Wall clock time and date at job start Sun Mar 29 2020 23:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.35311 * 126.12914 * 85.00127 * 3 2 1 5 5 C 1.39868 * 107.92268 * 179.97438 * 4 3 2 6 6 C 1.50703 * 125.89832 * 179.97438 * 5 4 3 7 7 N 1.46503 * 109.46503 * 95.00900 * 6 5 4 8 8 C 1.34780 * 119.99694 * 180.02562 * 7 6 5 9 9 O 1.21285 * 119.99811 * 359.97438 * 8 7 6 10 10 C 1.50697 * 119.99854 * 179.97438 * 8 7 6 11 11 C 1.53002 * 109.46781 * 179.97438 * 10 8 7 12 12 C 1.50705 * 109.46933 * 180.02562 * 11 10 8 13 13 H 1.08002 * 120.00253 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00180 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99662 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00154 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47316 * 89.99986 * 16 14 12 18 18 H 1.48499 * 109.46940 * 209.99970 * 16 14 12 19 19 H 1.48505 * 109.46792 * 330.00002 * 16 14 12 20 20 N 1.30838 * 108.20045 * 0.02562 * 5 4 3 21 21 N 1.34949 * 126.12555 * 264.68786 * 3 2 1 22 22 H 0.97005 * 126.03781 * 0.04587 * 21 3 2 23 23 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 24 24 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 28 28 H 1.08000 * 126.03504 * 359.94205 * 4 3 2 29 29 H 1.09001 * 109.47004 * 215.00123 * 6 5 4 30 30 H 1.08993 * 109.47159 * 335.00714 * 6 5 4 31 31 H 0.96998 * 120.00288 * 359.97438 * 7 6 5 32 32 H 1.09005 * 109.47125 * 299.99991 * 10 8 7 33 33 H 1.09000 * 109.47331 * 59.99757 * 10 8 7 34 34 H 1.08993 * 109.47313 * 299.99613 * 11 10 8 35 35 H 1.08998 * 109.47007 * 60.00578 * 11 10 8 36 36 H 0.97004 * 119.99645 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2084 2.2048 1.0887 5 6 2.6877 3.4446 0.6534 6 6 3.0217 4.6214 1.5336 7 7 4.4538 4.6093 1.8423 8 6 4.9835 5.5736 2.6208 9 8 4.2747 6.4515 3.0655 10 6 6.4565 5.5608 2.9388 11 6 6.7956 6.7556 3.8323 12 6 8.2688 6.7432 4.1498 13 1 8.9000 5.9612 3.7543 14 6 8.8107 7.7297 4.9462 15 7 8.0419 8.6812 5.4291 16 14 10.6366 7.7140 5.3403 17 1 11.3724 8.4884 4.3088 18 1 10.8605 8.3281 6.6737 19 1 11.1284 6.3128 5.3518 20 7 2.7950 3.4065 -0.6500 21 7 2.3926 2.1373 -1.0853 22 1 2.3736 1.8289 -2.0049 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 2.0129 1.9231 2.1128 29 1 2.7697 5.5463 1.0148 30 1 2.4499 4.5566 2.4593 31 1 5.0206 3.9069 1.4870 32 1 6.7083 4.6357 3.4575 33 1 7.0286 5.6257 2.0133 34 1 6.5440 7.6804 3.3133 35 1 6.2236 6.6910 4.7579 36 1 8.4233 9.3755 5.9891 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812507500.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:49:48 Heat of formation + Delta-G solvation = 11.541457 kcal Electronic energy + Delta-G solvation = -17229.960478 eV Core-core repulsion = 14328.899122 eV Total energy + Delta-G solvation = -2901.061356 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.56976 -38.98314 -35.14712 -34.06840 -33.38368 -31.68198 -30.78811 -29.33447 -27.21169 -25.10593 -24.21056 -21.59091 -20.69028 -20.26259 -19.43420 -17.69505 -16.80682 -15.77835 -15.60459 -15.16429 -14.90981 -14.72825 -14.36115 -14.28965 -13.69394 -13.21119 -13.11462 -12.73671 -12.66674 -12.12911 -12.06141 -11.78340 -11.58020 -11.10379 -10.89307 -10.80022 -10.56116 -9.89182 -9.82079 -9.60240 -9.10537 -8.95071 -8.85493 -8.71941 -8.27100 -5.91439 -3.95486 1.55069 2.37441 2.55400 3.33398 3.36772 3.42496 3.45276 3.83555 4.17170 4.39448 4.50483 4.51939 4.76893 4.93665 5.15998 5.26958 5.39274 5.43418 5.44821 5.57840 5.63051 5.69540 5.89835 5.95310 6.30517 6.32309 6.34860 6.74880 6.96380 6.98887 7.42360 7.79870 7.92958 7.95905 8.12949 8.44191 8.84630 9.13338 9.67678 11.19568 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.050975 B = 0.003112 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.152791 B = 8995.104035 C = 9174.005094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.062 4.062 3 C 0.086 3.914 4 C -0.254 4.254 5 C 0.067 3.933 6 C 0.200 3.800 7 N -0.738 5.738 8 C 0.512 3.488 9 O -0.535 6.535 10 C -0.129 4.129 11 C 0.036 3.964 12 C -0.526 4.526 13 H 0.056 0.944 14 C 0.057 3.943 15 N -0.890 5.890 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 N -0.276 5.276 21 N -0.473 5.473 22 H 0.437 0.563 23 H 0.063 0.937 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.150 0.850 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.399 0.601 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.024 0.976 35 H 0.024 0.976 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.970 -19.644 -12.590 27.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.101 4.101 3 C -0.042 4.042 4 C -0.283 4.283 5 C -0.100 4.100 6 C 0.075 3.925 7 N -0.393 5.393 8 C 0.300 3.700 9 O -0.410 6.410 10 C -0.169 4.169 11 C -0.001 4.001 12 C -0.564 4.564 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.529 5.529 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 N -0.099 5.099 21 N -0.182 5.182 22 H 0.281 0.719 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.111 0.889 27 H 0.093 0.907 28 H 0.167 0.833 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.232 0.768 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.042 0.958 35 H 0.043 0.957 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.171 -18.156 -13.157 26.525 hybrid contribution 0.981 -0.967 0.181 1.389 sum -13.190 -19.123 -12.976 26.609 Atomic orbital electron populations 1.21760 0.93810 1.02317 1.02734 1.20238 0.96640 0.89187 1.04067 1.21125 0.99744 0.95555 0.87821 1.21198 1.13645 0.93962 0.99543 1.22334 0.99707 0.96365 0.91590 1.19448 0.83471 0.93283 0.96313 1.46168 1.08345 1.30761 1.54001 1.21562 0.91869 0.80018 0.76532 1.90673 1.62782 1.36078 1.51439 1.21861 0.88695 1.03927 1.02402 1.18907 0.95786 0.91159 0.94258 1.21236 0.93758 1.10570 1.30871 0.92625 1.25029 0.97846 0.95578 0.95986 1.70004 1.35108 1.13661 1.34098 0.86592 0.85595 0.78107 0.77653 1.20706 1.21246 1.19913 1.77393 1.21624 0.98213 1.12719 1.46345 1.52905 1.10206 1.08713 0.71948 0.91753 0.92689 0.91686 0.88903 0.90665 0.83255 0.90304 0.89660 0.76791 0.90211 0.90248 0.95779 0.95741 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.89 37.16 0.37 -0.30 16 2 C -0.06 -0.30 6.48 -27.88 -0.18 -0.48 16 3 C 0.09 0.72 6.46 -82.26 -0.53 0.18 16 4 C -0.25 -2.60 10.65 -40.01 -0.43 -3.02 16 5 C 0.07 0.83 6.59 -82.40 -0.54 0.28 16 6 C 0.20 2.79 6.23 -5.19 -0.03 2.76 16 7 N -0.74 -11.27 5.55 -61.47 -0.34 -11.61 16 8 C 0.51 10.21 7.83 -10.99 -0.09 10.12 16 9 O -0.53 -12.89 15.98 5.55 0.09 -12.80 16 10 C -0.13 -2.70 5.64 -27.88 -0.16 -2.85 16 11 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 12 C -0.53 -15.18 9.11 -34.44 -0.31 -15.50 16 13 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -27.81 13.29 55.43 0.74 -27.08 16 16 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 N -0.28 -3.49 12.70 33.67 0.43 -3.07 16 21 N -0.47 -4.27 7.36 33.48 0.25 -4.03 16 22 H 0.44 2.57 8.96 -182.61 -1.64 0.93 16 23 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 24 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.15 1.32 8.06 -52.49 -0.42 0.89 16 29 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.40 5.21 8.46 -40.82 -0.35 4.87 16 32 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 33 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 35 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 36 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 315.35 15.07 4.75 4.75 Total: -1.00 -35.78 315.35 -7.82 -43.60 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -6.59 Total: -0.39 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -2.12 Total: -6.33 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: 1.07 Total: -45.78 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.09 Total: -12.80 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -35.78 -7.82 -43.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812507500.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.144 kcal (2) G-P(sol) polarization free energy of solvation -35.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds