -4.8379 -2.8344 11 8 0.9690 -4.0651 -3.7551 12 7 0.3759 -6.0920 -3.0752 13 6 0.1795 -7.0252 -1.9630 14 6 0.1213 -6.4944 -4.3608 15 1 0.6100 -6.0010 -5.1878 16 6 -0.7655 -7.5371 -4.5996 17 7 -1.5440 -7.9718 -3.6343 18 14 -0.8512 -8.3210 -6.2930 19 1 0.1213 -7.6551 -7.1965 20 1 -0.5198 -9.7647 -6.1875 21 1 -2.2226 -8.1667 -6.8412 22 1 -0.3634 0.0032 1.0277 23 1 -0.3633 0.8883 -0.5165 24 1 -0.3633 -0.8916 -0.5111 25 1 4.4098 1.3411 -0.0122 26 1 4.4777 -1.2832 -0.0085 27 1 0.9327 -2.5761 0.6026 28 1 2.6188 -3.1229 0.4398 29 1 2.4682 -2.8550 -2.0206 30 1 0.7821 -2.3082 -1.8578 31 1 1.8622 -5.0276 -0.9895 32 1 0.1763 -4.4800 -0.8271 33 1 -0.8182 -6.8887 -1.5460 34 1 0.2855 -8.0482 -2.3241 35 1 0.9252 -6.8331 -1.1915 36 1 -2.1628 -8.6999 -3.8010 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727647177.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:25:51 Heat of formation + Delta-G solvation = 21.646855 kcal Electronic energy + Delta-G solvation = -18047.974049 eV Core-core repulsion = 15147.350896 eV Total energy + Delta-G solvation = -2900.623153 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -42.02955 -38.60299 -35.50417 -34.59468 -32.03342 -31.69973 -31.39155 -27.42184 -26.71027 -26.03041 -24.33651 -22.12533 -21.30294 -19.67032 -18.80041 -17.07456 -16.84858 -16.01828 -15.53808 -15.27388 -14.64781 -14.37273 -14.12060 -13.79729 -13.47345 -13.00770 -12.97195 -12.49921 -12.31459 -12.26227 -12.09038 -11.60284 -11.40291 -11.29138 -11.24571 -10.90052 -10.64806 -10.35314 -10.28246 -9.91428 -9.53297 -9.06313 -8.46150 -8.29318 -7.71093 -6.37319 -3.93561 2.09013 2.81798 3.11774 3.19658 3.22655 3.29582 3.84001 4.09831 4.52100 4.61241 4.66796 4.85190 5.06520 5.15865 5.16404 5.30239 5.40746 5.49216 5.51770 5.57662 5.75413 5.81998 5.88143 5.98246 6.20177 6.32368 6.41249 6.46345 6.78223 6.81509 7.12669 7.23994 7.52541 8.10048 8.15968 8.43925 9.14541 9.37803 9.93491 10.67825 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.046047 B = 0.003979 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.932396 B = 7036.008291 C = 7103.254662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.206 3.794 3 N -0.499 5.499 4 C -0.034 4.034 5 C -0.058 4.058 6 N -0.450 5.450 7 C 0.101 3.899 8 C -0.113 4.113 9 C -0.127 4.127 10 C 0.445 3.555 11 O -0.590 6.590 12 N -0.447 5.447 13 C 0.112 3.888 14 C -0.307 4.307 15 H 0.098 0.902 16 C 0.031 3.969 17 N -0.883 5.883 18 Si 0.925 3.075 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.281 1.281 22 H 0.077 0.923 23 H 0.089 0.911 24 H 0.077 0.923 25 H 0.167 0.833 26 H 0.172 0.828 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.025 0.975 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.108 6.263 10.615 13.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.056 4.056 3 N -0.218 5.218 4 C -0.182 4.182 5 C -0.191 4.191 6 N -0.132 5.132 7 C -0.022 4.022 8 C -0.152 4.152 9 C -0.168 4.168 10 C 0.233 3.767 11 O -0.475 6.475 12 N -0.166 5.166 13 C -0.032 4.032 14 C -0.435 4.435 15 H 0.115 0.885 16 C -0.172 4.172 17 N -0.522 5.522 18 Si 0.752 3.248 19 H -0.192 1.192 20 H -0.206 1.206 21 H -0.207 1.207 22 H 0.096 0.904 23 H 0.107 0.893 24 H 0.096 0.904 25 H 0.184 0.816 26 H 0.189 0.811 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.044 0.956 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.709 7.113 10.192 13.291 hybrid contribution 0.241 -1.560 -0.674 1.717 sum 4.950 5.552 9.518 12.080 Atomic orbital electron populations 1.20220 0.85107 1.04407 1.03247 1.23284 0.95736 0.81435 1.05154 1.70214 1.02283 1.28485 1.20824 1.22231 0.94771 0.92784 1.08456 1.22700 0.87226 0.96847 1.12325 1.45485 1.06442 1.07635 1.53680 1.22063 1.01689 0.78739 0.99661 1.21629 1.03460 0.96461 0.93636 1.21444 1.02031 0.95604 0.97680 1.20001 0.84596 0.82340 0.89782 1.90529 1.58057 1.52867 1.46071 1.43600 1.57072 1.08721 1.07227 1.21476 0.98490 0.95377 0.87875 1.19695 1.23768 1.16191 0.83861 0.88460 1.25341 0.94515 0.98108 0.99281 1.69991 1.21733 1.27691 1.32808 0.85880 0.78298 0.78682 0.81966 1.19217 1.20638 1.20691 0.90401 0.89269 0.90394 0.81595 0.81086 0.88977 0.88962 0.90701 0.90586 0.90350 0.90048 0.93003 0.90747 0.95620 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.04 36.01 0.36 -0.41 16 2 C 0.21 2.88 7.90 -155.42 -1.23 1.66 16 3 N -0.50 -7.76 11.25 -10.82 -0.12 -7.89 16 4 C -0.03 -0.46 11.87 -17.81 -0.21 -0.67 16 5 C -0.06 -0.71 11.58 -16.56 -0.19 -0.90 16 6 N -0.45 -5.81 2.75 -113.90 -0.31 -6.13 16 7 C 0.10 1.11 5.68 -4.04 -0.02 1.08 16 8 C -0.11 -1.67 4.83 -26.73 -0.13 -1.80 16 9 C -0.13 -2.04 4.31 -27.88 -0.12 -2.16 16 10 C 0.44 10.41 7.63 -10.99 -0.08 10.32 16 11 O -0.59 -16.09 15.70 5.55 0.09 -16.00 16 12 N -0.45 -11.18 3.01 -122.19 -0.37 -11.55 16 13 C 0.11 2.37 8.44 59.85 0.51 2.88 16 14 C -0.31 -8.49 9.24 -14.93 -0.14 -8.63 16 15 H 0.10 2.84 7.45 -52.49 -0.39 2.45 16 16 C 0.03 0.80 5.04 -17.47 -0.09 0.71 16 17 N -0.88 -23.19 10.83 55.50 0.60 -22.59 16 18 Si 0.92 20.55 29.57 -169.99 -5.03 15.52 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.08 0.81 7.33 -51.93 -0.38 0.43 16 25 H 0.17 1.76 8.06 -52.49 -0.42 1.34 16 26 H 0.17 1.59 8.06 -52.48 -0.42 1.16 16 27 H 0.09 0.85 7.94 -51.93 -0.41 0.44 16 28 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 30 H 0.08 1.26 7.59 -51.93 -0.39 0.87 16 31 H 0.08 1.09 7.41 -51.93 -0.38 0.71 16 32 H 0.08 1.18 8.11 -51.93 -0.42 0.76 16 33 H 0.05 1.13 7.83 -51.93 -0.41 0.72 16 34 H 0.07 1.69 6.80 -51.93 -0.35 1.34 16 35 H 0.03 0.43 6.61 -51.93 -0.34 0.09 16 36 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 LS Contribution 305.00 15.07 4.60 4.60 Total: -1.00 -33.38 305.00 -7.05 -40.42 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -5.16 Total: 1.53 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -1.35 Total: 2.08 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -0.20 Total: -48.15 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: 0.09 Total: -16.00 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.03 Total: 15.52 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.38 -7.05 -40.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727647177.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.070 kcal (2) G-P(sol) polarization free energy of solvation -33.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds