Wall clock time and date at job start Sun Mar 29 2020 22:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.47202 * 109.49602 * 2 1 4 4 N 2.60803 * 109.49472 * 359.97438 * 2 1 3 5 5 C 1.53037 * 109.49508 * 120.06238 * 2 1 3 6 6 C 1.53042 * 109.53531 * 181.35266 * 5 2 1 7 7 C 1.53190 * 109.31252 * 298.63334 * 6 5 2 8 8 N 1.46926 * 108.77768 * 54.63618 * 7 6 5 9 9 C 1.34776 * 120.63673 * 126.36672 * 8 7 6 10 10 O 1.21579 * 120.00671 * 185.23057 * 9 8 7 11 11 N 1.34782 * 119.99361 * 5.22658 * 9 8 7 12 12 C 1.46496 * 119.99575 * 175.01803 * 11 9 8 13 13 C 1.50704 * 109.46961 * 180.02562 * 12 11 9 14 14 H 1.07997 * 119.99766 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00052 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00175 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00127 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47452 * 179.97438 * 17 15 13 19 19 H 1.48499 * 109.47034 * 299.99275 * 17 15 13 20 20 H 1.48499 * 109.47681 * 59.99427 * 17 15 13 21 21 C 1.46934 * 118.73516 * 306.64583 * 8 7 6 22 22 H 1.08997 * 109.47434 * 299.93656 * 1 2 3 23 23 H 1.09002 * 109.47050 * 59.93707 * 1 2 3 24 24 H 1.09000 * 109.47295 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46240 * 61.33429 * 5 2 1 26 26 H 1.09005 * 109.45165 * 301.35944 * 5 2 1 27 27 H 1.09002 * 109.49710 * 178.68580 * 6 5 2 28 28 H 1.09000 * 109.50140 * 58.58618 * 6 5 2 29 29 H 1.09002 * 109.58960 * 294.84974 * 7 6 5 30 30 H 1.08998 * 109.70454 * 174.49408 * 7 6 5 31 31 H 0.96998 * 119.99933 * 355.02183 * 11 9 8 32 32 H 1.08994 * 109.47439 * 60.00027 * 12 11 9 33 33 H 1.09004 * 109.47041 * 299.99774 * 12 11 9 34 34 H 0.97000 * 120.00621 * 180.02562 * 16 15 13 35 35 H 1.09000 * 109.58305 * 173.14118 * 21 8 7 36 36 H 1.08996 * 109.58909 * 293.56502 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0213 1.3876 0.0000 4 7 2.4004 2.4585 -0.0011 5 6 2.0407 -0.7227 1.2486 6 6 3.5708 -0.6938 1.2667 7 6 4.1059 -1.4254 0.0317 8 7 3.5054 -0.8283 -1.1689 9 6 4.2819 -0.3845 -2.1771 10 8 3.7802 0.1931 -3.1220 11 7 5.6147 -0.5809 -2.1377 12 6 6.4458 -0.1969 -3.2814 13 6 7.8877 -0.5199 -2.9855 14 1 8.1581 -0.9661 -2.0399 15 6 8.8619 -0.2448 -3.9215 16 7 8.5328 0.2990 -5.0729 17 14 10.6493 -0.6444 -3.5545 18 1 11.4918 -0.2554 -4.7139 19 1 11.0871 0.1060 -2.3501 20 1 10.7902 -2.1020 -3.3078 21 6 2.0422 -0.7186 -1.2469 22 1 -0.3634 0.5128 0.8905 23 1 -0.3633 0.5148 -0.8894 24 1 -0.3634 -1.0277 -0.0005 25 1 1.6972 -1.7570 1.2355 26 1 1.6577 -0.2239 2.1389 27 1 3.9333 -1.1883 2.1679 28 1 3.9154 0.3402 1.2547 29 1 3.8387 -2.4807 0.0877 30 1 5.1903 -1.3250 -0.0137 31 1 6.0236 -0.9765 -1.3521 32 1 6.3425 0.8728 -3.4628 33 1 6.1244 -0.7480 -4.1653 34 1 9.2181 0.4923 -5.7316 35 1 1.7653 -0.1497 -2.1345 36 1 1.6032 -1.7150 -1.2973 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787359527.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:52 Heat of formation + Delta-G solvation = -8.277589 kcal Electronic energy + Delta-G solvation = -18605.118442 eV Core-core repulsion = 15703.197668 eV Total energy + Delta-G solvation = -2901.920774 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.35584 -38.19236 -35.75072 -34.30068 -33.70546 -32.16410 -31.96369 -27.71658 -26.73928 -25.18227 -23.21760 -22.45783 -21.77843 -19.34697 -18.09424 -16.93082 -15.99583 -15.68828 -15.27844 -14.96518 -14.68065 -14.29439 -13.83017 -13.69788 -13.42692 -13.21715 -13.10288 -12.57271 -12.28805 -12.21856 -12.00722 -11.80560 -11.76853 -11.61734 -11.21570 -10.95472 -10.90991 -10.84283 -10.66823 -10.26656 -9.39720 -9.34928 -8.71579 -8.47200 -7.73944 -6.13242 -4.20102 2.85980 2.88592 3.11138 3.27046 3.31954 3.33736 3.75740 3.89892 4.31960 4.40228 4.52625 4.64756 4.75497 4.82445 5.06110 5.22585 5.22942 5.33312 5.43361 5.46051 5.55887 5.60495 5.69516 5.71181 5.81763 5.93700 6.04789 6.68870 7.09126 7.51588 7.53345 7.59292 7.68092 7.85255 8.03362 8.76144 8.89812 9.31280 9.48437 10.97009 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.036814 B = 0.004943 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.404158 B = 5663.396840 C = 5895.276618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.020 3.980 3 C 0.216 3.784 4 N -0.429 5.429 5 C -0.104 4.104 6 C -0.142 4.142 7 C 0.111 3.889 8 N -0.641 5.641 9 C 0.698 3.302 10 O -0.596 6.596 11 N -0.728 5.728 12 C 0.266 3.734 13 C -0.542 4.542 14 H 0.061 0.939 15 C 0.064 3.936 16 N -0.885 5.885 17 Si 0.904 3.096 18 H -0.285 1.285 19 H -0.276 1.276 20 H -0.275 1.275 21 C 0.142 3.858 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.386 0.614 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.266 0.734 35 H 0.101 0.899 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.550 -7.117 14.381 21.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.015 3.985 3 C -0.102 4.102 4 N -0.103 5.103 5 C -0.143 4.143 6 C -0.180 4.180 7 C -0.012 4.012 8 N -0.380 5.380 9 C 0.399 3.601 10 O -0.474 6.474 11 N -0.381 5.381 12 C 0.145 3.855 13 C -0.581 4.581 14 H 0.079 0.921 15 C -0.140 4.140 16 N -0.523 5.523 17 Si 0.731 3.269 18 H -0.211 1.211 19 H -0.201 1.201 20 H -0.201 1.201 21 C 0.016 3.984 22 H 0.085 0.915 23 H 0.087 0.913 24 H 0.098 0.902 25 H 0.105 0.895 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.220 0.780 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.076 0.924 35 H 0.119 0.881 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.184 -4.985 13.419 20.152 hybrid contribution 1.166 -0.698 0.539 1.462 sum -13.018 -5.683 13.958 19.915 Atomic orbital electron populations 1.21818 0.90821 1.03709 1.03395 1.18751 0.96692 0.84063 0.99007 1.28808 0.93433 0.94461 0.93504 1.81204 1.08254 1.12870 1.07972 1.21621 0.95959 1.01099 0.95603 1.22011 0.95514 1.01975 0.98532 1.21598 0.98577 0.96901 0.84160 1.47296 1.05620 1.66306 1.18826 1.16045 0.82321 0.79521 0.82229 1.90865 1.73616 1.47665 1.35280 1.45877 1.04478 1.65811 1.21979 1.18991 0.87710 0.96112 0.82674 1.21166 0.91304 1.43013 1.02581 0.92082 1.24937 0.99477 0.94768 0.94770 1.69969 1.34099 1.41603 1.06583 0.86472 0.83748 0.78782 0.77869 1.21060 1.20110 1.20066 1.21333 0.79984 1.00395 0.96641 0.91451 0.91283 0.90189 0.89462 0.90832 0.89981 0.91579 0.91109 0.89881 0.77952 0.95747 0.95740 0.92401 0.88115 0.89936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 8.44 37.16 0.31 -0.56 16 2 C 0.02 0.19 0.72 -157.40 -0.11 0.08 16 3 C 0.22 3.11 12.21 -20.76 -0.25 2.85 16 4 N -0.43 -7.66 18.54 42.15 0.78 -6.88 16 5 C -0.10 -0.75 4.69 -26.69 -0.13 -0.88 16 6 C -0.14 -1.30 5.84 -26.61 -0.16 -1.45 16 7 C 0.11 1.23 6.39 -3.71 -0.02 1.21 16 8 N -0.64 -9.66 2.68 -178.76 -0.48 -10.14 16 9 C 0.70 14.86 8.30 -86.91 -0.72 14.13 16 10 O -0.60 -15.25 15.77 5.30 0.08 -15.17 16 11 N -0.73 -16.15 5.46 -66.42 -0.36 -16.51 16 12 C 0.27 7.32 5.43 -5.19 -0.03 7.29 16 13 C -0.54 -15.01 9.28 -34.44 -0.32 -15.33 16 14 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 15 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 16 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 17 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 C 0.14 1.68 5.06 -3.93 -0.02 1.66 16 22 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.80 7.14 -51.93 -0.37 0.43 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.99 5.64 -51.93 -0.29 0.70 16 31 H 0.39 7.35 5.81 -40.82 -0.24 7.11 16 32 H 0.02 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.10 1.46 6.99 -51.93 -0.36 1.10 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 301.29 15.07 4.54 4.54 Total: -1.00 -36.00 301.29 -6.29 -42.29 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -5.03 Total: 0.88 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: -1.54 Total: 10.72 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: 0.68 Total: -59.35 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.08 Total: -15.17 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -36.00 -6.29 -42.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787359527.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.013 kcal (2) G-P(sol) polarization free energy of solvation -36.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds