Wall clock time and date at job start Mon Mar 30 2020 00:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50705 * 119.99521 * 2 1 4 4 C 1.53003 * 109.46824 * 124.99739 * 3 2 1 5 5 C 1.50697 * 109.46809 * 179.97438 * 4 3 2 6 6 N 1.29944 * 126.29027 * 270.02499 * 5 4 3 7 7 O 1.21304 * 110.25356 * 179.68390 * 6 5 4 8 8 C 1.33636 * 109.80717 * 0.47322 * 7 6 5 9 9 C 1.50709 * 126.55195 * 179.79940 * 8 7 6 10 10 H 1.08993 * 109.47237 * 164.68234 * 9 8 7 11 11 N 1.46901 * 109.46881 * 44.68595 * 9 8 7 12 12 C 1.52999 * 109.46788 * 284.68891 * 9 8 7 13 13 C 1.53006 * 109.46626 * 184.99743 * 12 9 8 14 14 C 1.50699 * 109.46866 * 179.97438 * 13 12 9 15 15 H 1.08003 * 119.99963 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00270 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99835 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00496 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.47141 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47162 * 120.00342 * 18 16 14 21 21 H 1.48501 * 109.47494 * 240.00320 * 18 16 14 22 22 N 1.31133 * 106.90054 * 359.53420 * 8 7 6 23 23 H 1.08001 * 119.99546 * 179.97438 * 1 2 3 24 24 H 1.07997 * 120.00410 * 0.02562 * 1 2 3 25 25 H 1.07991 * 120.00139 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.47167 * 5.00023 * 3 2 1 27 27 H 1.09000 * 109.47171 * 245.00021 * 3 2 1 28 28 H 1.08998 * 109.47017 * 60.00192 * 4 3 2 29 29 H 1.08998 * 109.46982 * 299.99938 * 4 3 2 30 30 H 1.00892 * 111.00219 * 176.05383 * 11 9 8 31 31 H 1.00908 * 110.99656 * 300.00417 * 11 9 8 32 32 H 1.08993 * 109.47839 * 64.99813 * 12 9 8 33 33 H 1.09000 * 109.47160 * 304.99374 * 12 9 8 34 34 H 1.09000 * 109.47050 * 299.99699 * 13 12 9 35 35 H 1.09001 * 109.46801 * 59.99811 * 13 12 9 36 36 H 0.96992 * 120.00038 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0349 1.3332 1.1817 5 6 3.7888 2.6381 1.1813 6 7 4.9162 2.8748 0.5802 7 8 5.2586 4.0234 0.7670 8 6 4.3599 4.6444 1.5367 9 6 4.4148 6.0761 2.0042 10 1 3.4353 6.3742 2.3780 11 7 4.7951 6.9436 0.8813 12 6 5.4496 6.2077 3.1235 13 6 5.4175 7.6314 3.6829 14 6 6.4362 7.7609 4.7858 15 1 7.0454 6.9124 5.0605 16 6 6.5907 8.9624 5.4441 17 7 5.8485 9.9955 5.1099 18 14 7.8530 9.1228 6.8116 19 1 8.5531 7.8258 6.9936 20 1 8.8407 10.1720 6.4530 21 1 7.1690 9.4980 8.0752 22 7 3.4180 3.7717 1.8028 23 1 -0.5399 -0.9354 -0.0004 24 1 -0.5401 0.9352 -0.0004 25 1 1.8500 -0.9352 -0.0004 26 1 1.3585 2.1317 0.0896 27 1 2.6212 1.4028 -0.9314 28 1 3.7399 0.5068 1.0921 29 1 2.4771 1.2357 2.1130 30 1 4.7766 7.9152 1.1525 31 1 5.7005 6.6871 0.5168 32 1 6.4426 5.9954 2.7273 33 1 5.2167 5.4995 3.9187 34 1 5.6504 8.3396 2.8877 35 1 4.4245 7.8437 4.0792 36 1 5.9574 10.8409 5.5727 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823262945.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:00:45 Heat of formation + Delta-G solvation = 61.622605 kcal Electronic energy + Delta-G solvation = -17561.359511 eV Core-core repulsion = 14662.469837 eV Total energy + Delta-G solvation = -2898.889674 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.39271 -36.84179 -36.80150 -35.05812 -33.19650 -32.15380 -30.26908 -30.00968 -26.64766 -25.06856 -24.27715 -22.85553 -21.12776 -20.13804 -19.93988 -17.81479 -17.33245 -16.62537 -15.96335 -15.61043 -14.95572 -14.54070 -14.23680 -14.20776 -13.50985 -13.47499 -12.95364 -12.72454 -12.54108 -12.20901 -11.82769 -11.46906 -11.34009 -11.24156 -11.10522 -10.97839 -10.82935 -10.63426 -10.07463 -9.94266 -9.64443 -9.55409 -9.28376 -8.54160 -8.45894 -6.12074 -4.15170 1.32513 1.96362 2.38352 3.02183 3.24985 3.33197 3.37053 3.64856 4.07558 4.37382 4.66189 4.69596 4.90536 5.00206 5.04672 5.18426 5.24561 5.30078 5.45941 5.58588 5.61183 5.74565 5.80124 5.91010 6.10406 6.27912 6.33269 6.41224 6.47123 6.76727 7.19924 7.43550 7.55731 7.62072 7.84931 8.26195 8.33300 8.90570 9.50133 10.98954 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.041762 B = 0.003484 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.305464 B = 8034.318851 C = 8136.652832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.153 4.153 3 C -0.089 4.089 4 C -0.021 4.021 5 C 0.166 3.834 6 N -0.392 5.392 7 O 0.076 5.924 8 C 0.216 3.784 9 C 0.180 3.820 10 H 0.123 0.877 11 N -0.840 5.840 12 C -0.143 4.143 13 C 0.025 3.975 14 C -0.524 4.524 15 H 0.056 0.944 16 C 0.059 3.941 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 N -0.487 5.487 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.111 0.889 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.366 0.634 31 H 0.344 0.656 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.020 0.980 35 H 0.022 0.978 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.626 -14.627 -9.425 18.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.171 4.171 3 C -0.127 4.127 4 C -0.060 4.060 5 C -0.107 4.107 6 N -0.102 5.102 7 O 0.020 5.980 8 C -0.005 4.005 9 C 0.066 3.934 10 H 0.140 0.860 11 N -0.373 5.373 12 C -0.183 4.183 13 C -0.012 4.012 14 C -0.562 4.562 15 H 0.074 0.926 16 C -0.143 4.143 17 N -0.531 5.531 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.209 1.209 22 N -0.221 5.221 23 H 0.116 0.884 24 H 0.116 0.884 25 H 0.129 0.871 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.109 0.891 29 H 0.115 0.885 30 H 0.183 0.817 31 H 0.157 0.843 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.038 0.962 35 H 0.040 0.960 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.260 -15.470 -10.038 19.819 hybrid contribution 1.543 0.577 1.468 2.206 sum -5.718 -14.893 -8.570 18.109 Atomic orbital electron populations 1.23907 0.95933 1.02026 1.00758 1.22870 0.96036 0.98016 1.00213 1.20713 0.97946 0.96236 0.97812 1.19860 0.96723 0.88614 1.00786 1.25766 0.91932 0.97536 0.95454 1.74581 1.16255 0.96621 1.22711 1.85252 1.43790 1.16909 1.52093 1.29099 0.83614 0.98865 0.88934 1.20232 1.03035 0.79479 0.90644 0.85960 1.58980 1.36436 1.08687 1.33244 1.22534 0.96537 1.02992 0.96217 1.19112 0.97904 0.88256 0.95968 1.21182 1.20194 0.96792 1.18035 0.92581 1.25006 0.96126 0.95878 0.97284 1.69953 1.39577 1.01850 1.41760 0.86515 0.81334 0.78133 0.81921 1.19745 1.20921 1.20908 1.71878 1.26087 0.99989 1.24138 0.88377 0.88404 0.87124 0.90687 0.90642 0.89138 0.88550 0.81657 0.84349 0.92211 0.91989 0.96168 0.95970 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.44 14.32 29.01 0.42 -1.02 16 2 C -0.15 -1.23 9.52 -36.02 -0.34 -1.58 16 3 C -0.09 -0.86 5.64 -27.88 -0.16 -1.02 16 4 C -0.02 -0.23 5.82 -27.88 -0.16 -0.39 16 5 C 0.17 2.49 7.47 -156.38 -1.17 1.32 16 6 N -0.39 -6.35 12.16 30.90 0.38 -5.97 16 7 O 0.08 1.26 11.29 18.12 0.20 1.46 16 8 C 0.22 3.56 7.32 -13.06 -0.10 3.47 16 9 C 0.18 2.91 3.35 -68.86 -0.23 2.68 16 10 H 0.12 1.99 8.14 -51.93 -0.42 1.57 16 11 N -0.84 -12.35 9.17 -5.65 -0.05 -12.40 16 12 C -0.14 -2.69 4.78 -26.73 -0.13 -2.82 16 13 C 0.02 0.58 4.74 -27.88 -0.13 0.45 16 14 C -0.52 -14.08 9.11 -34.44 -0.31 -14.39 16 15 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16 18 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 N -0.49 -8.11 11.55 -9.87 -0.11 -8.22 16 23 H 0.10 0.61 8.06 -52.49 -0.42 0.18 16 24 H 0.10 0.74 7.84 -52.49 -0.41 0.33 16 25 H 0.11 0.75 8.06 -52.49 -0.42 0.33 16 26 H 0.07 0.79 7.79 -51.93 -0.40 0.38 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.37 5.42 7.55 -39.30 -0.30 5.12 16 31 H 0.34 4.72 8.97 -39.29 -0.35 4.36 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.02 0.47 6.87 -51.93 -0.36 0.12 16 35 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 314.02 15.07 4.73 4.73 Total: -1.00 -29.46 314.02 -6.72 -36.18 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -5.17 Total: 4.80 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -2.41 Total: -11.78 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: 0.95 Total: -51.41 kcal Atomic # 8 Polarization: 1.26 SS G_CDS: 0.20 Total: 1.46 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.46 -6.72 -36.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823262945.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.805 kcal (2) G-P(sol) polarization free energy of solvation -29.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds